View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7704_low_7 (Length: 537)
Name: NF7704_low_7
Description: NF7704
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7704_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 501; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 501; E-Value: 0
Query Start/End: Original strand, 8 - 520
Target Start/End: Complemental strand, 14111674 - 14111162
Alignment:
| Q |
8 |
tgagatgaacattagcaaatgctgaaacagcaaatagcaaagtaatgaaaaatgtagatatgaactttacttccattttcaccatgaaaagaaacaaatg |
107 |
Q |
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| T |
14111674 |
tgagatgaacattagcaaatgctgaaacagcaaatagcaaagtaatgaaaaatgtagatatgaactttacttccattttcaccatgaaaagaaacaaatg |
14111575 |
T |
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| Q |
108 |
aagaggattggatttggaaatgctaaggaagaaaaggcttttgtgtgttaatggacaaagctttgcttacttatattgtgcacttagagagaaacaattt |
207 |
Q |
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| T |
14111574 |
aagaggattggatttggaaatgctaaggaagaaaaggcatttgtgtgttaatggacaaagctttgcttacttatattgtgcacttagagagaaacaattt |
14111475 |
T |
|
| Q |
208 |
gaaattgattgtatcaaggttttgacttttccagccgagtttttctccttaattcatgccacgagcatggtgaggatatctaggccttaagatatttgag |
307 |
Q |
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| T |
14111474 |
gaaattgattgtatcaaggttttgacttttccagcggagtttttctccttaattcatgccacgagcatggtgaggatatctaggccttaagatatttgag |
14111375 |
T |
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| Q |
308 |
tcatacagttaggacttgggataagtgctttctaataagtagtaattagagttattagattgggtgaactagatctattaataatctaagaaaaacacat |
407 |
Q |
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| T |
14111374 |
tcatacagttaggacttgggataagtgctttctaataagtagtaattagagttattagattgggtgaactagatctattaataatctaagaaaaacacat |
14111275 |
T |
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| Q |
408 |
gttggttaaaaatctattagtataacatctacaattaagctgataacaatgtattagtgtaatactctatgaaacaattcaaatttagatcctctcattt |
507 |
Q |
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| T |
14111274 |
gttggttaaaaatctattagtataacatctacaattaagctgataacaatgtattagtgtaatgctctatgaaacaattcaaatttagatcctctcattt |
14111175 |
T |
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| Q |
508 |
cccttgttctctc |
520 |
Q |
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| T |
14111174 |
cccttgttctctc |
14111162 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 13 - 103
Target Start/End: Complemental strand, 14128616 - 14128526
Alignment:
| Q |
13 |
tgaacattagcaaatgctgaaacagcaaatagcaaagtaatgaaaaatgtagatatgaactttacttccattttcaccatgaaaagaaaca |
103 |
Q |
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||||| ||||||||||||||| ||||||| |||||||| ||||||| |||| ||||||| | ||| |||||||||||||||||||||||| |
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| T |
14128616 |
tgaaccttagcaaatgctgaagcagcaaagagcaaagtcatgaaaagtgtacatatgaatgtcactgccattttcaccatgaaaagaaaca |
14128526 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 13 - 107
Target Start/End: Complemental strand, 14124726 - 14124629
Alignment:
| Q |
13 |
tgaacattagcaaatgctgaaacagcaaatagcaaagtaatgaaaaatgtagatat---gaactttacttccattttcaccatgaaaagaaacaaatg |
107 |
Q |
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||||| ||||||||||||||| |||||||||||||||| ||||||| |||| |||| ||| | ||| |||||||||||||||| ||||||||||| |
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| T |
14124726 |
tgaaccttagcaaatgctgaagcagcaaatagcaaagtcatgaaaagtgtacatatgaagaatgtcactgccattttcaccatgaatagaaacaaatg |
14124629 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 236 - 299
Target Start/End: Complemental strand, 14128385 - 14128322
Alignment:
| Q |
236 |
ttccagccgagtttttctccttaattcatgccacgagcatggtgaggatatctaggccttaaga |
299 |
Q |
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| T |
14128385 |
ttccaaccgagtttttctccttaatttatgccatgagcatcttgagggaatctaggccttaaga |
14128322 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 228 - 268
Target Start/End: Complemental strand, 14124493 - 14124453
Alignment:
| Q |
228 |
tttgacttttccagccgagtttttctccttaattcatgcca |
268 |
Q |
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| T |
14124493 |
tttgacttttccaaccgagtttttctccttaatttatgcca |
14124453 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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