View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7705_high_1 (Length: 423)
Name: NF7705_high_1
Description: NF7705
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7705_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 326; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 17 - 418
Target Start/End: Complemental strand, 28726315 - 28725918
Alignment:
| Q |
17 |
actatctacacatgaaacaaacatctgaggccgttgttcttcaaatcactttggttcaatactattttgcagataatatattttgcttctgttagaaaat |
116 |
Q |
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| T |
28726315 |
actatctacacatgaaacaaacatttgaggccgttgttcttcaaatcattttggttcaatactattttgcagataatatattttgcttctgttagaaaat |
28726216 |
T |
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| Q |
117 |
atgactttttatatgcactcgttacaatgatagaaaatgtgttg-aaacataatgctctaagtattcaattttagtttaggtggcctatcgtgaaattca |
215 |
Q |
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| T |
28726215 |
atgactttttatatgcactcgttacaatggtaggaaatgtgtttcaaacataatgctctaagtatacaattttagtt-----ggcctatcgtgaaattca |
28726121 |
T |
|
| Q |
216 |
tgataaagtatctaggaattcaaatatcgcgctgcctaagaatataaagaaaacactaagaatacacaccagaataattaaagatagaaacaccaaaaat |
315 |
Q |
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| T |
28726120 |
tgataaagtatctaggaattcaaatatcgcgctgcctaagaatataaagaaaacactaagaatacacaccagaataattaaagatagaaacaccaaaaat |
28726021 |
T |
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| Q |
316 |
aacaaatggacactaaaatagatcaaattttaacttgaaacaaagtatctattttcatgagcttatgacttctgataattgnnnnnnnttaaatcttatt |
415 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||| |
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| T |
28726020 |
aacaaatggacactaaaatagatcaaattttaacttgaaacaaagtatctattttcatgagcttatgacttttgataattgaaaaaaattaaatcttatt |
28725921 |
T |
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