View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7704_low_6 (Length: 577)

Name: NF7704_low_6
Description: NF7704
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7704_low_6
NF7704_low_6
[»] chr3 (8 HSPs)
chr3 (18-556)||(9450327-9450863)
chr3 (18-549)||(28838376-28838903)
chr3 (293-557)||(17724449-17724713)
chr3 (293-557)||(19025678-19025942)
chr3 (276-549)||(28830411-28830682)
chr3 (381-542)||(26640704-26640865)
chr3 (383-541)||(20798757-20798914)
chr3 (18-108)||(28830694-28830789)
[»] chr1 (3 HSPs)
chr1 (18-553)||(1466406-1466933)
chr1 (369-549)||(35923212-35923392)
chr1 (382-544)||(5050499-5050661)
[»] chr7 (8 HSPs)
chr7 (386-549)||(19538748-19538911)
chr7 (383-547)||(19545401-19545565)
chr7 (383-539)||(47228519-47228675)
chr7 (383-508)||(47465706-47465831)
chr7 (383-512)||(19549755-19549885)
chr7 (399-512)||(19554968-19555081)
chr7 (131-173)||(47466716-47466758)
chr7 (406-463)||(19551972-19552029)
[»] chr5 (7 HSPs)
chr5 (369-549)||(19242369-19242549)
chr5 (383-542)||(9211371-9211530)
chr5 (383-542)||(9369955-9370114)
chr5 (387-549)||(12560131-12560294)
chr5 (369-549)||(38783798-38783978)
chr5 (383-544)||(35181989-35182150)
chr5 (391-515)||(12556892-12557016)
[»] chr8 (4 HSPs)
chr8 (383-541)||(9939644-9939802)
chr8 (385-549)||(9937274-9937438)
chr8 (385-543)||(9945694-9945855)
chr8 (410-524)||(3427899-3428013)
[»] chr4 (2 HSPs)
chr4 (383-542)||(44089673-44089832)
chr4 (496-541)||(38052155-38052200)
[»] chr2 (3 HSPs)
chr2 (458-547)||(7959610-7959699)
chr2 (387-451)||(43924042-43924105)
chr2 (473-513)||(43923991-43924031)


Alignment Details
Target: chr3 (Bit Score: 516; Significance: 0; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 516; E-Value: 0
Query Start/End: Original strand, 18 - 556
Target Start/End: Original strand, 9450327 - 9450863
Alignment:
Q  18 caaagatatcactagttcatctaaaaataccagtttccacagctgcagtggtaaaatttgttgtatcccaatggaagtggcaaatatgtgtttcaactat 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9450327 caaagatatcactagttcatctaaaaataccagtttccacagctgcagtggtaaaatttgttgtatcccaatggaagtggcaaatatgtgtttcaactat 9450426  T
Q  118 attatattctgtgattgaaagtcatagttgagacatacaactcgtgcattaaatcttggagacaaattcgtcctagtttagattttcaaaatgatgttgt 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9450427 attatattctgtgattgaaagtcatagttgagacatacaactcgtgcattaaatcttggagacaaattcgtcctagtttagattttcaaaatgatgttgt 9450526  T
Q  218 agccagtacgaatggatatatccaattgtttagaaagaatattgaaagcacaaacaaaagtagtgtgtgcaaatgtgtatgtgaaacaataagtcccaca 317  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  || ||||||||||||||||||||||    
T  9450527 agccattacgaatggatatatccaattgtttagaaagaatattgaaagcacaaacaaaagtagtgtgtgcaaa--tgcatgtgaaacaataagtcccaca 9450624  T
Q  318 tcgacaatatcagacacagaggtgtggaaagtgggatatataaagaaaggctatggcattggattacatacttacctggatggggtcaatgggtgatcaa 417  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9450625 tcgacaatatcagacacagaggtgtggaaagtgggatatataaagaaaggctatggcattggattacatacttacctggatggggtcaatgggtgatcaa 9450724  T
Q  418 gaaggcccatggcctaggaaggtgaccttcattgcactttggaggggtgccttcctaaggtctacccaagtggtggagcctacatcataatttgttgctg 517  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9450725 gaaggcccatggcctaggaaggtgacctccattgcactttggaggggtgccttcctaaggtctacccaagtggtggagcctacatcataatttgttgctg 9450824  T
Q  518 tgggggcctgcgttcgcgcggccccctccaatcttattt 556  Q
    |||||||||||||||||||||||||||||||||||||||    
T  9450825 tgggggcctgcgttcgcgcggccccctccaatcttattt 9450863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 18 - 549
Target Start/End: Complemental strand, 28838903 - 28838376
Alignment:
