View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7706_high_14 (Length: 264)

Name: NF7706_high_14
Description: NF7706
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7706_high_14
NF7706_high_14
[»] chr2 (1 HSPs)
chr2 (1-247)||(27474368-27474614)
[»] chr3 (4 HSPs)
chr3 (1-228)||(5746724-5746951)
chr3 (1-228)||(5783683-5783910)
chr3 (20-228)||(19000117-19000325)
chr3 (168-228)||(18997578-18997638)
[»] chr7 (2 HSPs)
chr7 (20-229)||(14232153-14232362)
chr7 (20-228)||(14236927-14237135)
[»] chr6 (8 HSPs)
chr6 (20-229)||(22840645-22840854)
chr6 (20-228)||(22845418-22845626)
chr6 (86-228)||(34150996-34151136)
chr6 (86-228)||(34163612-34163752)
chr6 (1-97)||(34150879-34150975)
chr6 (1-97)||(34163495-34163591)
chr6 (118-229)||(15526553-15526664)
chr6 (10-97)||(15526680-15526769)
[»] chr1 (2 HSPs)
chr1 (20-229)||(34021977-34022182)
chr1 (6-76)||(3973758-3973828)
[»] chr4 (1 HSPs)
chr4 (9-161)||(5550641-5550795)
[»] chr8 (1 HSPs)
chr8 (9-219)||(33630494-33630706)


Alignment Details
Target: chr2 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 247
Target Start/End: Original strand, 27474368 - 27474614
Alignment:
Q  1 caatgagatagcttggcgcgcaagttaacgaattagaagcatttgcatttacatttaatttctaattgtaatttcacatggatctagttagttagaagag 100  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||| |||    
T  27474368 caatgagatagcttggcgcgcaagttaactaattagaagcatttgcatttacatttcatttctaattgtaatttcacatgcatctagttagttagaggag 27474467  T
Q  101 tgatgagctgacactaatgtgtatataactgaatgtaatgaaccttcacaagctaatgaaaatcatgtacaagttttctccatttggagctttttctctc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||  ||||| |||||||||||||||||||||||||||    
T  27474468 tgatgagctgacactaatgtgtatataactgaatgtaatgaacgttcacaagctaatgaaaatcagttacaaattttctccatttggagctttttctctc 27474567  T
Q  201 tcaaccatggcggtttattcttctctgatcttcacttggggtcatcc 247  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||    
T  27474568 tcaaccatggcagtttattcttctctgatcttcacttggggtcatcc 27474614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 156; Significance: 6e-83; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 5746951 - 5746724
Alignment:
Q  1 caatgagatagcttggcgcgcaagttaacgaattagaagcatttgcatttacatttaatttctaattgtaatttcacatggatctagttagttagaagag 100  Q
    |||||||||| |||||||| ||||||||| |||||||||||||||||||||||||  ||||||||||||| |||||  || |||||||||||||||| ||    
T  5746951 caatgagataacttggcgcacaagttaactaattagaagcatttgcatttacattccatttctaattgtattttcatctgcatctagttagttagaatag 5746852  T
Q  101 tgatgagctgacactaatgtgtatataactgaatgtaatgaaccttcacaagctaatgaaaatcatgtacaagttttctccatttggagctttttctctc 200  Q
    |||||||||| ||||||||||||||||||| |||| |||||||||||||||||||||||||||||  |||||||||||| ||||||||||||||||||||    
T  5746851 tgatgagctggcactaatgtgtatataactcaatgcaatgaaccttcacaagctaatgaaaatcagttacaagttttcttcatttggagctttttctctc 5746752  T
Q  201 tcaaccatggcggtttattcttctctga 228  Q
    |||||||||| |||| ||||||||||||    
T  5746751 tcaaccatggaggttcattcttctctga 5746724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 5783910 - 5783683
Alignment:
Q  1 caatgagatagcttggcgcgcaagttaacgaattagaagcatttgcatttacatttaatttctaattgtaatttcacatggatctagttagttagaagag 100  Q
    |||||||||| |||||||| ||||||||| |||||||||||||||||||||||||  ||||||||||||| |||||  || |||||||||||||||| ||    
T  5783910 caatgagataacttggcgcacaagttaactaattagaagcatttgcatttacattccatttctaattgtattttcatctgcatctagttagttagaatag 5783811  T
Q  101 tgatgagctgacactaatgtgtatataactgaatgtaatgaaccttcacaagctaatgaaaatcatgtacaagttttctccatttggagctttttctctc 200  Q
    |||||||||| ||||||||||||||||||| |||| |||||||||||||||||||||||||||||  |||||||||||| ||||||||||||||||||||    
T  5783810 tgatgagctggcactaatgtgtatataactcaatgcaatgaaccttcacaagctaatgaaaatcagttacaagttttcttcatttggagctttttctctc 5783711  T
Q  201 tcaaccatggcggtttattcttctctga 228  Q
    |||||||||| |||| ||||||||||||    
T  5783710 tcaaccatggaggttcattcttctctga 5783683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 20 - 228
Target Start/End: Complemental strand, 19000325 - 19000117
Alignment:
Q  20 gcaagttaacgaattagaagcatttgcatttacatttaatttctaattgtaatttcacatggatctagttagttagaagagtgatgagctgacactaatg 119  Q
    |||||||||| ||||||||| |||||||||| ||||| |||||||| ||||||||||  || |||||||||||||||| |||||||||||| ||||||||    
T  19000325 gcaagttaactaattagaagtatttgcatttgcatttcatttctaactgtaatttcatttgcatctagttagttagaatagtgatgagctggcactaatg 19000226  T
Q  120 tgtatataactgaatgtaatgaaccttcacaagctaatgaaaatcatgtacaagttttctccatttggagctttttctctctcaaccatggcggtttatt 219  Q
    ||||||||||||||||||||||||||| |||||  |||||||||||  |||||||||||| ||||||||||||||||||||| |||||||| |||| |||    
T  19000225 tgtatataactgaatgtaatgaacctttacaagtaaatgaaaatcagttacaagttttcttcatttggagctttttctctcttaaccatggtggttcatt 19000126  T
Q  220 cttctctga 228  Q
    |||||||||    
T  19000125 cttctctga 19000117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 168 - 228
Target Start/End: Complemental strand, 18997638 - 18997578
Alignment:
Q  168 tacaagttttctccatttggagctttttctctctcaaccatggcggtttattcttctctga 228  Q
    |||||||||||| ||||||||||||||||||||| |||||||| |||| ||||||||||||    
T  18997638 tacaagttttcttcatttggagctttttctctcttaaccatggtggttcattcttctctga 18997578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 138; Significance: 3e-72; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 20 - 229
Target Start/End: Original strand, 14232153 - 14232362
Alignment:
Q  20 gcaagttaacgaattagaagcatttgcatttacatttaatttctaattgtaatttcacatggatctagttagttagaagagtgatgagctgacactaatg 119  Q
    |||||||||| ||||||||| |||||||||| ||||| |||||||| ||||||||||  || |||||||||||||||| |||||||||||| ||||||||    
T  14232153 gcaagttaactaattagaagtatttgcatttgcatttcatttctaactgtaatttcatctgcatctagttagttagaatagtgatgagctggcactaatg 14232252  T
Q  120 tgtatataactgaatgtaatgaaccttcacaagctaatgaaaatcatgtacaagttttctccatttggagctttttctctctcaaccatggcggtttatt 219  Q
    ||||||||||||||||||||||||||| |||||| ||||||||| |  ||||||||||||| ||||||||||||||||||||||||||||| |||| |||    
T  14232253 tgtatataactgaatgtaatgaacctttacaagccaatgaaaattagttacaagttttctctatttggagctttttctctctcaaccatggtggttcatt 14232352  T
Q  220 cttctctgat 229  Q
