View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7704_low_9 (Length: 523)

Name: NF7704_low_9
Description: NF7704
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7704_low_9
NF7704_low_9
[»] chr6 (1 HSPs)
chr6 (10-523)||(18256096-18256615)


Alignment Details
Target: chr6 (Bit Score: 374; Significance: 0; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 10 - 523
Target Start/End: Complemental strand, 18256615 - 18256096
Alignment:
Q  10 gatggacatcaatgtattgatcagtttcatccaatatatcttccttgaataatgaaaacaactatgtattagcaatcttatttatagaataaactgtatt 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||    
T  18256615 gatggacatcaatgtattgatcagtttcatccaatatatcttccttgaataatgaaaacaactatgtattagcaatcttatttatagtataaattgtatt 18256516  T
Q  110 aacatgtgaaaatcgaattgctaattatttttataaggtgtctataatgataagaaagacaaacacagatgcgaacactaaacctgacactgacactaat 209  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  18256515 aacatgggaaaatcgaattgctaattatttttataaggtgtctataatgataagaaagataaacacagatgcgaacactaaacctgacactgacactaat 18256416  T
Q  210 aataatataagaa----aatggaattgaatgaatgcaacttgtgtcagacattgatatgtgtcggaccctaaannnnnnntcaacnnnnnnnnnnngtct 305  Q
    |||||||||||||    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||       |||||           ||||    
T  18256415 aataatataagaaaattaatggaattgaatgaatgcaacttgtgtcagacattgatatgtgtcggacactaaacaccccttcaacttttttttttggtct 18256316  T
Q  306 tcaaccatttatagcaatctatttacttaaatacgaatgttattgaattgaaaaccaaatttcaaccatcgctggtttgtcaaagtattaagaaactc-- 403  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||| ||||||||||      
T  18256315 tcaaccatttatagcaatctatttatttaaatacgaatgttattgaattgaaaaccaaatttcaaccatcgttggttagtcaaagtagtaagaaactcat 18256216  T
Q  404 atcttttcaataaaatttaagtttgagtcttgtgaatnnnnnnnntcggctcaaaaaggagttttaccctaaaaagagtatgatccacgcgactcgacac 503  Q
    ||||||||||||||| |||||||||||||||||||||        |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18256215 atcttttcaataaaacttaagtttgagtcttgtgaatagaaaaaatcggctcaaaaaggagttttaccctaaaaagagtatgatccacgcgactcgacac 18256116  T
Q  504 acattttacagagggtctga 523  Q
    ||||||||||||||||||||    
T  18256115 acattttacagagggtctga 18256096  T

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