Q  18 caaagatatcactagttcatctaaaaataccagtttccacagctgcagtggtaaaatttgttgtatcccaatggaagtggcaaatatgtgtttcaactat 117  Q
    |||| ||||||| ||| || |||||| || | |||||||||||| || |||||||||||||| ||| |||||||||||| |||||||||||||||| |||    
T  28838903 caaatatatcaccagtacaactaaaactatcggtttccacagctacaatggtaaaatttgttatattccaatggaagtgacaaatatgtgtttcaagtat 28838804  T
Q  118 attatattctgtgattgaaagtcatagttgagacatacaactcgtgcattaaatcttggagacaaattcgtcctagtttagattttcaaaatgatgttgt 217  Q
    ||||||||||||||||||||||| | ||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  28838803 attatattctgtgattgaaagtcttggttgagacatacaactcatgcattaaatcttggagacaaattcgtcctagttttgattttcaaaatgatgttgt 28838704  T
Q  218 agccagtacgaatggatatatccaattgtttagaaagaatattgaaagcacaaacaaaagtagtgtgtgcaaatgtgtatgtgaaacaataagtcccaca 317  Q
    ||||| | | ||||||||   |||||||||||||||||||||||||||||||||||| ||||||||||||||||||  ||||||||||||| ||||||||    
T  28838703 agccattccaaatggatac--ccaattgtttagaaagaatattgaaagcacaaacaacagtagtgtgtgcaaatgt--atgtgaaacaatatgtcccaca 28838608  T
Q  318 tcgacaatatcagacacagaggtgtggaaagtgggatatataaagaaaggctatggcattggattacatacttacctggatggggtcaatgggtgatcaa 417  Q
    ||||||||||||||||||  |||| ||||||||||||||||||||||||| |||||||||| |||| |||||||||||||||||||||||||||||||||    
T  28838607 tcgacaatatcagacacaatggtgaggaaagtgggatatataaagaaagggtatggcattgtattatatacttacctggatggggtcaatgggtgatcaa 28838508  T
Q  418 gaaggcccatggcctaggaaggtgaccttcattgcactttggaggggtgccttcctaaggtctacccaagtggtggagcctacatcataatttgttgctg 517  Q
    |||||||||||||||||||||||||||| |||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  28838507 gaaggcccatggcctaggaaggtgacctccattgcacttaggaggggtgcctttctaaggtctacccaagtggtggagcctacatcataatttgttgctg 28838408  T
Q  518 tgggggcctgcgttcgcgcggccccctccaat 549  Q
    ||||||||||||||||||||||||||||||||    
T  28838407 tgggggcctgcgttcgcgcggccccctccaat 28838376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 293 - 557
Target Start/End: Original strand, 17724449 - 17724713
Alignment:
Q  293 tgtatgtgaaacaataagtcccacatcgacaatatcagacacagaggtgtggaaagtgggatatataaagaaaggctatggcattggattacatacttac 392  Q
    |||||||||||||||| |||||||||||||||||||| |||||| |||| |||||||| |||||||||||||||| ||||| ||||||||||||||||||    
T  17724449 tgtatgtgaaacaatatgtcccacatcgacaatatcaaacacagcggtgaggaaagtgtgatatataaagaaagggtatggtattggattacatacttac 17724548  T
Q  393 ctggatggggtcaatgggtgatcaagaaggcccatggcctaggaaggtgaccttcattgcactttggaggggtgccttcctaaggtctacccaagtggtg 492  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| | |||||||||||||||||||||||||||||||||||    
T  17724549 ctggatggggtcaatgggtgatcaagaaggcccatggcctaggaaggtgacctccattgcacataggaggggtgccttcctaaggtctacccaagtggtg 17724648  T
Q  493 gagcctacatcataatttgttgctgtgggggcctgcgttcgcgcggccccctccaatcttatttt 557  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  17724649 gagcctacatcataatttgttgctgtgggggcctgcgttcgcgcggccccctctaatcttatttt 17724713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 293 - 557
Target Start/End: Original strand, 19025678 - 19025942
Alignment:
Q  293 tgtatgtgaaacaataagtcccacatcgacaatatcagacacagaggtgtggaaagtgggatatataaagaaaggctatggcattggattacatacttac 392  Q
    |||||||||||||||| |||||||||||||||||||| |||||| |||| |||||||| |||||||||||||||| ||||| ||||||||||||||||||    
T  19025678 tgtatgtgaaacaatatgtcccacatcgacaatatcaaacacagcggtgaggaaagtgtgatatataaagaaagggtatggtattggattacatacttac 19025777  T
Q  393 ctggatggggtcaatgggtgatcaagaaggcccatggcctaggaaggtgaccttcattgcactttggaggggtgccttcctaaggtctacccaagtggtg 492  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| | |||||||||||||||||||||||||||||||||||    
T  19025778 ctggatggggtcaatgggtgatcaagaaggcccatggcctaggaaggtgacctccattgcacataggaggggtgccttcctaaggtctacccaagtggtg 19025877  T
