View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7704_low_4 (Length: 720)

Name: NF7704_low_4
Description: NF7704
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7704_low_4
NF7704_low_4
[»] chr6 (19 HSPs)
chr6 (515-697)||(4849419-4849619)
chr6 (604-704)||(15873128-15873229)
chr6 (37-502)||(11771485-11771948)
chr6 (603-683)||(21058200-21058280)
chr6 (602-699)||(15682783-15682884)
chr6 (32-220)||(13374360-13374548)
chr6 (37-278)||(13332797-13333039)
chr6 (626-704)||(21058283-21058362)
chr6 (314-502)||(11774434-11774623)
chr6 (515-565)||(7438600-7438650)
chr6 (307-433)||(13374654-13374780)
chr6 (515-569)||(15873278-15873332)
chr6 (515-569)||(21058102-21058156)
chr6 (343-492)||(13314786-13314935)
chr6 (319-391)||(13374582-13374654)
chr6 (439-502)||(13332650-13332713)
chr6 (603-641)||(7438701-7438739)
chr6 (41-93)||(13342879-13342929)
chr6 (515-567)||(15682671-15682730)
[»] chr7 (2 HSPs)
chr7 (515-704)||(12976599-12976806)
chr7 (515-704)||(18293368-18293575)
[»] chr5 (3 HSPs)
chr5 (602-704)||(26447206-26447308)
chr5 (602-699)||(23543424-23543521)
chr5 (515-565)||(23543324-23543375)
[»] chr8 (7 HSPs)
chr8 (602-699)||(17885262-17885360)
chr8 (515-699)||(25091661-25091872)
chr8 (603-683)||(4931470-4931548)
chr8 (602-699)||(8361584-8361683)
chr8 (626-699)||(4931551-4931625)
chr8 (515-566)||(4931360-4931411)
chr8 (515-565)||(8361480-8361532)
[»] scaffold0229 (1 HSPs)
scaffold0229 (602-704)||(25182-25284)
[»] chr2 (4 HSPs)
chr2 (605-699)||(27203604-27203700)
chr2 (605-699)||(27858751-27858847)
chr2 (515-602)||(27203719-27203812)
chr2 (515-602)||(27858866-27858959)
[»] chr1 (2 HSPs)
chr1 (602-704)||(1365469-1365570)
chr1 (515-699)||(42026092-42026296)
[»] chr4 (5 HSPs)
chr4 (603-683)||(13915496-13915574)
chr4 (626-699)||(13915419-13915493)
chr4 (602-699)||(14249473-14249570)
chr4 (515-566)||(13915627-13915678)
chr4 (515-602)||(14249586-14249677)
[»] chr3 (6 HSPs)
chr3 (602-699)||(38357442-38357538)
chr3 (626-704)||(35684022-35684101)
chr3 (603-683)||(35684104-35684182)
chr3 (641-699)||(20776697-20776755)
chr3 (515-566)||(35684259-35684310)
chr3 (515-570)||(38357330-38357387)


Alignment Details
Target: chr6 (Bit Score: 109; Significance: 2e-54; HSPs: 19)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 515 - 697
Target Start/End: Complemental strand, 4849619 - 4849419
Alignment:
Q  515 atattatcaactatatgttctgcttcattttttatacaatctgctatatatccgtcnnnnnnnn--ctttgttctttggagcgcctatgt---------- 602  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||          ||||||||||||||||||||||||              
T  4849619 atattatcaactatatgttctgcttcattttttatacaatctgctatatatccgtcttttttttttctttgttctttggagcgcctatgtctatgtgcat 4849520  T
Q  603 ------gacaattttgtagtccctttttcaagccttttctgttgtgtttttgttgatggcttattttataatatgcttagttaaaaaatgcgatagatag 696  Q
          |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  4849519 gcacaggacaattttgtagtccctttttcaagccttttctgttgtgtttttgttgatggcttattttataatatgcttagttaaaaaatgtgatagatag 4849420  T
Q  697 t 697  Q
    |    
T  4849419 t 4849419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 604 - 704
Target Start/End: Complemental strand, 15873229 - 15873128
Alignment:
Q  604 acaattttgtagtccctttttcaagccttttctgttgtgtttttgttgatggcttattttataatatgcttagttaa-aaaatgcgatagatagttgatg 702  Q
    ||||||||||||||| ||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||| |||||||||||| ||    
T  15873229 acaattttgtagtccattttttaagccttttctgttgtgtttttgttgatggattattttataatatgcttagttaaaaaaatgtgatagatagttggtg 15873130  T
Q  703 tc 704  Q
    ||    
T  15873129 tc 15873128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 37 - 502
