View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7705_low_3 (Length: 419)

Name: NF7705_low_3
Description: NF7705
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7705_low_3
NF7705_low_3
[»] chr7 (2 HSPs)
chr7 (37-402)||(18019939-18020304)
chr7 (174-255)||(18011210-18011291)
[»] chr4 (1 HSPs)
chr4 (4-43)||(48964650-48964689)
[»] chr1 (2 HSPs)
chr1 (91-134)||(30848829-30848872)
chr1 (92-134)||(6397844-6397886)
[»] chr6 (2 HSPs)
chr6 (91-129)||(9405127-9405165)
chr6 (38-76)||(9627286-9627324)
[»] chr3 (2 HSPs)
chr3 (37-73)||(8540980-8541016)
chr3 (37-73)||(8543031-8543067)


Alignment Details
Target: chr7 (Bit Score: 346; Significance: 0; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 37 - 402
Target Start/End: Complemental strand, 18020304 - 18019939
Alignment:
Q  37 tatatatagtactactacggttcagtttagaatattaccctcatcctaccaccacttgccttctttagtgtcttgcatatacgagccatactttaacatt 136  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18020304 tatatatagtactactacggttcagtttagaatattaccctcatcctaccaccacttgccttctttagtgtcttgcatatacgagccatactttaacatt 18020205  T
Q  137 actcattattatgattgacattgttgcatttcctctatttaggacgacgaggtttctgtgatatggctgaacaatcgtaaggtccgaagagctattcaca 236  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18020204 actcattattatgattgatattgttgcatttcctctatttaggacgacgaggtttctgtgatatggctgaacaatcgtaaggtccgaagagctattcaca 18020105  T
Q  237 ctgtgaaggtgaggattctaagtaaattacatatctattgtgaatattagttaagacagtgaatctttgtgaaaaaacaggagagtgtggtcaaggagtg 336  Q
    ||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||| | |||||||||||||||||||||||||||||||||||||||    
T  18020104 ctgtgaaggtgaggattctaagtaaattacacatctattgtggatattagttaagacactaaatctttgtgaaaaaacaggagagtgtggtcaaggagtg 18020005  T
Q  337 ggttttatgcacggggaaagttagatatgttcatgacagtgggagcatgattccataccacaaaaa 402  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18020004 ggttttatgcacggggaaagttagatatgttcatgacagtgggagcatgattccataccacaaaaa 18019939  T

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Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 174 - 255
Target Start/End: Complemental strand, 18011291 - 18011210
Alignment:
Q  174 tttaggacgacgaggtttctgtgatatggctgaacaatcgtaaggtccgaagagctattcacactgtgaaggtgaggattct 255  Q
    |||||||||| |||||| || || ||||||| ||||||| | | ||| |||||||||||||||||||| |||| ||||||||    
T  18011291 tttaggacgatgaggttgctatggtatggctaaacaatcctcaagtcagaagagctattcacactgtggaggtaaggattct 18011210  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 4 - 43
Target Start/End: Complemental strand, 48964689 - 48964650
Alignment:
Q  4 ctatcttggtcttagttatttgtaaaacacatctatatat 43  Q
    |||||||||||||||||||| |||||||||||||||||||    
T  48964689 ctatcttggtcttagttattggtaaaacacatctatatat 48964650  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 91 - 134
Target Start/End: Complemental strand, 30848872 - 30848829
Alignment:
Q  91 cttgccttctttagtgtcttgcatatacgagccatactttaaca 134  Q
    ||||||||||||||||||||| ||||| ||||||||||||||||    
T  30848872 cttgccttctttagtgtcttgaatatatgagccatactttaaca 30848829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 92 - 134
Target Start/End: Original strand, 6397844 - 6397886
Alignment:
Q  92 ttgccttctttagtgtcttgcatatacgagccatactttaaca 134  Q
    |||||||||||||||||||||||||| ||| ||||||| ||||    
T  6397844 ttgccttctttagtgtcttgcatatatgagtcatacttcaaca 6397886  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 91 - 129
Target Start/End: Complemental strand, 9405165 - 9405127
Alignment:
Q  91 cttgccttctttagtgtcttgcatatacgagccatactt 129  Q
    ||||||||||||||||||||| ||||| |||||||||||    
T  9405165 cttgccttctttagtgtcttgtatatatgagccatactt 9405127  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 38 - 76
Target Start/End: Original strand, 9627286 - 9627324
Alignment:
Q  38 atatatagtactactacggttcagtttagaatattaccc 76  Q
    |||||||||||||||||| ||||||||| ||||||||||    
T  9627286 atatatagtactactacgattcagtttacaatattaccc 9627324  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 37 - 73
Target Start/End: Complemental strand, 8541016 - 8540980
Alignment:
Q  37 tatatatagtactactacggttcagtttagaatatta 73  Q
    ||||||||||||||||||| ||||||||| |||||||    
T  8541016 tatatatagtactactacgattcagtttacaatatta 8540980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 37 - 73
Target Start/End: Complemental strand, 8543067 - 8543031
Alignment:
Q  37 tatatatagtactactacggttcagtttagaatatta 73  Q
    ||||||||||||||||||| ||||||||| |||||||    
T  8543067 tatatatagtactactacgattcagtttacaatatta 8543031  T

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