Q  493 gagcctacatcataatttgttgctgtgggggcctgcgttcgcgcggccccctccaatcttatttt 557  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  19025878 gagcctacatcataatttgttgctgtgggggcctgcgttcgcgcggccccctctaatcttatttt 19025942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 276 - 549
Target Start/End: Complemental strand, 28830682 - 28830411
Alignment:
Q  276 agtagtgtgtgcaaatgtgtatgtgaaacaataagtcccacatcgacaatatcagacacagaggtgtggaaagtgggatatataaagaaaggctatggca 375  Q
    |||||||||||||||||   |||||||||||||||||||||||||||||||||||| | ||  ||| ||||||||||||||| ||||||||| |||||||    
T  28830682 agtagtgtgtgcaaatgc--atgtgaaacaataagtcccacatcgacaatatcagatagagcagtgaggaaagtgggatataaaaagaaagggtatggca 28830585  T
Q  376 ttggattacatacttacctggatggggtcaatgggtgatcaagaaggcccatggcctaggaaggtgaccttcattgcactttggaggggtgccttcctaa 475  Q
    |||||||| ||||||||||||||||||||||||| |||||||||||| ||||||||||| |||||||||| |||||||||| |||||||||| || ||||    
T  28830584 ttggattatatacttacctggatggggtcaatggatgatcaagaaggtccatggcctagaaaggtgacctccattgcacttaggaggggtgcttttctaa 28830485  T
Q  476 ggtctacccaagtggtggagcctacatcataatttgttgctgtgggggcctgcgttcgcgcggccccctccaat 549  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||    
T  28830484 ggtctacccaagtggtggagcctacatcataatttgttgttgtgggggcctgcgttcgcgcggccccttccaat 28830411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 381 - 542
Target Start/End: Original strand, 26640704 - 26640865
Alignment:
Q  381 ttacatacttacctggatggggtcaatgggtgatcaagaaggcccatggcctaggaaggtgaccttcattgcactttggaggggtgccttcctaaggtct 480  Q
    |||| ||||||||||||||||||| |||||||||||||||||||||||||||||  | ||||||| |||||||||| ||||||||||    |||||||||    
T  26640704 ttacttacttacctggatggggtcgatgggtgatcaagaaggcccatggcctagacaagtgacctccattgcacttaggaggggtgctagtctaaggtct 26640803  T
Q  481 acccaagtggtggagcctacatcataatttgttgctgtgggggcctgcgttcgcgcggcccc 542  Q
    |||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||    
T  26640804 acccaagtggtggaacctacatcataatttgttgcagtgggggcctgcgttcgcgcggcccc 26640865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 383 - 541
Target Start/End: Complemental strand, 20798914 - 20798757
Alignment:
Q  383 acatacttacctggatggggtcaatgggtgatcaagaaggcccatggcctaggaaggtgaccttcattgcactttggaggggtgccttcctaaggtctac 482  Q
    |||||||||||||||||||||||||||||||||||||| |  ||||||||||| | ||||||| |||||||||| |||  |||||   ||||||||||||    
T  20798914 acatacttacctggatggggtcaatgggtgatcaagaatgttcatggcctaggcaagtgacctccattgcacttaggaaaggtgctagcctaaggtctac 20798815  T
Q  483 ccaagtggtggagcctacatcataatttgttgctgtgggggcctgcgttcgcgcggccc 541  Q
    ||||||||||||||||||||||||||||||||| |  ||||| ||||||||||| ||||    
T  20798814 ccaagtggtggagcctacatcataatttgttgcag-cggggcttgcgttcgcgcagccc 20798757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 18 - 108
Target Start/End: Complemental strand, 28830789 - 28830694
Alignment:
Q  18 caaagatatcactagttcatctaaaaataccagtttccacagctgcagtggtaaaatttg-----ttgtatcccaatggaagtggcaaatatgtgt 108  Q
    |||||||||||  |||||| |||||||||| ||||||| |||||||| ||||||||||||     ||||||||||||||||||| |||||||||||    
T  28830789 caaagatatcagcagttcacctaaaaatactagtttccgcagctgcaatggtaaaatttgtatatttgtatcccaatggaagtgacaaatatgtgt 28830694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 336; Significance: 0; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 18 - 553
Target Start/End: Original strand, 1466406 - 1466933
Alignment:
Q  18 caaagatatcactagttcatctaaaaataccagtttccacagctgcagtggtaaaatttgttgtatcccaatggaagtggcaaatatgtgtttcaactat 117  Q
    |||||||||||| |||||| ||||||||| ||||||||||||||||| ||||  |||||||   ||||||||||||||| |||||||||||||||| |||    