Target Start/End: Original strand, 11771485 - 11771948
Alignment:
Q  37 tatattcatatcactgacattcatgcgagatgggcatgaattgttgcaattctatgtagttgatatgaatgtatgatgtaacaaattttcaatttatatt 136  Q
    ||||| ||||||| ||||||||||||||  ||  ||||||||| |||||||||||||  || ||||||||||| |||||||  | |||||||||| ||||    
T  11771485 tatatgcatatcagtgacattcatgcgacgtg--catgaattggtgcaattctatgtcattaatatgaatgtacgatgtaa-tatttttcaatttgtatt 11771581  T
Q  137 ataaaaattgacaaacaaaaggaataggaagaagattaacaaatttttcgacttgtatattcatatcaaggacatatgattgcaccaatatatacaaata 236  Q
    |||||| ||| ||||||||||| | |  | ||||||| || || ||||  |  |||| |||||||||||||||| |||||||||||||| |||  |||||    
T  11771582 ataaaacttggcaaacaaaagggagaataggaagattgacgaaattttttaaatgtacattcatatcaaggacagatgattgcaccaatttatgaaaata 11771681  T
Q  237 ttgtatgatttcgaataatttatgatttatcacaagatataacaaatacaaattgttggcttggaaaa----tcagatcacatcaaacttcaaattttgc 332  Q
    | | |||||||  ||| || ||||| | |||||||||||||| | |||| ||||  ||||||| ||||    |  |||   ||||||||||||| | ||     
T  11771682 tcgcatgatttaaaatcatctatgactcatcacaagatataatacatacgaattaatggcttgcaaaatatttttgattgaatcaaacttcaaactatgt 11771781  T
Q  333 cagcatattataatcaaccgacatgattttgcagttttattttataaacatagcaattaataatgaagagagtaaggaacttctgtagttaatcctatcc 432  Q
    || || | ||||   ||   |||||||||||||| ||| ||||||||| || |||||||||||   |||||  ||| ||||| |  ||||||| ||| ||    
T  11771782 caacagaatata---aatatacatgattttgcagctttgttttataaatatggcaattaataacttagagaaaaagcaacttttaaagttaatactaacc 11771878  T
Q  433 atattaattttatatacccacatttcaaccttcacaaactattacaattaatatcataaataaaaaatat 502  Q
     | | | |||||||||||||||||  | ||| || ||||| ||||||||| | |||||||||| ||||||    
T  11771879 ctctaagttttatatacccacattagatcctgcataaactgttacaattagtctcataaataagaaatat 11771948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 603 - 683
Target Start/End: Original strand, 21058200 - 21058280
Alignment:
Q  603 gacaattttgtagtccctttttcaagccttttctgttgtgtttttgttgatggcttattttataatatgcttagttaaaaa 683  Q
    |||||||||||||||||||||| ||||||||| | |||||||||||||||||  |||||||||||||||||||||||||||    
T  21058200 gacaattttgtagtcccttttttaagccttttttattgtgtttttgttgatgagttattttataatatgcttagttaaaaa 21058280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 602 - 699
Target Start/End: Original strand, 15682783 - 15682884
Alignment:
Q  602 tgacaattttgtagtccctttttcaagccttttctgt---tgtgtttttgttgatggcttattttataatatgcttagtt-aaaaaatgcgatagatagt 697  Q
    |||||||||||||||||||||||||||| |||| | |   ||||||||||||||||  |||||||||||||||||||||| |||||||||||||||||||    
T  15682783 tgacaattttgtagtccctttttcaagctttttttttgtgtgtgtttttgttgatgagttattttataatatgcttagttaaaaaaatgcgatagatagt 15682882  T
Q  698 tg 699  Q
    ||    
T  15682883 tg 15682884  T

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Target: chr6; HSP #6
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 32 - 220
Target Start/End: Original strand, 13374360 - 13374548
Alignment:
Q  32 aaacatatattcatatcactgacattcatgcgagatgggcatgaattgttgcaattctatgtagttgatatgaatgtatgatgtaacaaattttcaattt 131  Q
    |||||||||||| ||||||||||||||| | ||  || |||||||||| ||||||||||| |  ||||||||||||||  || |||||||||| ||||||    
T  13374360 aaacatatattcgtatcactgacattcaagtga--tgtgcatgaattgatgcaattctatttcattgatatgaatgtacaatttaacaaatttccaattt 13374457  T
Q  132 atattataaaaattgacaaacaaaag---gaataggaagaagattaacaaatttttcgacttgtatattcatatcaaggacatatgattgca 220  Q
    ||| || |||||||| |||| | |||   ||||||||||||| ||||| ||  ||| || ||||| |||||||||||||||| ||| |||||    
T  13374458 ata-tacaaaaattggcaaaaagaaggaagaataggaagaagtttaacgaaaattttgaattgtacattcatatcaaggacacatggttgca 13374548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 37 - 278
