View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7706_high_1 (Length: 740)
Name: NF7706_high_1
Description: NF7706
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7706_high_1 |
 | |
|
| [»] scaffold0063 (1 HSPs) |
| | |
|
| [»] scaffold0655 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 433; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 433; E-Value: 0
Query Start/End: Original strand, 24 - 620
Target Start/End: Original strand, 26174950 - 26175549
Alignment:
| Q |
24 |
aatatagaaacaattcatgttccttcaactaaaaacttaagcgtaagcaagatataggataataacaattgtagtgtttaactttagttctctgtggcta |
123 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26174950 |
aatatagaaagaattcatgttccttcaactaaaaacttaagcttaagcaagatataggataataacaattgtagtgtttaactttagttctctgtggcta |
26175049 |
T |
|
| Q |
124 |
gattaactgttgaataaattctgaatgttgaggttgatataccttttttaggtggtggtgttgagtgcagcgtcacataacatgaattccttatgctttt |
223 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26175050 |
gattaactgttgaataaatcctgaatgttgaggttgatataccttttttaggtggtggtgttgagtgcagcgtcacataacatgaattccttatgctttt |
26175149 |
T |
|
| Q |
224 |
tacttggtttgagtataaaagaagaaagcggagctaagcatgttatgagtgcaaaatccaatacaaagagacatgtgtttcttttaattttattttaaag |
323 |
Q |
| |
|
||||||||||||||||||||||||||| ||| |||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
26175150 |
tacttggtttgagtataaaagaagaaatgggaactaagcatgtcatgagttcaaaatccaatacaaagagacatgtgtttcttttaattttatttttaag |
26175249 |
T |
|
| Q |
324 |
tttgattagtgcaattgttaaacattttgtttacacttcaaattttttctaattgcagatatggatagaaattgtatcgtctataatttatattttcatc |
423 |
Q |
| |
|
||| |||| |||||||||||||||||||||||||||||| ||||| |||||||||| || |||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
26175250 |
tttcattattgcaattgttaaacattttgtttacacttctaatttgttctaattgctgaaatggatagaaattgtatcgtttataatttatattttcatc |
26175349 |
T |
|
| Q |
424 |
ggtttggaatgcattgaattgcattannnnnnnaaataaatagatcaatttccatcggatttacctgcagatagtttttctcttgataaattttcatgca |
523 |
Q |
| |
|
| | |||||| ||||||||||||||| ||||||||| |||||||||| | | || |||||||||| ||||||||||||||||| |||| | | |
|
|
| T |
26175350 |
gttctggaatacattgaattgcattattttttaaaataaataaatcaatttcctccagtttgacctgcagattgtttttctcttgataaagtttcttacg |
26175449 |
T |
|
| Q |
524 |
gattttcc---tgcatagtttgctgcagatatacctgcaagtatgttcgcaggaaaaactctacatacagtgacttaccgaatatttcctgcttgacttg |
620 |
Q |
| |
|
|||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
26175450 |
gattttcctgatgcatagtttgctgcagaagtacctgcaagtatgttcgcaggaaaaactctacaaacagtgacttaccgaatatttcctgcttgacttg |
26175549 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 97; E-Value: 3e-47
Query Start/End: Original strand, 610 - 722
Target Start/End: Original strand, 26175596 - 26175707
Alignment:
| Q |
610 |
tgcttgacttgattatttactggtagaggaatcttgtactttatttcattgttgagaataaggtatagatctaccagaggatagttcgtttacacatttt |
709 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
26175596 |
tgcttgacttgattatttac-ggtagaggaatcttgtactttatttcattgttgagaataaggtacagatctaccagaggatagttcgtttacacatttt |
26175694 |
T |
|
| Q |
710 |
tattttgattctt |
722 |
Q |
| |
|
|||||||||||| |
|
|
| T |
26175695 |
gattttgattctt |
26175707 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 610 - 722
Target Start/End: Original strand, 26125543 - 26125654
Alignment:
| Q |
610 |
tgcttgacttgattatttactggtagaggaatcttgtactttatttcattgttgagaataaggtatagatctaccagaggatagttcgtttacacatttt |
709 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||| |
|
|
| T |
26125543 |
tgcttgacttgattatttactggtagaggaatgttgtactttatttcattgttgagaataaggtatagatctatcaga-tatagttcgtttacacatttt |
26125641 |
T |
|
| Q |
710 |
tattttgattctt |
722 |
Q |
| |
|
|||||||||||| |
|
|
| T |
26125642 |
gattttgattctt |
26125654 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 92; Significance: 3e-44; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 285 - 449
Target Start/End: Complemental strand, 28846544 - 28846376
Alignment:
| Q |
285 |
tacaaagagacatgtgtttcttttaattttattttaaagtttgattagtgcaattgttaaacatttt----gtttacacttcaaattttttctaattgca |