T  1466406 caaagatatcaccagttcaactaaaaatatcagtttccacagctgcaatggtttaatttgt---atcccaatggaagtgacaaatatgtgtttcaagtat 1466502  T
Q  118 attatatt-----ctgtgattgaaagtcatagttgagacatacaactcgtgcattaaatcttgg-agacaaattcgtcctagtttagattttcaaaatga 211  Q
    ||||||||     |||||||||       | |||||||||||||||| |||||||||||||||| ||||||||| |||||||||||||||||||||||||    
T  1466503 attatattacattctgtgattg-------tggttgagacatacaactggtgcattaaatcttgggagacaaatttgtcctagtttagattttcaaaatga 1466595  T
Q  212 tgttgtagccagtacgaatggatatatccaattgtttagaaagaatattgaaagcacaaacaaaagtagtgtgtgcaaatgtgtatgtgaaacaataagt 311  Q
    ||||||||||| ||| |||||||||  ||||||||||||||||||||| |||||||||||||| |||||  |||||||||||  ||||||||||||||||    
T  1466596 tgttgtagccattacaaatggatat--ccaattgtttagaaagaatatagaaagcacaaacaatagtagcttgtgcaaatgt--atgtgaaacaataagt 1466691  T
Q  312 cccacatcgacaatatcagacacagaggtgtggaaagtgggatatataaagaaaggctatggcattggattacatacttacctggatggggtcaatgggt 411  Q
    |||||||||||||||||| ||| || |||| ||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||    
T  1466692 cccacatcgacaatatcaaacagagcggtgaggaaagtgggatatataaagaaagggtatggcattggattaaatacttacctggatggggtcaatgggt 1466791  T
Q  412 gatcaagaaggcccatggcctaggaaggtgaccttcattgcactttggaggggtgccttcctaaggtctacccaagtggtggagcctacatcataatttg 511  Q
    ||||||||||||||||||||||| |||||||| | |||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  1466792 gatcaagaaggcccatggcctagaaaggtgacttccattgcacttaggaggggtgcctttctaaggtctacccaagtggtggagcctacatcataatttg 1466891  T
Q  512 ttgctgtgggggcctgcgttcgcgcggccccctccaatctta 553  Q
    ||||||||||||||||||||||||||||||||| ||||||||    
T  1466892 ttgctgtgggggcctgcgttcgcgcggcccccttcaatctta 1466933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 369 - 549
Target Start/End: Original strand, 35923212 - 35923392
Alignment:
Q  369 tatggcattggattacatacttacctggatggggtcaatgggtgatcaagaaggcccatggcctaggaaggtgaccttcattgcactttggaggggtgcc 468  Q
    |||||||||| ||||| ||||||||||||||||||||||||||||||| |||||||||||||||||| | ||||||| |||||||||| ||||||||||     
T  35923212 tatggcattgaattacttacttacctggatggggtcaatgggtgatcatgaaggcccatggcctaggcaagtgacctccattgcacttaggaggggtgct 35923311  T
Q  469 ttcctaaggtctacccaagtggtggagcctacatcataatttgttgctgtgggggcctgcgttcgcgcggccccctccaat 549  Q
    | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  35923312 tgcctaaggtctacccaagtggtggagcctacatcataatttgttgctgtgggggcctgcgttcgcgcggccccttccaat 35923392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 91; E-Value: 8e-44
Query Start/End: Original strand, 382 - 544
Target Start/End: Complemental strand, 5050661 - 5050499
Alignment:
Q  382 tacatacttacctggatggggtcaatgggtgatcaagaaggcccatggcctaggaaggtgaccttcattgcactttggaggggtgccttcctaaggtcta 481  Q
    |||||||||||||||||||||||||||| ||||||| |||| ||||||||||||  |||||||| |||||||||| ||||||||||   |||||||| |     
T  5050661 tacatacttacctggatggggtcaatggatgatcaaaaaggtccatggcctaggttggtgacctccattgcacttaggaggggtgctcgcctaaggtgtt 5050562  T
Q  482 cccaagtggtggagcctacatcataatttgttgctgtgggggcctgcgttcgcgcggccccct 544  Q
    | ||||| |   | |||||||||||||||||||||||||||||||||||||||||||||||||    
T  5050561 ctcaagtagaacaacctacatcataatttgttgctgtgggggcctgcgttcgcgcggccccct 5050499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 136; Significance: 1e-70; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 386 - 549
Target Start/End: Complemental strand, 19538911 - 19538748
Alignment:
Q  386 tacttacctggatggggtcaatgggtgatcaagaaggcccatggcctaggaaggtgaccttcattgcactttggaggggtgccttcctaaggtctaccca 485  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||| |||||||||||||||||||||  |||||||||||||| |    
