View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7705_low_1 (Length: 556)
Name: NF7705_low_1
Description: NF7705
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7705_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 482; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 482; E-Value: 0
Query Start/End: Original strand, 16 - 529
Target Start/End: Original strand, 45230075 - 45230588
Alignment:
| Q |
16 |
ggtattgcctctgcaacgaaatttatgtcatcttccagaagtaatggtggtgaagaaaaatctatgttatttaatgggtgcccatgatcttccttggtct |
115 |
Q |
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| T |
45230075 |
ggtattgcctctgcaacgaaatttatgtcctcttccagaagtaatggtggtgaagaaaaatctatgttatttaatgggtgcacatgatcttccttggtct |
45230174 |
T |
|
| Q |
116 |
cagccaaaggcttatcagaagtgttattactaacagataaatgtactctggtagatttagcgtcagtttccgattcttctaaatttgaatgcctatcagt |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| |
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| T |
45230175 |
cagccaaaggcttatcagaagtgttattactaacagataaatgtcctctggtagatttagcgtcagtttcagattcttctaaatttgactgcctatcagt |
45230274 |
T |
|
| Q |
216 |
ggaagcggaagaggtagattccttgccatcatcactagatttggaaataaaattatctcctttaagagagtctaacctctgcaaagatgttgaagaagtt |
315 |
Q |
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| T |
45230275 |
ggaagcggaagaggtagattccttgccatcatcactagatttggcaataaaattatctcctttaagagagtctaacctctgcaaagatgttgaagaagtt |
45230374 |
T |
|
| Q |
316 |
ttgtgattcctcttgatatcagaaacggataaactattgagtttcttactattttgccttaaaatacgaggtgcaggcaaagcgttagaagcagaaggtg |
415 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
45230375 |
ttgtgattcctcttgatatcagaaacggataaactattgagtttcttactattttgccttaaaatacgaggtgcaggcaaagagttagaagcagaaggtg |
45230474 |
T |
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| Q |
416 |
aactaagaagttgagtccaatcaccatccgaaatggtaggaggagggttagatgatttgggtagtgcagtagtagttttagttttaaggggatcactgtg |
515 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45230475 |
aactaagaagttgagtccaatcaccatctgaaatggtaggaggagggttagatgatttgggtagtgcagtagtagttttagttttaaggggatcactgtg |
45230574 |
T |
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| Q |
516 |
cagttttccattat |
529 |
Q |
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|||||||||||||| |
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| T |
45230575 |
cagttttccattat |
45230588 |
T |
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