    ||||||||||    
T  14232353 cttctctgat 14232362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 20 - 228
Target Start/End: Original strand, 14236927 - 14237135
Alignment:
Q  20 gcaagttaacgaattagaagcatttgcatttacatttaatttctaattgtaatttcacatggatctagttagttagaagagtgatgagctgacactaatg 119  Q
    |||||||||| ||||||||| |||||||||| ||||| |||||||| ||||||||||  || |||||||||||||||| |||||||||||| ||||||||    
T  14236927 gcaagttaactaattagaagtatttgcatttgcatttcatttctaactgtaatttcatctgcatctagttagttagaatagtgatgagctggcactaatg 14237026  T
Q  120 tgtatataactgaatgtaatgaaccttcacaagctaatgaaaatcatgtacaagttttctccatttggagctttttctctctcaaccatggcggtttatt 219  Q
    ||||||||||||||||||||||||||| |||||| ||||||||| |  ||||||||||||| ||||||||||||||||||||||||||||| |||| |||    
T  14237027 tgtatataactgaatgtaatgaacctttacaagccaatgaaaattagttacaagttttctctatttggagctttttctctctcaaccatggtggttcatt 14237126  T
Q  220 cttctctga 228  Q
    |||||||||    
T  14237127 cttctctga 14237135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 134; Significance: 8e-70; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 134; E-Value: 8e-70
Query Start/End: Original strand, 20 - 229
Target Start/End: Original strand, 22840645 - 22840854
Alignment:
Q  20 gcaagttaacgaattagaagcatttgcatttacatttaatttctaattgtaatttcacatggatctagttagttagaagagtgatgagctgacactaatg 119  Q
    |||||||||| ||||||||| |||||||||| ||||| |||||||| ||||||||||  || |||||||||||||||| |||||||||||| ||||||||    
T  22840645 gcaagttaactaattagaagtatttgcatttgcatttcatttctaactgtaatttcatttgcatctagttagttagaatagtgatgagctggcactaatg 22840744  T
Q  120 tgtatataactgaatgtaatgaaccttcacaagctaatgaaaatcatgtacaagttttctccatttggagctttttctctctcaaccatggcggtttatt 219  Q
    ||||||||||||||||||||||||||| |||||  |||||||||||  |||||||||||| |||||| |||||||||||||| |||||||| ||||||||    
T  22840745 tgtatataactgaatgtaatgaacctttacaagtcaatgaaaatcagttacaagttttcttcatttgaagctttttctctcttaaccatggtggtttatt 22840844  T
Q  220 cttctctgat 229  Q
    ||||||||||    
T  22840845 cttctctgat 22840854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 20 - 228
Target Start/End: Original strand, 22845418 - 22845626
Alignment:
Q  20 gcaagttaacgaattagaagcatttgcatttacatttaatttctaattgtaatttcacatggatctagttagttagaagagtgatgagctgacactaatg 119  Q
    |||||||||| ||||||||| |||||||||| ||||| |||||||| ||||||||||  || |||||||||||||||| |||||||||||| ||||||||    
T  22845418 gcaagttaactaattagaagtatttgcatttgcatttcatttctaactgtaatttcatttgcatctagttagttagaatagtgatgagctggcactaatg 22845517  T
Q  120 tgtatataactgaatgtaatgaaccttcacaagctaatgaaaatcatgtacaagttttctccatttggagctttttctctctcaaccatggcggtttatt 219  Q
    ||||||||||||||||||||||||||| |||||  |||||||||||  |||||||||||| |||||| |||||||||||||| |||||||| ||||||||    
T  22845518 tgtatataactgaatgtaatgaacctttacaagtcaatgaaaatcagttacaagttttcttcatttgaagctttttctctcttaaccatggtggtttatt 22845617  T
Q  220 cttctctga 228  Q
    |||||||||    
T  22845618 cttctctga 22845626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 86 - 228
Target Start/End: Original strand, 34150996 - 34151136
Alignment:
Q  86 agttagttagaagagtgatgagctgacactaatgtgtatataactgaatgtaatgaaccttcacaagctaatgaaaatcatgtacaagttttctccattt 185  Q
    ||||||||||||  |||||||| || ||||||||||||||||||| |||  |||||||||||||||||||||||||||||  ||||||||||||||||||    
T  34150996 agttagttagaatggtgatgagttggcactaatgtgtatataactcaat--aatgaaccttcacaagctaatgaaaatcagttacaagttttctccattt 34151093  T
Q  186 ggagctttttctctctcaaccatggcggtttattcttctctga 228  Q
    |||||||||||| |||||||||||| |||| ||||||||||||    
T  34151094 ggagctttttctttctcaaccatggaggttcattcttctctga 34151136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 86 - 228
Target Start/End: Original strand, 34163612 - 34163752
Alignment:
Q  86 agttagttagaagagtgatgagctgacactaatgtgtatataactgaatgtaatgaaccttcacaagctaatgaaaatcatgtacaagttttctccattt 185  Q
    ||||||||||||  |||||||| || ||||||||||||||||||| |||  |||||||||||||||||||||||||||||  ||||||||||||||||||    
T  34163612 agttagttagaatggtgatgagttggcactaatgtgtatataactcaat--aatgaaccttcacaagctaatgaaaatcagttacaagttttctccattt 34163709  T
Q  186 ggagctttttctctctcaaccatggcggtttattcttctctga 228  Q
    |||||||||||| |||||||||||| |||| ||||||||||||    
T  34163710 ggagctttttctttctcaaccatggaggttcattcttctctga 34163752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 34150879 - 34150975
Alignment:
Q  1 caatgagatagcttggcgcgcaagttaacgaattagaagcatttgcatttacatttaatttctaattgtaatttcacatggatctagttagttagaa 97  Q
    |||||||||| |||||||||||||||||| ||||||||| |||||||||||||||| |||||||||||||||||||  || ||||||||||||||||    
T  34150879 caatgagataacttggcgcgcaagttaactaattagaagtatttgcatttacatttcatttctaattgtaatttcatctgcatctagttagttagaa 34150975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 34163495 - 34163591
Alignment:
Q  1 caatgagatagcttggcgcgcaagttaacgaattagaagcatttgcatttacatttaatttctaattgtaatttcacatggatctagttagttagaa 97  Q
    |||||||||| |||||||||||||||||| ||||||||| |||||||||||||||| |||||||||||||||||||  || ||||||||||||||||    
T  34163495 caatgagataacttggcgcgcaagttaactaattagaagtatttgcatttacatttcatttctaattgtaatttcatctgcatctagttagttagaa 34163591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 118 - 229
Target Start/End: Complemental strand, 15526664 - 15526553
Alignment:
Q  118 tgtgtatataactgaatgtaatgaaccttcacaagctaatgaaaatcatgtacaagttttctcca-tttggagctttttctctctcaaccatggcggttt 216  Q
    ||||||| ||||||  |||||||| | |||||||||||||||||| ||  ||||| ||||||||| ||||||||||||  ||| ||| |||||| |||||    
T  15526664 tgtgtatgtaactgtttgtaatgagcattcacaagctaatgaaaa-cagttacaacttttctccactttggagcttttcttctttcatccatggtggttt 15526566  T
Q  217 attcttctctgat 229  Q
    |||||||||||||    
T  15526565 attcttctctgat 15526553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 10 - 97
Target Start/End: Complemental strand, 15526769 - 15526680
Alignment:
Q  10 agcttggcgcgcaagttaacgaattagaagcatttgcatttacatttaatttctaattgtaatttcaca--tggatctagttagttagaa 97  Q
    |||||||||| ||||||||| | ||||| | ||||||||||||||||   || || |||||||||||||  |  ||||||||||||||||    