380 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||| | ||||||||| ||||||||||||||||| | ||||||||||| ||||| |||||||||| |
|
|
| T |
28846544 |
tacaaagagacatgagtttcttttaattttattttgatgtttgattaatgcaattgttaaacattcttttggtttacacttcgaatttgttctaattgct |
28846445 |
T |
|
| Q |
381 |
gatatggatagaaattgtatcgtctataatttatattttcatcggtttggaatgcattgaattgcatta |
449 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||| |||| |||| |||||| ||| ||||||| |
|
|
| T |
28846444 |
gaaatggatagaaattgtatcgtctataatttatatttttatcgttttgtaatgcaatgagatgcatta |
28846376 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 20 - 165
Target Start/End: Complemental strand, 28847106 - 28846963
Alignment:
| Q |
20 |
tgtcaatatagaaacaattcatgttccttcaactaaaaacttaagcgtaagcaagatataggataataacaattgtagtgtttaactttagttctctgtg |
119 |
Q |
| |
|
|||||||||||||||||||||| ||||||| ||||||| ||||||| ||||||| |||||||||||||| || | || |||||| |||||||||||||| |
|
|
| T |
28847106 |
tgtcaatatagaaacaattcatattccttcgactaaaa-cttaagcttaagcaaaatataggataataaaaactataatgttta-ctttagttctctgta |
28847009 |
T |
|
| Q |
120 |
gctagattaactgttgaataaattctgaatgttgaggttgatatac |
165 |
Q |
| |
|
||||||||| |||||||||||||||||| | || |||||||||| |
|
|
| T |
28847008 |
actagattaaatgttgaataaattctgaaagatgcagttgatatac |
28846963 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 221 - 349
Target Start/End: Original strand, 9806517 - 9806645
Alignment:
| Q |
221 |
ttttacttggtttgagtataaaagaagaaagcggagctaagcatgttatgagtgcaaaatccaatacaaagagacatgtgtttcttttaattttatttta |
320 |
Q |
| |
|
||||||||| |||| ||| |||||||||||| ||| || ||| ||| |||||||||||| |||| ||| | ||| ||||||||| ||||||||||| |
|
|
| T |
9806517 |
ttttacttgctttgcgtacaaaagaagaaaggggaactgagcttgtcccgagtgcaaaatcaaataaaaaaaaacaaatgtttctttcaattttattttg |
9806616 |
T |
|
| Q |
321 |
aagtttgattagtgcaattgttaaacatt |
349 |
Q |
| |
|
| |||||| |||| ||||||||||||||| |
|
|
| T |
9806617 |
atgtttgactagttcaattgttaaacatt |
9806645 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 65; Significance: 3e-28; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 22 - 150
Target Start/End: Complemental strand, 26130395 - 26130269
Alignment:
| Q |
22 |
tcaatatagaaacaattcatgttccttcaactaaaaacttaagcgtaagcaagatataggataataacaattgtagtgtttaactttagttctctgtggc |
121 |
Q |
| |
|
|||||||||||||||||||| ||||||| | | | ||||||||| ||||||||||||||||||||||||| ||| |||||| |||| |||||||||| | |
|
|
| T |
26130395 |
tcaatatagaaacaattcatattccttcga-tcacaacttaagcttaagcaagatataggataataacaactgtcgtgttt-acttaagttctctgtagg |
26130298 |
T |
|
| Q |
122 |
tagattaactgttgaataaattctgaatg |
150 |
Q |
| |
|
|||||||| ||||||||||||||| |||| |
|
|
| T |
26130297 |
tagattaattgttgaataaattcttaatg |
26130269 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0063 (Bit Score: 62; Significance: 2e-26; HSPs: 1)
Name: scaffold0063
Description:
Target: scaffold0063; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 302 - 441
Target Start/End: Complemental strand, 65261 - 65118
Alignment:
| Q |
302 |
ttcttttaattttattttaaagtttgattagtgcaattgttaaacatt---ttgttt-acacttcaaattttttctaattgcagatatggatagaaattg |
397 |
Q |
| |
|
||||||||||||||||| | |||||||||||| |||||||||||||| |||||| || |||| ||||| |||||||||| || ||||||||||| || |
|
|
| T |
65261 |
ttcttttaattttatttcgatgtttgattagtggaattgttaaacattcttttgttttacgcttctaatttgttctaattgctgaaatggatagaaaatg |
65162 |
T |
|
| Q |
398 |
tatcgtctataatttatattttcatcggtttggaatgcattgaa |
441 |
Q |
| |
|
|||| ||||||||||||||||| ||| ||||||||||| |||| |
|
|
| T |
65161 |
tatcttctataatttatatttttatcattttggaatgcaatgaa |
65118 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0655 (Bit Score: 60; Significance: 3e-25; HSPs: 1)
Name: scaffold0655
Description:
Target: scaffold0655; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 288 - 396
Target Start/End: Complemental strand, 1977 - 1865
Alignment:
| Q |
288 |
aaagagacatgtgtttcttttaattttattttaaagtttgattagtgcaattgttaaaca----ttttgtttacacttcaaattttttctaattgcagat |
383 |
Q |
| |
|
|||||||||||||||||||||||||||||||| | |||||||||||||||||||| |||| |||| |||||| ||| ||||| |||||||||| || |