Target Start/End: Complemental strand, 13333039 - 13332797
Alignment:
Q  37 tatattcatatcactgacattcatgcgagatgggcatgaattgttgcaattctatgt-agttgatatgaatgtatgatgtaacaaattttcaatttatat 135  Q
    |||||||||||||||||||||||||||| ||  |||||||||||| ||||||| ||| | |  ||||||||||| ||| |||  |||||| ||||| |||    
T  13333039 tatattcatatcactgacattcatgcgacat--gcatgaattgtttcaattctgtgtcattaaatatgaatgtacgatttaa-taatttttaatttctat 13332943  T
Q  136 tataaaaattgacaaacaaaag---gaataggaagaagattaacaaatttttcgacttgtatattcatatcaaggacatatgattgcaccaatatataca 232  Q
    ||||||||||  |||||||| |   |||| |||||||||||||||||    |  | || || |||||||||| ||||| || ||||||||||| ||| ||    
T  13332942 tataaaaatttgcaaacaaaggggagaatgggaagaagattaacaaaaaaatttaattctacattcatatcagggacacattattgcaccaatttatgca 13332843  T
Q  233 aatattgtatgatttcgaataatttatgatttatcacaagatataa 278  Q
    ||||||| |||||||  ||| ||| |||| | |||||||| |||||    
T  13332842 aatattgcatgatttaaaatcattcatgactcatcacaaggtataa 13332797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 626 - 704
Target Start/End: Original strand, 21058283 - 21058362
Alignment:
Q  626 aagccttttctgttgtgtttttgttgatggcttattttataatatgcttagtt-aaaaaatgcgatagatagttgatgtc 704  Q
    |||||||||||||||||||||||||||| | |||||||||||||||||||||| |||||||| |||||||||||| ||||    
T  21058283 aagccttttctgttgtgtttttgttgattgattattttataatatgcttagttaaaaaaatgtgatagatagttggtgtc 21058362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 314 - 502
Target Start/End: Complemental strand, 11774623 - 11774434
Alignment:
Q  314 atcaaacttcaaattttgccagcatattataatcaaccgacatgattttgcagtt-ttattttataaacatagcaattaataatgaagagagtaaggaac 412  Q
    ||||||||||||| | || || |||| ||||||  |||||||||||||||||  | || ||||||||| || ||||||||||| |||| ||  ||| |||    
T  11774623 atcaaacttcaaactatgtcaacataatataatataccgacatgattttgcacctctttttttataaatatggcaattaataacgaagggaacaagcaac 11774524  T
Q  413 ttctgtagttaatcctatccatattaattttatatacccacatttcaaccttcacaaactattacaattaatatcataaataaaaaatat 502  Q
    || || ||||| | |||||| | | | |||||||||||||||||  | ||| || ||| | ||| |||||||||||||||||| ||||||    
T  11774523 ttttgaagttagtactatccctctaagttttatatacccacattaaatcctgcataaattgttaaaattaatatcataaataagaaatat 11774434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 515 - 565
Target Start/End: Original strand, 7438600 - 7438650
Alignment:
Q  515 atattatcaactatatgttctgcttcattttttatacaatctgctatatat 565  Q
    ||||||||| ||||||||||||||||||||||||||| |||||||||||||    
T  7438600 atattatcagctatatgttctgcttcattttttatactatctgctatatat 7438650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 307 - 433
Target Start/End: Original strand, 13374654 - 13374780
Alignment:
Q  307 agatcacatcaaacttcaaattttgccagcatattataatcaaccgacatgattttgcagttttattttataaacatagcaattaataatgaagagagta 406  Q
    |||||| |||||||||||| || || || || | | ||||| || ||||||||||||| | ||| |||||||||||||||||||||||| |||||||  |    
T  13374654 agatcaaatcaaacttcaacttatgtcaacagaatgtaatctactgacatgattttgctgctttcttttataaacatagcaattaataacgaagagaaca 13374753  T
Q  407 aggaacttctgtagttaatcctatcca 433  Q
    || ||||| || | ||||| |||||||    
T  13374754 agcaacttttgaacttaatactatcca 13374780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 515 - 569
Target Start/End: Complemental strand, 15873332 - 15873278
Alignment:
Q  515 atattatcaactatatgttctgcttcattttttatacaatctgctatatatccgt 569  Q
    ||||||||||||| ||||| ||||||| |||||||||||||||||||||||||||    
T  15873332 atattatcaactaaatgttatgcttcaatttttatacaatctgctatatatccgt 15873278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 515 - 569
Target Start/End: Original strand, 21058102 - 21058156
Alignment:
