View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7706_high_18 (Length: 239)
Name: NF7706_high_18
Description: NF7706
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7706_high_18 |
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Alignment Details
Target: chr3 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 26415016 - 26415239
Alignment:
| Q |
1 |
ttcttctttatttatttcatgacatgttgacttgcaactttgtgaacatttcaataaattttctaaatttcccatcttcgttttctttccnnnnnnnatc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
26415016 |
ttcttctttatttatttcatgacatgttgacttgcaactttgtgaacatttcaataaattttctaaatttcccatcttcgttttctttcctttttttatc |
26415115 |
T |
|
| Q |
101 |
aaagatggtatgacttgaggtttatcacaatcgttaagtatttggattttcctcttccttaacatttactcggcatcgattagtttcatactttcggcta |
200 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
26415116 |
aaagatggtatgacttgaggtttatcacaatcgttaagtatttggattttcctcttccttaacatttactcggcatcgattagtttcatactttcagcta |
26415215 |
T |
|
| Q |
201 |
cctcatcaattttttcttctttat |
224 |
Q |
| |
|
|||||||||||||||||||||||| |
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|
| T |
26415216 |
cctcatcaattttttcttctttat |
26415239 |
T |
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