T  15526769 agcttggcgcacaagttaactagttagatgtatttgcatttacatttccattttatttgtaatttcacatttacatctagttagttagaa 15526680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 105; Significance: 2e-52; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 20 - 229
Target Start/End: Complemental strand, 34022182 - 34021977
Alignment:
Q  20 gcaagttaacgaattagaagcatttgcatttacatttaatttctaattgtaatttcacatggatctagttagttagaagagtgatgagctgacactaatg 119  Q
    |||| ||||| |||||||||||||||||| ||||||| |||||||||| ||||||||  |  ||||| |||||||| | |||||||||||| |||||||     
T  34022182 gcaaattaactaattagaagcatttgcatctacatttcatttctaattataatttcatctccatctaattagttaggatagtgatgagctggcactaat- 34022084  T
Q  120 tgtatataactgaatgtaatgaaccttcacaagctaatgaaaatcatgtacaagttttctccatttggagctttttctctctcaaccatggcggtttatt 219  Q
       |||||||| |||||||||||||||||||| |||||||||||||  ||||| |||||||||||| || ||||||||||||||||||||| |||| |||    
T  34022083 ---atataactcaatgtaatgaaccttcacaaactaatgaaaatcagttacaaattttctccatttagaactttttctctctcaaccatggaggttcatt 34021987  T
Q  220 cttctctgat 229  Q
    ||||||||||    
T  34021986 cttctctgat 34021977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 6 - 76
Target Start/End: Original strand, 3973758 - 3973828
Alignment:
Q  6 agatagcttggcgcgcaagttaacgaattagaagcatttgcatttac-atttaatttctaattgtaatttca 76  Q
    ||||| |||||| ||||||||||| ||||||| ||||||| |||||| |||| ||||| |||||||||||||    
T  3973758 agataacttggcacgcaagttaactaattagatgcatttgtatttacaatttcatttc-aattgtaatttca 3973828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 9 - 161
Target Start/End: Original strand, 5550641 - 5550795
Alignment:
Q  9 tagcttggcgcgcaagttaacgaattagaagcatttgcatttacatttaatttctaattgtaatttcacatggatctagttagttagaagagt---gatg 105  Q
    ||||||||||||||||||||| ||||||| |||||||||||||   |||||||| | |||||||| ||  |  |||||||||||||||  |||    |||    
T  5550641 tagcttggcgcgcaagttaactaattagatgcatttgcatttatgattaatttc-acttgtaattacatttacatctagttagttagagtagttactatg 5550739  T
Q  106 agctgacactaatgtgtatataactgaatgtaatgaaccttcacaagctaatgaaa 161  Q
    ||||| ||| |||||||||||||||   ||| ||||||  |||||| |||||||||    
T  5550740 agctggcaccaatgtgtatataactccttgtcatgaactatcacaatctaatgaaa 5550795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 9 - 219
Target Start/End: Complemental strand, 33630706 - 33630494
Alignment:
Q  9 tagcttggcgcgcaagttaacgaattagaagcatttgcatttacatttaatttctaattgtaatttcacatggatctagttagttagaagagt---gatg 105  Q
    |||||||||| |||||||||| ||||||| ||||||||||||||  |||||||| | |||||||| ||  |  |||||||||||||||  |||    |||    
T  33630706 tagcttggcgtgcaagttaactaattagatgcatttgcatttacgattaatttc-acttgtaattacatttacatctagttagttagagtagttactatg 33630608  T
Q  106 agctgacactaatgtgtatataactgaatgtaatgaaccttcacaagctaatgaaaatcatgtacaagttttctcc-atttggagctttttctctc-tca 203  Q
    |||||  || |||||||||||||||   ||||||||||  ||||||  ||||  ||| ||  |  ||  ||||||| ||||||||||||||||||| |||    
T  33630607 agctggaaccaatgtgtatataactacttgtaatgaactatcacaatgtaat--aaaacacttttaatctttctccaatttggagctttttctctcttca 33630510  T
Q  204 accatggcggtttatt 219  Q
     |||||||||||||||    
T  33630509 tccatggcggtttatt 33630494  T

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