Q  515 atattatcaactatatgttctgcttcattttttatacaatctgctatatatccgt 569  Q
    ||||||||||||| ||||||| ||||| ||||||||||||||| |||||||||||    
T  21058102 atattatcaactaaatgttctacttcagtttttatacaatctgttatatatccgt 21058156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 343 - 492
Target Start/End: Complemental strand, 13314935 - 13314786
Alignment:
Q  343 taatcaaccgacatgattttgcagttttattttataaacatagcaattaataatgaagagagtaaggaacttctgtagttaatcctatccatattaattt 442  Q
    ||||| ||||||||||| ||| || ||| ||||| ||||||| |||||||||| ||| |||  ||| ||||| || ||||||| | |||||  | | |||    
T  13314935 taatctaccgacatgatcttggagctttcttttaaaaacataacaattaataacgaaaagaacaagcaacttttgaagttaatacaatccaactaagttt 13314836  T
Q  443 tatatacccacatttcaaccttcacaaactattacaattaatatcataaa 492  Q
    ||||||||||||||  | | | || ||||| || ||||||||||||||||    
T  13314835 tatatacccacattcgagcgtgcaaaaactgttgcaattaatatcataaa 13314786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 319 - 391
Target Start/End: Original strand, 13374582 - 13374654
Alignment:
Q  319 acttcaaattttgccagcatattataatcaaccgacatgattttgcagttttattttataaacatagcaatta 391  Q
    |||||||||| || || || | ||||||| ||||||||| |||||||| ||| ||| ||||||||||||||||    
T  13374582 acttcaaattctgtcaacagaatataatctaccgacatggttttgcagatttctttcataaacatagcaatta 13374654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 439 - 502
Target Start/End: Complemental strand, 13332713 - 13332650
Alignment:
Q  439 attttatatacccacatttcaaccttcacaaactattacaattaatatcataaataaaaaatat 502  Q
    ||||||||||||||||||  | | | || ||||| |||||||||||||||||||||| ||||||    
T  13332713 attttatatacccacattagatcatgcataaactgttacaattaatatcataaataagaaatat 13332650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 603 - 641
Target Start/End: Original strand, 7438701 - 7438739
Alignment:
Q  603 gacaattttgtagtccctttttcaagccttttctgttgt 641  Q
    |||| |||||||||||||||||| |||||||||||||||    
T  7438701 gacagttttgtagtccctttttctagccttttctgttgt 7438739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 93
Target Start/End: Complemental strand, 13342929 - 13342879
Alignment:
Q  41 ttcatatcactgacattcatgcgagatgggcatgaattgttgcaattctatgt 93  Q
    ||||||||||||||||||||||  || | |||||||||| |||||||||||||    
T  13342929 ttcatatcactgacattcatgc--gacgtgcatgaattggtgcaattctatgt 13342879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 515 - 567
Target Start/End: Original strand, 15682671 - 15682730
Alignment:
Q  515 atattatcaactatatgttctgcttca-------ttttttatacaatctgctatatatcc 567  Q
    |||||||||||||||||||||||||||       |||||||||||||| |||||||||||    
T  15682671 atattatcaactatatgttctgcttcatttttttttttttatacaatcagctatatatcc 15682730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 104; Significance: 2e-51; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 515 - 704
Target Start/End: Complemental strand, 12976806 - 12976599
Alignment:
Q  515 atattatcaactatatgttctgcttcattttttatacaatctgctatatatccgtcnnnnnnnn--ctttgttctttggagcgcctatgt---------- 602  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||          |||||||||||||||| |||||||              
T  12976806 atattatcaactatatgctctgcttcattttttatacaatctgctatatatccgtcttttttttttctttgttctttggagcacctatgtctatgtgcat 12976707  T
Q  603 ------gacaattttgtagtccctttttcaagccttttctgttgtgtttttgttgatggcttattttataatatgcttagttaaaaaatgcgatagatag 696  Q
          |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12976706 gcacaggacaattttgtagtccctttttcaagccttttctattgtgtttttgttgatggcttattttataatatgcttagttaaaaaatgcgatagatag 12976607  T
Q  697 ttgatgtc 704  Q
    ||| ||||    
T  12976606 ttggtgtc 12976599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 515 - 704