T  19538911 tacttacctggatggggtcaatgggtgatcacgaaggcccatggcctaggaaagtgacctccattgcactttggaggggtgctatcctaaggtctaccta 19538812  T
Q  486 agtggtggagcctacatcataatttgttgctgtgggggcctgcgttcgcgcggccccctccaat 549  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  19538811 agtggtggagcctacatcataatttgttgctgtgggggcctgcgttcgcgcggcccccttcaat 19538748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 133; E-Value: 7e-69
Query Start/End: Original strand, 383 - 547
Target Start/End: Complemental strand, 19545565 - 19545401
Alignment:
Q  383 acatacttacctggatggggtcaatgggtgatcaagaaggcccatggcctaggaaggtgaccttcattgcactttggaggggtgccttcctaaggtctac 482  Q
    |||||||||||||||||||||||||||||||||| ||||||| ||||||||| || ||||||| |||||||||||||||||||||  | |||||||||||    
T  19545565 acatacttacctggatggggtcaatgggtgatcatgaaggcctatggcctagaaaagtgacctccattgcactttggaggggtgctcttctaaggtctac 19545466  T
Q  483 ccaagtggtggagcctacatcataatttgttgctgtgggggcctgcgttcgcgcggccccctcca 547  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19545465 ccaagtggtggagcctacatcataatttgttgctgtgggggcctgcgttcgcgcggccccctcca 19545401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 383 - 539
Target Start/End: Original strand, 47228519 - 47228675
Alignment:
Q  383 acatacttacctggatggggtcaatgggtgatcaagaaggcccatggcctaggaaggtgaccttcattgcactttggaggggtgccttcctaaggtctac 482  Q
    |||||||||||||||||||||||||||||||||| ||||||| ||||||||| |||||||||| |||||||||| |||||||||  || ||||||||||     
T  47228519 acatacttacctggatggggtcaatgggtgatcatgaaggcctatggcctagaaaggtgacctccattgcacttaggaggggtgtttttctaaggtctat 47228618  T
Q  483 ccaagtggtggagcctacatcataatttgttgctgtgggggcctgcgttcgcgcggc 539  Q
    |||||||||||||||||||| |||||||||||||| ||||| |||||||||||||||    
T  47228619 ccaagtggtggagcctacattataatttgttgctgagggggtctgcgttcgcgcggc 47228675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 383 - 508
Target Start/End: Complemental strand, 47465831 - 47465706
Alignment:
Q  383 acatacttacctggatggggtcaatgggtgatcaagaaggcccatggcctaggaaggtgaccttcattgcactttggaggggtgccttcctaaggtctac 482  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||| ||| |||||||||| |||||||||| || |||||||||||    
T  47465831 acatacttacctggatggggtcaatgggtgatcatgaaggcccatggcctagaaaggtggcctccattgcacttgggaggggtgcttttctaaggtctac 47465732  T
Q  483 ccaagtggtggagcctacatcataat 508  Q
     |||||||||||||||||||||||||    
T  47465731 tcaagtggtggagcctacatcataat 47465706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 383 - 512
Target Start/End: Complemental strand, 19549885 - 19549755
Alignment:
Q  383 acatacttacctggatggggtcaatgggtgatcaagaaggcccatggcctaggaaggtgaccttcattgcactttggaggggtgccttcctaaggtctac 482  Q
    |||||| |||||||| ||||||||||||||||||| |||||||||| |||||    ||||| | |||||||||| |||||| ||| |  ||||||   ||    
T  19549885 acatacatacctggacggggtcaatgggtgatcaataaggcccatgacctagacgagtgacttccattgcacttaggagggttgcttgtctaaggctcac 19549786  T
Q  483 ccaagtggtggag-cctacatcataatttgt 512  Q
    ||||||||||||| ||||| |||||||||||    
T  19549785 ccaagtggtggagacctacgtcataatttgt 19549755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 399 - 512
Target Start/End: Complemental strand, 19555081 - 19554968
Alignment:
Q  399 ggggtcaatgggtgatcaagaaggcccatggcctaggaaggtgaccttcattgcactttggaggggtgccttcctaaggtctacccaagtggtggagcct 498  Q
    ||||||||||| ||||||| |||| ||||| |||||    || |||| |||||||||| |||||| |||    |||||| | ||||||||||||| ||||    
T  19555081 ggggtcaatggatgatcaaaaaggtccatgacctagacgagtaacctccattgcacttaggagggttgctggtctaaggcccacccaagtggtggtgcct 19554982  T
Q  499 acatcataatttgt 512  Q
    || |||||||||||    
T  19554981 acgtcataatttgt 19554968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 131 - 173
