View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7704_low_5 (Length: 616)
Name: NF7704_low_5
Description: NF7704
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7704_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 277; Significance: 1e-155; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 301 - 600
Target Start/End: Complemental strand, 44650138 - 44649841
Alignment:
| Q |
301 |
tcaaatcgatcaccatactgttcttaaaacataaaactgaataattacgtgaagttcaagagaattctgcttcagaaaaattaatccttttgcaatatga |
400 |
Q |
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| T |
44650138 |
tcaaatcgatcaccatactgttcttaaaacataaaactgaataattacgtgaagttcaagagaattctgcttcagaaaaattaatcctt--gcaataaga |
44650041 |
T |
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| Q |
401 |
agttcaagagataatatggtcatataagaatgtttttgatccacatgcatattttcgagtaaaccaatgatcttgagctgaataaattcattaaaacttt |
500 |
Q |
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| T |
44650040 |
agttcaagagataatatggtcatataagaatgtttttgatccacttgcatattttcgagtaaaccaatgatcttgagctgaataaattcattaaaacttt |
44649941 |
T |
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| Q |
501 |
gaatggagccagaaaatatatcacaagatcctccacttctcaaagaaaagcttcaattataccaaaacaagtgtctacataaatttatttgtcttagtag |
600 |
Q |
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| T |
44649940 |
gaatgaagccagaaaatatatcacaagatcctccacttctcaaagaaaagcttcaattataccaaaacaagtgtctacataaatttatttgtcttagtag |
44649841 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 10 - 264
Target Start/End: Complemental strand, 44650385 - 44650135
Alignment:
| Q |
10 |
aatattccaattggagaagaaatggaatcacaacttctacagtttgcaaagaaattacgctgaggaaggggaaagagtgagccatgttctaataatattc |
109 |
Q |
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| T |
44650385 |
aatattccaattggagaagaaatggaatcacaacttctacagtttgcaaagaaattacgctgaggaaggggaaagagtgagccatgttctaataatattc |
44650286 |
T |
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| Q |
110 |
caatttttattttggatgtacgatcaaataaattaaacagttgagatattggtgtacgtatctagtaataaactagagggagtctctatatatatcattt |
209 |
Q |
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| T |
44650285 |
caatttttattttggatgtacgatcaaataaattaaacagttgagattttggtgtacgtatctagtaataaactagagggagtctct----atatcattt |
44650190 |
T |
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| Q |
210 |
aagcaagcctaagggggaggtgagtgtaattttaactagtgactccatggttcaa |
264 |
Q |
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| T |
44650189 |
aagcaagcctaagggggaggtgagtgtaattttaactagtgactccatggttcaa |
44650135 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 128 - 156
Target Start/End: Complemental strand, 31552066 - 31552038
Alignment:
| Q |
128 |
tacgatcaaataaattaaacagttgagat |
156 |
Q |
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| T |
31552066 |
tacgatcaaataaattaaacagttgagat |
31552038 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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