Target Start/End: Original strand, 18293368 - 18293575
Alignment:
Q  515 atattatcaactatatgttctgcttcattttttatacaatctgctatatatccgtcnnnnnnnn--ctttgttctttggagcgcctatgt---------- 602  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||          |||||||||||||||| |||||||              
T  18293368 atattatcaactatatgttctacttcattttttatacaatctgctatatatccgtcttttttttttctttgttctttggagcacctatgtctatgtgcat 18293467  T
Q  603 ------gacaattttgtagtccctttttcaagccttttctgttgtgtttttgttgatggcttattttataatatgcttagttaaaaaatgcgatagatag 696  Q
          ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||    
T  18293468 gcacaggacaattttgtagtccctttttcaagccttttctgttgtgtttttattgatggcttattttataatatgcttagttaaaaaatgtgatagatag 18293567  T
Q  697 ttgatgtc 704  Q
    ||| ||||    
T  18293568 ttggtgtc 18293575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 95; Significance: 4e-46; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 602 - 704
Target Start/End: Original strand, 26447206 - 26447308
Alignment:
Q  602 tgacaattttgtagtccctttttcaagccttttctgttgtgtttttgttgatggcttattttataatatgcttagttaaaaaatgcgatagatagttgat 701  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |    
T  26447206 tgacaattttgtagtccctttttcaagccttttctgttgtgtttttgttgatggcttattttataatatgcttagttaaaaaatgtgatagatagttggt 26447305  T
Q  702 gtc 704  Q
    |||    
T  26447306 gtc 26447308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 602 - 699
Target Start/End: Original strand, 23543424 - 23543521
Alignment:
Q  602 tgacaattttgtagtccctttttcaagccttttctgttgtgtttttgttgatggcttattttataatatgcttagttaaaaaatgcgatagatagttg 699  Q
    ||||||||||||||||| |||||||||  |||| |  ||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||    
T  23543424 tgacaattttgtagtccatttttcaagattttttttgtgtgtttttgttgatggattattttataatatgcttagttaaaaaatgtgatagatagttg 23543521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 515 - 565
Target Start/End: Original strand, 23543324 - 23543375
Alignment:
Q  515 atattatcaactatatgttctgcttca-ttttttatacaatctgctatatat 565  Q
    ||||||||||||||||||||||||||| |||||||||||||| |||||||||    
T  23543324 atattatcaactatatgttctgcttcatttttttatacaatcagctatatat 23543375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 75; Significance: 4e-34; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 602 - 699
Target Start/End: Complemental strand, 17885360 - 17885262
Alignment:
Q  602 tgacaattttgtagtccctttttcaagccttttctgtt-gtgtttttgttgatggcttattttataatatgcttagttaaaaaatgcgatagatagttg 699  Q
    ||||||||||||||||||||||||||||||||| | || |||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||    
T  17885360 tgacaattttgtagtccctttttcaagccttttttatttgtgtttttgttgatgggttattttataatatgcttagttaaaaaatgtgatagatagttg 17885262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 515 - 699
Target Start/End: Original strand, 25091661 - 25091872
Alignment:
Q  515 atattatcaactatatgttctgcttcatttttt----atacaatctgctatatatccgtcnnnnnnnn-ctttgttctttggagcgcctatgt------- 602  Q
    |||||||||||||||||||||||||||||||||    |||||||| ||||||||||||||         ||||||||||||||||||||||||           
T  25091661 atattatcaactatatgttctgcttcattttttttttatacaatcagctatatatccgtctttttttttctttgttctttggagcgcctatgtctatgtg 25091760  T
Q  603 ---------gacaattttgtagtccctttttcaagccttttctgtt------gtgtttttgttgatggcttattttataatatgcttagttaaaaaatgc 687  Q
             |||||||||||||||| ||||||||||||||| | ||      |||||||||||||||| ||||||||||||||||||||||||||||| |    
T  25091761 catgcacatgacaattttgtagtccttttttcaagcctttttttttttgtgtgtgtttttgttgatgggttattttataatatgcttagttaaaaaatac 25091860  T
Q  688 gatagatagttg 699  Q
    ||||||||||||    