|
|
| T |
1977 |
aaagagacatgtgtttcttttaattttattttgatgtttgattagtgcaattgttgaacattttttttttttacatttcgaatttgttctaattgctgaa |
1878 |
T |
|
| Q |
384 |
atggatagaaatt |
396 |
Q |
| |
|
||||||||||||| |
|
|
| T |
1877 |
atggatagaaatt |
1865 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 48; Significance: 5e-18; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 305 - 448
Target Start/End: Original strand, 19934836 - 19934980
Alignment:
| Q |
305 |
ttttaattttattttaaagtttgattagtgcaattgttaaaca---ttttg-tttacacttcaaattttttctaattgcagatatggatagaaattgtat |
400 |
Q |
| |
|
||||||||||||| | | |||||||||||||||||||| |||| ||||| |||||| ||| ||||| |||||||| | || |||||||||||||||| |
|
|
| T |
19934836 |
ttttaattttattatgatgtttgattagtgcaattgttgaacattcttttgttttacatttcgaatttgttctaatttctgaaatggatagaaattgta- |
19934934 |
T |
|
| Q |
401 |
cgtctataatttatattttcatcggtttggaatgcattgaattgcatt |
448 |
Q |
| |
|
||||||||||| ||||| || | ||||||||||| |||| |||||| |
|
|
| T |
19934935 |
--tctataatttaaatttttattgttttggaatgcaatgaaatgcatt |
19934980 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 353 - 576
Target Start/End: Original strand, 36319966 - 36320190
Alignment:
| Q |
353 |
tttacacttcaaattttttctaattgcagatatggatagaaattgtatcgtctataatttatattttcatcggtttggaatgcattgaattgcattannn |
452 |
Q |
| |
|
|||||||||| ||| |||||||||| | |||| ||||||| ||| ||||||||||||||||| |||| ||||||||||| |||| |||||| |
|
|
| T |
36319966 |
tttacacttctgattcgttctaattgcttaaatggtcagaaattatattttctataatttatatttttatcgttttggaatgcaatgaagagcattatta |
36320065 |
T |
|
| Q |
453 |
nnnn-aaataaatagatcaatttccatcggatttacctgcagatagtttttctcttgataaattttcatgcagattttcctgcatagtttgctgcagata |
551 |
Q |
| |
|
|||| ||| |||||||||| ||||||||||||||| | | || ||||||| |||||||| |||| |||||| ||||||||||| || | |
|
|
| T |
36320066 |
attttaaatcaatcaatcaatttcccgcggatttacctgcagttttctgtttacttgatatcctttcatgcggattctcctgcgtagtttgctgccgaaa |
36320165 |
T |
|
| Q |
552 |
tacctgcaagtatgttcgcaggaaa |
576 |
Q |
| |
|
||||||||||||| |||||| |||| |
|
|
| T |
36320166 |
tacctgcaagtatattcgcaagaaa |
36320190 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 356 - 441
Target Start/End: Original strand, 36326396 - 36326481
Alignment:
| Q |
356 |
acacttcaaattttttctaattgcagatatggatagaaattgtatcgtctataatttatattttcatcggtttggaatgcattgaa |
441 |
Q |
| |
|
||||||| |||| |||||||||| | |||| |||||||||||| ||||||||||||||||| |||| ||||||||||| |||| |
|
|
| T |
36326396 |
acacttccaattcgttctaattgcttaaatggttagaaattgtattttctataatttatatttttatcgttttggaatgcaatgaa |
36326481 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 392 - 446
Target Start/End: Complemental strand, 28752722 - 28752668
Alignment:
| Q |
392 |
aaattgtatcgtctataatttatattttcatcggtttggaatgcattgaattgca |
446 |
Q |
| |
|
|||||||||| | ||| ||||||||||| |||| |||||||||||||||| |||| |
|
|
| T |
28752722 |
aaattgtatcttttatgatttatatttttatcgttttggaatgcattgaagtgca |
28752668 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 298 - 418
Target Start/End: Complemental strand, 9438534 - 9438412
Alignment:
| Q |
298 |
gtgtttcttttaattttattttaaagtttgattagtgcaattgttaaaca-ttttgtt-tacacttcaaattttttctaattgcagatatggatagaaat |
395 |
Q |
| |
|
|||||||||||||||||||||| || |||| ||||||||||||||||| || |||| ||||| || ||||| ||||||| || ||| || || | |
|
|
| T |
9438534 |
gtgtttcttttaattttattttgttgtatgatgagtgcaattgttaaacacttatgttctacacatctaatttgttctaatcattgaaatgtttataatt |
9438435 |
T |
|
| Q |
396 |
tgtatcgtctataatttatattt |
418 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
9438434 |
tgtatcgtctataatttatattt |
9438412 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 104 - 165
Target Start/End: Original strand, 11815562 - 11815624
Alignment:
| Q |
104 |
actttagttctctgtggctagattaactgttgaat-aaattctgaatgttgaggttgatatac |
165 |
Q |
| |
|
||||||||||||||| ||||| ||| |||||| || |||||||||||| | |||||||||||| |
|
|
| T |
11815562 |
actttagttctctgtagctaggttatctgttggataaaattctgaatgattaggttgatatac |
11815624 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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