View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7706_high_15 (Length: 251)
Name: NF7706_high_15
Description: NF7706
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7706_high_15 |
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| [»] scaffold0421 (1 HSPs) |
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Alignment Details
Target: scaffold0421 (Bit Score: 178; Significance: 4e-96; HSPs: 1)
Name: scaffold0421
Description:
Target: scaffold0421; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 4 - 237
Target Start/End: Original strand, 13420 - 13653
Alignment:
| Q |
4 |
tgagaaacgcggtctctgctctctccatctcttcgtcttcgccatctcctcccaaacttcgatctttgaccgccatctcctcctagtctccgatctccga |
103 |
Q |
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| T |
13420 |
tgagaaacgcggtctctgctctctccatctctctgtctttgccatctcctcccaatctccggtctttgaccgccatctcctcatagtctccgatctccga |
13519 |
T |
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| Q |
104 |
ccgccatctcttcccagtctccgacggccgcattctctcaaacggtctcttctccttctgcaattcaacattgactattgtctccgtcgccgaatcaaac |
203 |
Q |
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| T |
13520 |
ccgccatctcttcccagtctccgacggctgcattctctctaacggtctcttctccttctgcgattcaacatcgactgctgtctccgtcgccgaatcaaac |
13619 |
T |
|
| Q |
204 |
cgttgaaggtgatgtatatcttaaatcttgtatt |
237 |
Q |
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| T |
13620 |
cgttgaaggtgatgtatattttaaatcttgtatt |
13653 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 74 - 115
Target Start/End: Complemental strand, 39034016 - 39033975
Alignment:
| Q |
74 |
cgccatctcctcctagtctccgatctccgaccgccatctctt |
115 |
Q |
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| T |
39034016 |
cgccatctcctcccagtctccgatctccgaccgccatctctt |
39033975 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 82
Target Start/End: Complemental strand, 39034043 - 39033977
Alignment:
| Q |
16 |
tctctgctctctccatctcttcgtcttcgccatctcctcccaaacttcgatctttgaccgccatctc |
82 |
Q |
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| T |
39034043 |
tctcttctctctccatctctctgtcgtcgccatctcctcccagtctccgatctccgaccgccatctc |
39033977 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.00000000009; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 8 - 58
Target Start/End: Complemental strand, 47345407 - 47345357
Alignment:
| Q |
8 |
aaacgcggtctctgctctctccatctcttcgtcttcgccatctcctcccaa |
58 |
Q |
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| T |
47345407 |
aaacgcgatctctgctctctccatctctctgtcatcgccatctcctcccaa |
47345357 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 105 - 158
Target Start/End: Complemental strand, 47345372 - 47345319
Alignment:
| Q |
105 |
cgccatctcttcccagtctccgacggccgcattctctcaaacggtctcttctcc |
158 |
Q |
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| T |
47345372 |
cgccatctcctcccaatctccgaccgccgcattctctctaacgatctcttctcc |
47345319 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 107 - 156
Target Start/End: Original strand, 3798187 - 3798236
Alignment:
| Q |
107 |
ccatctcttcccagtctccgacggccgcattctctcaaacggtctcttct |
156 |
Q |
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| T |
3798187 |
ccatctcctctcagtctccgaccgccgcattctctctaacgatctcttct |
3798236 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 74 - 115
Target Start/End: Complemental strand, 34165028 - 34164988
Alignment:
| Q |
74 |
cgccatctcctcctagtctccgatctccgaccgccatctctt |
115 |
Q |
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| T |
34165028 |
cgccatctcctcc-agtctccgatctccgaccgtcatctctt |
34164988 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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