Target Start/End: Complemental strand, 47466758 - 47466716
Alignment:
Q  131 attgaaagtcatagttgagacatacaactcgtgcattaaatct 173  Q
    |||||||||||| |||||| ||||||||||| |||||||||||    
T  47466758 attgaaagtcatggttgaggcatacaactcgagcattaaatct 47466716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 406 - 463
Target Start/End: Complemental strand, 19552029 - 19551972
Alignment:
Q  406 atgggtgatcaagaaggcccatggcctaggaaggtgaccttcattgcactttggaggg 463  Q
    ||||||||||||||||||||||| |||||    ||||||| |||||||||| ||||||    
T  19552029 atgggtgatcaagaaggcccatgacctagacgagtgacctccattgcacttaggaggg 19551972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 129; Significance: 2e-66; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 369 - 549
Target Start/End: Complemental strand, 19242549 - 19242369
Alignment:
Q  369 tatggcattggattacatacttacctggatggggtcaatgggtgatcaagaaggcccatggcctaggaaggtgaccttcattgcactttggaggggtgcc 468  Q
    |||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| |||||||||| ||||||||||     
T  19242549 tatgacattgaattacatacttacctggatggggtcaatgggtgatcaagaaggcccatggcctaggcaagtgacctccattgcacttaggaggggtgct 19242450  T
Q  469 ttcctaaggtctacccaagtggtggagcctacatcataatttgttgctgtgggggcctgcgttcgcgcggccccctccaat 549  Q
       |||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||| ||||||    
T  19242449 agtctaaggtctacccaagtggtggagcctacatcataatttgttgcagcgggggcctgcgttcgcgcggccccttccaat 19242369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 128; E-Value: 7e-66
Query Start/End: Original strand, 383 - 542
Target Start/End: Complemental strand, 9211530 - 9211371
Alignment:
Q  383 acatacttacctggatggggtcaatgggtgatcaagaaggcccatggcctaggaaggtgaccttcattgcactttggaggggtgccttcctaaggtctac 482  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||| | |||||||||||||||||||| || |||||   ||||||||||||    
T  9211530 acatacttacctggatggggtcaatgggtgatcaggaaggcccatggcctaggcaagtgaccttcattgcactttgaagaggtgctagcctaaggtctac 9211431  T
Q  483 ccaagtggtggagcctacatcataatttgttgctgtgggggcctgcgttcgcgcggcccc 542  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9211430 ccaagtggtggagcctacatcataatttgttgctgtgggggcctgcgttcgcgcggcccc 9211371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 383 - 542
Target Start/End: Original strand, 9369955 - 9370114
Alignment:
Q  383 acatacttacctggatggggtcaatgggtgatcaagaaggcccatggcctaggaaggtgaccttcattgcactttggaggggtgccttcctaaggtctac 482  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||| | |||||||||||||||||||| ||||||||   ||||||||||||    
T  9369955 acatacttacctggatggggtcaatgggtgatcaaaaaggcccatggcctaggcaagtgaccttcattgcactttgaaggggtgctagcctaaggtctac 9370054  T
Q  483 ccaagtggtggagcctacatcataatttgttgctgtgggggcctgcgttcgcgcggcccc 542  Q
    |||||||||||||||||||||||||| |||||  || ||||| |||||||||||||||||    
T  9370055 ccaagtggtggagcctacatcataatatgttgtggttggggcttgcgttcgcgcggcccc 9370114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 387 - 549
Target Start/End: Original strand, 12560131 - 12560294
Alignment:
Q  387 acttacctggatggggtcaatgggtgatcaagaaggcccatggcctaggaaggtgaccttcattgcactttggaggggtgccttcctaaggtcta-ccca 485  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| |||||||||||||||||||||   ||||||||||| ||||    
T  12560131 acttacctggatggggtcaatgggtgatcaagaaggcccatggcctaggcaagtgacctccattgcactttggaggggtgctagcctaaggtctacccca 12560230  T
Q  486 agtggtggagcctacatcataatttgttgctgtgggggcctgcgttcgcgcggccccctccaat 549  Q
    |||||||||||||||||||||||||||||| |||||||  ||||||||||| ||||| ||||||    
T  12560231 agtggtggagcctacatcataatttgttgccgtgggggtttgcgttcgcgcagccccttccaat 12560294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 369 - 549