T  25091861 gatagatagttg 25091872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 603 - 683
Target Start/End: Original strand, 4931470 - 4931548
Alignment:
Q  603 gacaattttgtagtccctttttcaagccttttctgttgtgtttttgttgatggcttattttataatatgcttagttaaaaa 683  Q
    |||||||||||||||||||||| ||||||||||||||||  |||||||||||| |||||||||||||||||||||||||||    
T  4931470 gacaattttgtagtcccttttttaagccttttctgttgt--ttttgttgatgggttattttataatatgcttagttaaaaa 4931548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 602 - 699
Target Start/End: Original strand, 8361584 - 8361683
Alignment:
Q  602 tgacaattttgtagtccctttttcaag--ccttttctgttgtgtttttgttgatggcttattttataatatgcttagttaaaaaatgcgatagatagttg 699  Q
    |||||||||||||||||||||||||||    |||| | |||||||||||||||||| ||||||||||||||||||||||||||||||  |||||||||||    
T  8361584 tgacaattttgtagtccctttttcaagtttttttttttttgtgtttttgttgatgggttattttataatatgcttagttaaaaaatgttatagatagttg 8361683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 626 - 699
Target Start/End: Original strand, 4931551 - 4931625
Alignment:
Q  626 aagccttttctgttgtgtttttgttgatggcttattttataatatgcttagtt-aaaaaatgcgatagatagttg 699  Q
    ||||||||||| |||||||||||||||||| |||||||||||||||||||||| |||||||| ||||||||||||    
T  4931551 aagccttttctattgtgtttttgttgatggattattttataatatgcttagttaaaaaaatgtgatagatagttg 4931625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 515 - 566
Target Start/End: Original strand, 4931360 - 4931411
Alignment:
Q  515 atattatcaactatatgttctgcttcattttttatacaatctgctatatatc 566  Q
    ||||||||||||| ||||| ||||||| ||||||||||||||||||||||||    
T  4931360 atattatcaactaaatgttttgcttcagtttttatacaatctgctatatatc 4931411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 515 - 565
Target Start/End: Original strand, 8361480 - 8361532
Alignment:
Q  515 atattatcaactatatgttctgcttca--ttttttatacaatctgctatatat 565  Q
    |||||||||||||||||||||||||||  |||||||||||||| || ||||||    
T  8361480 atattatcaactatatgttctgcttcattttttttatacaatcagccatatat 8361532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0229 (Bit Score: 71; Significance: 9e-32; HSPs: 1)
Name: scaffold0229
Description:

Target: scaffold0229; HSP #1
Raw Score: 71; E-Value: 9e-32
Query Start/End: Original strand, 602 - 704
Target Start/End: Complemental strand, 25284 - 25182
Alignment:
Q  602 tgacaattttgtagtccctttttcaagccttttctgttgtgtttttgttgatggcttattttataatatgcttagttaaaaaatgcgatagatagttgat 701  Q
    ||||||||||||||||||||||||||| ||||| |||||| ||||||||||| | || ||||||||||||||| |||||||||||||||||||||||| |    
T  25284 tgacaattttgtagtccctttttcaagtcttttttgttgtatttttgttgataggttgttttataatatgctttgttaaaaaatgcgatagatagttggt 25185  T
Q  702 gtc 704  Q
    |||    
T  25184 gtc 25182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 69; Significance: 1e-30; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 605 - 699
Target Start/End: Complemental strand, 27203700 - 27203604
Alignment:
Q  605 caattttgtagtccctttttcaagccttttctgtt-gtgtttttgttgatggcttattttataatatgcttagttaa-aaaatgcgatagatagttg 699  Q
    |||||||||||||||||||||||||||||| | || |||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||    
T  27203700 caattttgtagtccctttttcaagccttttttttttgtgtttttgttgatgggttattttataatatgcttagttaaaaaaatgcgatagatagttg 27203604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 605 - 699
Target Start/End: Complemental strand, 27858847 - 27858751
Alignment:
Q  605 caattttgtagtccctttttcaagccttttctgtt-gtgtttttgttgatggcttattttataatatgcttagttaa-aaaatgcgatagatagttg 699  Q
    |||||||||||||||||||||||||||||| | || |||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||    
