View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7705_low_4 (Length: 362)
Name: NF7705_low_4
Description: NF7705
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7705_low_4 |
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| [»] chr4 (4 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 306; Significance: 1e-172; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 1 - 362
Target Start/End: Original strand, 8695700 - 8696061
Alignment:
| Q |
1 |
acatagatagtaatggagttaatcttacattcatacatcaatattgcacttaataaataacgatgcaaaaccacccaaagaaaaaaccatgtatcatata |
100 |
Q |
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| T |
8695700 |
acatagatagtaatggagttaatcttacattcatacatcaatattgcacttaataaataacgttgcaaaaccacccaaagaaaaaaccatgtatcatata |
8695799 |
T |
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| Q |
101 |
catggacaaacaaagggtgacaaaaagtatgattaaagattttcatggcttcttggaagttctagctgcttcttgctgatacctagtagcataactatga |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||| ||| |
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| T |
8695800 |
catggacaaacaaagggtgacaaaaagtatgattaaagattttcatggcttcttggaagttctagctgcttcttgtcgataccttgtagcataactttga |
8695899 |
T |
|
| Q |
201 |
aacaaagcgagtgcgttactggtaacttctgcaacattcttcgccttaatcttaatcgtcgcaactcttttgctcatcctatgaccagggaatgattgta |
300 |
Q |
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|||||||| ||||||||||| |||||||||||||||||||||||||| | ||||||||||||||| || |||||||| |||||||||||||| ||||| | |
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| T |
8695900 |
aacaaagcaagtgcgttactagtaacttctgcaacattcttcgccttcaccttaatcgtcgcaaccctcttgctcattctatgaccagggaacgattgca |
8695999 |
T |
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| Q |
301 |
cacaactactagcgtcggttaaggcagtgctaacccatgtctcaacattacttatgtgccac |
362 |
Q |
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| T |
8696000 |
cacaactactagcgtcggttaaggcagtgctaacccatgtctcaacattacttatgtgccac |
8696061 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 53 - 362
Target Start/End: Complemental strand, 8693520 - 8693205
Alignment:
| Q |
53 |
ataaataacgatgcaaaaccacccaaagaaaaaaccatgtatcatatacatggacaaacaaagggtgacaaaaa---gtatgatt-aaagattttcatgg |
148 |
Q |
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| T |
8693520 |
ataaataacgatgtaaaaccacccaaagaaaaaac-atgtatcatatacatgaacaaacaaggggtgacaaaataaggtatgatttaaagtttttcatgg |
8693422 |
T |
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| Q |
149 |
cttcttggaagttctagctg---cttcttgctgatacctagtagcataactatgaaacaaagcgagtgcgttactggtaacttctgcaacattcttcgcc |
245 |
Q |
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| T |
8693421 |
cttcttcgaagttctagccgtggctgcttgtcgataccttgtagcataactttgaaacaaagcaagtgcattactagttacttctgcaacattcttcgcc |
8693322 |
T |
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| Q |
246 |
ttaatcttaatcgtcgcaactcttttgctcatcctatgaccagggaatgattgtacacaactactagcgtcggttaaggcagtgctaacccatgtctcaa |
345 |
Q |
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|||| ||||||||||||||| || |||||||| |||||||||||||| ||||| |||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
8693321 |
ttaaccttaatcgtcgcaacactattgctcattctatgaccagggaacgattgcacacaactactagcatcggttaaggcagtgctaacccatgtctcaa |
8693222 |
T |
|
| Q |
346 |
cattacttatgtgccac |
362 |
Q |
| |
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||||||||||||||||| |
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| T |
8693221 |
cattacttatgtgccac |
8693205 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 54 - 362
Target Start/End: Original strand, 8687182 - 8687492
Alignment:
| Q |
54 |
taaataacgatgcaaaaccacccaaagaaaaaaccatgtatcatatacatggacaaacaaagggtgacaaaaa---gtatgatta-aagattttcatggc |
149 |
Q |
| |
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|||||||| ||| ||||||||||||||||||||| |||| | |||||||||||||||||| |||||| |||| |||||||| ||| |||||||||| |
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| T |
8687182 |
taaataactatgtaaaaccacccaaagaaaaaac-atgtgt-atatacatggacaaacaaggggtgataaaataaggtatgatttcaagtttttcatggc |
8687279 |
T |
|
| Q |
150 |
ttcttggaagttctagctgcttcttgctgatacctagtagcataactatgaaacaaagcgagtgcgttactggtaacttctgcaacattcttcgccttaa |
249 |
Q |
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|||||| |||||||| ||| |||| ||||||||||||||||||| ||||||||||| ||||| ||||| || ||||||||||||||||||||||| | |
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| T |
8687280 |
ttcttgacggttctagccgctgcttgtcgatacctagtagcataactttgaaacaaagcaagtgcattactagttacttctgcaacattcttcgccttca |
8687379 |
T |
|
| Q |
250 |
tcttaatcgtcgcaactcttttgctcatcctatgaccagggaatgattgtacacaactactagcgtcggttaaggcagtgctaacccatgtctcaacatt |
349 |
Q |
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| T |
8687380 |
ccttaatcgtcgcaactcttttgctcattctatgaccagggaacgattgcacacaactactagcgtcggttaaggcagtgctaacccatgtctcaacatt |
8687479 |
T |
|
| Q |
350 |
acttatgtgccac |
362 |
Q |
| |
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||||||||||||| |
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| T |
8687480 |
acttatgtgccac |
8687492 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 168; E-Value: 6e-90
Query Start/End: Original strand, 1 - 362
Target Start/End: Complemental strand, 8675346 - 8674974
Alignment:
| Q |
1 |
acatagatagtaatggagttaatcttacattcata--catcaatattgcacttaataaataacgatgcaaaaccacccaaagaaaaaaccatgtat--ca |
96 |
Q |
| |
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||||| ||| ||||| |||||||| |||||||||| |||||||||| ||| ||||| ||| ||| |||||||||| |||||||||| |||||| || |
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| T |
8675346 |
acataaataataatgaagttaatcatacattcatatacatcaatattaaactagataaagaactatgtaaaaccacccgaagaaaaaac-atgtatatca |
8675248 |
T |
|
| Q |
97 |
tatacatggacaaacaaagggtgacaaaa--agt-atgatt--aaagattttcatggcttcttggaagttctagctg---cttcttgctgatacctagta |
188 |
Q |
| |
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||||||||||||||||| |||||| |||| ||| |||||| |||| |||||||||||||||| ||||||||| | || |||| ||||||| ||| |
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| T |
8675247 |
tatacatggacaaacaaggggtgataaaataagttatgatttaaaagtttttcatggcttcttgacagttctagccgtggctgcttgtcgataccttgta |
8675148 |
T |
|
| Q |
189 |
gcataactatgaaacaaagcgagtgcgttactggtaacttctgcaacattcttcgccttaatcttaatcgtcgcaactcttttgctcatcctatgaccag |
288 |
Q |
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|||||||| ||||||||||| ||||| ||||| || ||||||||||||||||||||||||| ||||||||||||||| || |||||||| |||||||||| |
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| T |
8675147 |
gcataactttgaaacaaagcaagtgcattactagttacttctgcaacattcttcgccttaaccttaatcgtcgcaaccctcttgctcattctatgaccag |
8675048 |
T |
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| Q |
289 |
ggaatgattgtacacaactactagcgtcggttaaggcagtgctaacccatgtctcaacattacttatgtgccac |
362 |
Q |
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|||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8675047 |
ggaacgattgcacacaactactagcgtcggttaaggcagtgctaacccatgtctcaacattacttatgtgccac |
8674974 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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