Target Start/End: Original strand, 38783798 - 38783978
Alignment:
Q  369 tatggcattggattacatacttacctggatggggtcaatgggtgatcaagaaggcccatggcctaggaaggtgaccttcattgcactttggaggggtgcc 468  Q
    |||| |||||||  ||||||||||||||||||||||||||| |||||||||||| ||||||||||||  |||||||| |||||||||| |||||||||||    
T  38783798 tatgacattggacaacatacttacctggatggggtcaatggatgatcaagaaggtccatggcctaggttggtgacctccattgcacttaggaggggtgcc 38783897  T
Q  469 ttcctaaggtctacccaagtggtggagcctacatcataatttgttgctgtgggggcctgcgttcgcgcggccccctccaat 549  Q
    | | |||||| | | ||||| |   ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  38783898 tacttaaggtgttctcaagtagaacagcctacatcataatttgttgctgtgggggcctgcgttcgcgcggcccccttcaat 38783978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 383 - 544
Target Start/End: Original strand, 35181989 - 35182150
Alignment:
Q  383 acatacttacctggatggggtcaatgggtgatcaagaaggcccatggcctaggaaggtgaccttcattgcactttggaggggtgccttcctaaggtctac 482  Q
    ||||||||||||||||||||||||||| ||||||  ||||  ||||||||||   |||||||| |||||||||||||||||||||    ||||||| | |    
T  35181989 acatacttacctggatggggtcaatggatgatcattaaggttcatggcctagattggtgacctccattgcactttggaggggtgctagtctaaggtgttc 35182088  T
Q  483 ccaagtggtggagcctacatcataatttgttgctgtgggggcctgcgttcgcgcggccccct 544  Q
     ||||| |   |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35182089 tcaagtagaacagcctacatcataatttgttgctgtgggggcctgcgttcgcgcggccccct 35182150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 391 - 515
Target Start/End: Original strand, 12556892 - 12557016
Alignment:
Q  391 acctggatggggtcaatgggtgatcaagaaggcccatggcctaggaaggtgaccttcattgcactttggaggggtgccttcctaaggtctacccaagtgg 490  Q
    ||||||||||||||||| ||||||||||||||| ||| ||||| ||   |||||| |||||||||||||||||||||   |||||||||||| |||||||    
T  12556892 acctggatggggtcaataggtgatcaagaaggctcatagcctaagacaatgacctccattgcactttggaggggtgctggcctaaggtctactcaagtgg 12556991  T
Q  491 tggagcctacatcataatttgttgc 515  Q
    |||||||||||||||||||||||||    
T  12556992 tggagcctacatcataatttgttgc 12557016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 95; Significance: 3e-46; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 383 - 541
Target Start/End: Original strand, 9939644 - 9939802
Alignment:
Q  383 acatacttacctggatggggtcaatgggtgatcaagaaggcccatggcctaggaaggtgaccttcattgcactttggaggggtgccttcctaaggtctac 482  Q
    ||||||||||||||||||||||||||| |||||| ||||| | ||||||||||  |||||||| ||||||||||||||||||||||| |||||||| | |    
T  9939644 acatacttacctggatggggtcaatggatgatcatgaaggtctatggcctaggttggtgacctccattgcactttggaggggtgcctacctaaggtgttc 9939743  T
Q  483 ccaagtggtggagcctacatcataatttgttgctgtgggggcctgcgttcgcgcggccc 541  Q
     ||||| |   | ||||||||||||||||||||||||||||||||||||||||||||||    
T  9939744 tcaagtagaacaacctacatcataatttgttgctgtgggggcctgcgttcgcgcggccc 9939802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 385 - 549
Target Start/End: Original strand, 9937274 - 9937438
Alignment:
Q  385 atacttacctggatggggtcaatgggtgatcaagaaggcccatggcctaggaaggtgaccttcattgcactttggaggggtgccttcctaaggtctaccc 484  Q
    ||||||||||||||||||||||||| |||||| ||||| ||||||||||||  |||||||| |||||||||| ||||||||||||  ||||||| | | |    
T  9937274 atacttacctggatggggtcaatggatgatcatgaaggtccatggcctaggttggtgacctccattgcacttcggaggggtgcctatctaaggtgttctc 9937373  T
Q  485 aagtggtggagcctacatcataatttgttgctgtgggggcctgcgttcgcgcggccccctccaat 549  Q
    |||| |   ||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||    
T  9937374 aagtagaacagcctacatcatagtttgttgctgtgggggcctgcgttcgcgcggccccttccaat 9937438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 385 - 543