T  27858847 caattttgtagtccctttttcaagccttttttttttgtgtttttgttgatgggttattttataatatgcttagttaaaaaaatgcgatagatagttg 27858751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 515 - 602
Target Start/End: Complemental strand, 27203812 - 27203719
Alignment:
Q  515 atattatcaactatatgttctgcttcatt-----ttttatacaatctgctatatatccgtc-nnnnnnnnctttgttctttggagcgcctatgt 602  Q
    |||||||||||||||||||||||||||||     |||||||||||| ||||||||||||||         ||||||||||||||||||||||||    
T  27203812 atattatcaactatatgttctgcttcatttttttttttatacaatcagctatatatccgtctttttttttctttgttctttggagcgcctatgt 27203719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 515 - 602
Target Start/End: Complemental strand, 27858959 - 27858866
Alignment:
Q  515 atattatcaactatatgttctgcttcatt-----ttttatacaatctgctatatatccgtc-nnnnnnnnctttgttctttggagcgcctatgt 602  Q
    |||||||||||||||||||||||||||||     |||||||||||| ||||||||||||||         ||||||||||||||||||||||||    
T  27858959 atattatcaactatatgttctgcttcatttttttttttatacaatcagctatatatccgtctttttttttctttgttctttggagcgcctatgt 27858866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 67; Significance: 2e-29; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 602 - 704
Target Start/End: Original strand, 1365469 - 1365570
Alignment:
Q  602 tgacaattttgtagtccctttttcaagccttttctgttgtgtttttgttgatggcttattttataatatgcttagttaaaaaatgcgatagatagttgat 701  Q
    |||||||||||||||||||||||||||| |||| |||||| ||||||||||| | || ||||||||||||||| |||||||||||||||||||||||| |    
T  1365469 tgacaattttgtagtccctttttcaagcttttt-tgttgtatttttgttgataggttgttttataatatgctttgttaaaaaatgcgatagatagttggt 1365567  T
Q  702 gtc 704  Q
    |||    
T  1365568 gtc 1365570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 515 - 699
Target Start/End: Complemental strand, 42026296 - 42026092
Alignment:
Q  515 atattatcaactatatgttctgcttcatttttt--atacaatctgctatatatccgtcnnnnnnnn-ctttgttctttggagcgcctatgt--------- 602  Q
    |||||||||||||||||||||||||||||||||  |||||||| ||||||||||||||         ||||||| ||||||||||||||||             
T  42026296 atattatcaactatatgttctgcttcattttttttatacaatcagctatatatccgtctttttttttctttgttttttggagcgcctatgtctatgtgca 42026197  T
Q  603 -------gacaattttgtagtccctttttcaagccttttctgt-tgtgtttttgttgatggcttattttataatatgcttagttaaaaaatgcgatagat 694  Q
           ||||||||||||||||||||||||||  |||| | | ||||||||||||||||| |||||||||||||| || |||||||||||| |||||||    
T  42026196 tgcacatgacaattttgtagtccctttttcaagttttttttttgtgtgtttttgttgatgggttattttataatatactcagttaaaaaatgtgatagat 42026097  T
Q  695 agttg 699  Q
    |||||    
T  42026096 agttg 42026092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 62; Significance: 2e-26; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 603 - 683
Target Start/End: Complemental strand, 13915574 - 13915496
Alignment:
Q  603 gacaattttgtagtccctttttcaagccttttctgttgtgtttttgttgatggcttattttataatatgcttagttaaaaa 683  Q
    |||||||||||||||||||||| ||||||||||||||||  |||||||||||| |||||||||||||||||||||||||||    
T  13915574 gacaattttgtagtcccttttttaagccttttctgttgt--ttttgttgatgggttattttataatatgcttagttaaaaa 13915496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 626 - 699
Target Start/End: Complemental strand, 13915493 - 13915419
Alignment:
Q  626 aagccttttctgttgtgtttttgttgatggcttattttataatatgcttagttaa-aaaatgcgatagatagttg 699  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||| ||||||||||||    
T  13915493 aagccttttctgttgtgtttttgttgatggattattttataatatgcttagttaaaaaaatgtgatagatagttg 13915419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 602 - 699
Target Start/End: Complemental strand, 14249570 - 14249473
Alignment:
Q  602 tgacaattttgtagtccctttttcaagccttttctgt-tgtgtttttgttgatggcttattttataatatgcttagttaaaaaatgcgatagatagttg 699  Q