Target Start/End: Original strand, 9945694 - 9945855
Alignment:
Q  385 atacttacctggatggggtcaatgggtgatcaagaaggcccatggcctaggaaggtgaccttcattgcactttggaggggtgccttcctaaggtctaccc 484  Q
    |||||||||||||||||||||||||  ||||| ||||| | ||||||||||  |||||||| |||||||||||||||||||| || |||||||| | | |    
T  9945694 atacttacctggatggggtcaatggacgatcatgaaggtctatggcctaggttggtgacctccattgcactttggaggggtgtctgcctaaggtgttctc 9945793  T
Q  485 aagtgg---tggagcctacatcataatttgttgctgtgggggcctgcgttcgcgcggccccc 543  Q
    |||| |    | ||||||||| |||||||||||||||||||||||||||||||| |||||||    
T  9945794 aagtagaacagcagcctacattataatttgttgctgtgggggcctgcgttcgcgtggccccc 9945855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 410 - 524
Target Start/End: Complemental strand, 3428013 - 3427899
Alignment:
Q  410 gtgatcaagaaggcccatggcctaggaaggtgaccttcattgcactttggaggggtgccttcctaaggtctacccaagtggtggagcctacatcataatt 509  Q
    |||||||||||||||||| | |||||   ||||||| |||||||| ||||||||||||   | |||||||| ||||||||||||||  |||||| |||||    
T  3428013 gtgatcaagaaggcccatcgtctaggcgtgtgacctccattgcaccttggaggggtgctagcttaaggtctgcccaagtggtggagtttacatcgtaatt 3427914  T
Q  510 tgttgctgtgggggc 524  Q
    |||||| || |||||    
T  3427913 tgttgcagtaggggc 3427899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 88; Significance: 5e-42; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 383 - 542
Target Start/End: Original strand, 44089673 - 44089832
Alignment:
Q  383 acatacttacctggatggggtcaatgggtgatcaagaaggcccatggcctaggaaggtgaccttcattgcactttggaggggtgccttcctaaggtctac 482  Q
    |||||||||||||||||||||| ||| ||||||| |||||| |||||||||||  |||||||| |||||||||||||||||||||||  ||||||| | |    
T  44089673 acatacttacctggatggggtctatgagtgatcatgaaggctcatggcctaggttggtgacctccattgcactttggaggggtgcctatctaaggtgttc 44089772  T
Q  483 ccaagtggtggagcctacatcataatttgttgctgtgggggcctgcgttcgcgcggcccc 542  Q
     ||||| |   || ||||||||||||||||||||| ||||||||||||||||||||||||    
T  44089773 tcaagtagaacagtctacatcataatttgttgctgagggggcctgcgttcgcgcggcccc 44089832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 496 - 541
Target Start/End: Original strand, 38052155 - 38052200
Alignment:
Q  496 cctacatcataatttgttgctgtgggggcctgcgttcgcgcggccc 541  Q
    ||||||| ||||||||||| ||||| ||||||||| ||||||||||    
T  38052155 cctacattataatttgttgttgtggaggcctgcgtgcgcgcggccc 38052200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 66; Significance: 7e-29; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 458 - 547
Target Start/End: Complemental strand, 7959699 - 7959610
Alignment:
Q  458 ggaggggtgccttcctaaggtctacccaagtggtggagcctacatcataatttgttgctgtgggggcctgcgttcgcgcggccccctcca 547  Q
    |||||||||||||  ||||||||| |||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||    
T  7959699 ggaggggtgcctttttaaggtctatccaaatggtggagcctacatcataatttgttgctgtgggggtctgcgttcgcgcggccccttcca 7959610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 387 - 451
Target Start/End: Complemental strand, 43924105 - 43924042
Alignment:
Q  387 acttacctggatggggtcaatgggtgatcaagaaggcccatggcctaggaaggtgaccttcattg 451  Q
    ||||||||| ||||||||||||| ||||||||||||||||||||||||| | |||||||||||||    
T  43924105 acttacctgaatggggtcaatgg-tgatcaagaaggcccatggcctaggcaagtgaccttcattg 43924042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 473 - 513
Target Start/End: Complemental strand, 43924031 - 43923991
Alignment:
Q  473 taaggtctacccaagtggtggagcctacatcataatttgtt 513  Q
    |||||||||| ||||||||||||||||||| ||||||||||    
T  43924031 taaggtctactcaagtggtggagcctacattataatttgtt 43923991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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