    |||||||||||||||||||||| ||||  |||| | | ||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||    
T  14249570 tgacaattttgtagtccctttt-caaggtttttttttgtgtgtttttgttgatgggttattttataatatgcttagttaaaaaatgtgatagatagttg 14249473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 515 - 566
Target Start/End: Complemental strand, 13915678 - 13915627
Alignment:
Q  515 atattatcaactatatgttctgcttcattttttatacaatctgctatatatc 566  Q
    ||||||||||||| ||||||||||||| ||||||||||||||||||||||||    
T  13915678 atattatcaactaaatgttctgcttcagtttttatacaatctgctatatatc 13915627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 515 - 602
Target Start/End: Complemental strand, 14249677 - 14249586
Alignment:
Q  515 atattatcaactat-atgttctgcttcatttt--ttatacaatctgctatatatccgtc-nnnnnnnnctttgttctttggagcgcctatgt 602  Q
    |||||||||||||| |||||||||||||||||  |||||||||| ||||||||||||||         ||||||||||||||||||||||||    
T  14249677 atattatcaactatcatgttctgcttcattttgtttatacaatcagctatatatccgtctttttttttctttgttctttggagcgcctatgt 14249586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 62; Significance: 2e-26; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 602 - 699
Target Start/End: Original strand, 38357442 - 38357538
Alignment:
Q  602 tgacaattttgtagtccctttttcaagccttttctgttgtgtttttgttgatggcttattttataatatgcttagttaaaaaatgcgatagatagttg 699  Q
    |||||||||||||||||||||||||||| |||| ||| ||||||||||||||   |||||||||||||||||||||||||||||| |||| |||||||    
T  38357442 tgacaattttgtagtccctttttcaagctttttttgt-gtgtttttgttgataaattattttataatatgcttagttaaaaaatgtgatatatagttg 38357538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 626 - 704
Target Start/End: Complemental strand, 35684101 - 35684022
Alignment:
Q  626 aagccttttctgttgtgtttttgttgatggcttattttataatatgcttagttaa-aaaatgcgatagatagttgatgtc 704  Q
    |||||||||||||||||||||||||||||| |||||||||||||| ||||||||| |||||| |||||||||||| ||||    
T  35684101 aagccttttctgttgtgtttttgttgatggattattttataatatacttagttaaaaaaatgtgatagatagttggtgtc 35684022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 603 - 683
Target Start/End: Complemental strand, 35684182 - 35684104
Alignment:
Q  603 gacaattttgtagtccctttttcaagccttttctgttgtgtttttgttgatggcttattttataatatgcttagttaaaaa 683  Q
    ||||||||| |||||||||||| ||| ||||||||||||  |||||||||||| |||||||||||||||||||||||||||    
T  35684182 gacaattttatagtcccttttttaagtcttttctgttgt--ttttgttgatgggttattttataatatgcttagttaaaaa 35684104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 641 - 699
Target Start/End: Complemental strand, 20776755 - 20776697
Alignment:
Q  641 tgtttttgttgatggcttattttataatatgcttagttaaaaaatgcgatagatagttg 699  Q
    ||||||||||||||  |||||||||||||||||||||||||||||| ||||||||||||    
T  20776755 tgtttttgttgatgagttattttataatatgcttagttaaaaaatgtgatagatagttg 20776697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 515 - 566
Target Start/End: Complemental strand, 35684310 - 35684259
Alignment:
Q  515 atattatcaactatatgttctgcttcattttttatacaatctgctatatatc 566  Q
    ||||||||||||| ||||||||||||| ||||||||||||||||||||||||    
T  35684310 atattatcaactaaatgttctgcttcagtttttatacaatctgctatatatc 35684259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 515 - 570
Target Start/End: Original strand, 38357330 - 38357387
Alignment:
Q  515 atattatcaactatatgttctgcttca--ttttttatacaatctgctatatatccgtc 570  Q
    |||||||||||||||||||||||||||  |||||||||||||| ||||||||||||||    
T  38357330 atattatcaactatatgttctgcttcattttttttatacaatcagctatatatccgtc 38357387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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