View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7706_high_3 (Length: 527)
Name: NF7706_high_3
Description: NF7706
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7706_high_3 |
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| [»] scaffold0004 (1 HSPs) |
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| [»] scaffold1543 (1 HSPs) |
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| [»] scaffold0421 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 264; Significance: 1e-147; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 213 - 511
Target Start/End: Original strand, 21625673 - 21625974
Alignment:
| Q |
213 |
ttaattacttaatgttcctagacatagcttagttaaagaatttgtataactataattctagttccacacactaatccaccctaattctaatttcaacaa- |
311 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21625673 |
ttaattacttaatgttcctaaacatagcttagttaaagaatttgtataactataattctagttccacacactaatccaccctaattctaatttcaacaac |
21625772 |
T |
|
| Q |
312 |
--tttccagaaattatcattcatgaaaatcacttaatatctcatactaatcactgtaccaacgtgaaggtatcaattctaattatttaaattcaagtcta |
409 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||| || ||||||||||||||||||||||||||||||||||| |
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| T |
21625773 |
aatttcaagaaattatcattcatgaaaatcacttaatatctcatactaatcactttaccaatgtaaaggtatcaattctaattatttaaattcaagtcta |
21625872 |
T |
|
| Q |
410 |
ggagaggaaacccacctcaaagaacaacttcctcttgatgcagtcttgacccaaaactctgtctccaacaaggactcttgtcctgcatcaatccttcaat |
509 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
21625873 |
ggagaggaaacccacctcaaagaacaacttcctcttgatgcagtcttgacccaaaactctgtctccaacaagcactcttgtcctgcatcaatccttcaat |
21625972 |
T |
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| Q |
510 |
tt |
511 |
Q |
| |
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|| |
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| T |
21625973 |
tt |
21625974 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 140 - 219
Target Start/End: Original strand, 21625392 - 21625471
Alignment:
| Q |
140 |
gtaaagaaaatacttttcttttgctctgtctataaactggcctagttcttaagtatcacaagaagtctatgacttaatta |
219 |
Q |
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|||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21625392 |
gtaaagaaaatacttttctttttctctgtctataaattggcctagttcttaagtatcacaagaagtctatgacttaatta |
21625471 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 71 - 130
Target Start/End: Original strand, 47345492 - 47345551
Alignment:
| Q |
71 |
atatttccatgccatgtcattggtggtagaaaagggtgtaccaaaagagtggtacatgaa |
130 |
Q |
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||||||||||| |||||||| ||| || ||||||||||||||||||||| |||||||| |
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| T |
47345492 |
atatttccatgtcatgtcatcagtgctataaaagggtgtaccaaaagagtaatacatgaa |
47345551 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0004 (Bit Score: 124; Significance: 1e-63; HSPs: 1)
Name: scaffold0004
Description:
Target: scaffold0004; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 213 - 508
Target Start/End: Complemental strand, 336571 - 336284
Alignment:
| Q |
213 |
ttaattacttaatgttcctagacatagcttagttaaagaatttgtataactataattctagttccacacactaatccaccctaattctaatttcaacaat |
312 |
Q |
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||||||||||||| ||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
336571 |
ttaattacttaatattcctaggcataacttagttaaagaatttgtataactataattctagttccacacactaatccatcctaattctaatttcaacaa- |
336473 |
T |
|
| Q |
313 |
ttccagaaattatcattcatgaaaatcacttaatatctcatactaatcactgtacc---------aacgtgaaggtatcaattctaattatttaaattca |
403 |
Q |
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|| |||||||||||||||| | ||||||||||||| ||||| || | ||| ||||||| ||| || |||| |||| |
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| T |
336472 |
-------------ca---atgaaaatcacttaatttatcatactaatcacagtacccattaatccaatataaagatatcaataataactagttaagttca |
336389 |
T |
|
| Q |
404 |
agtctaggagaggaaacccacctcaaagaacaacttcctcttgatgcagtcttgacccaaaactctgtctccaacaaggactcttgtcctgcatcaatcc |
503 |
Q |
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|| |||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
336388 |
agcctaggagaggaaacccacctcaaatgacaacttctggttgatgcagtcttgacccaaaactctgtctccaacaaggactcttgtcctgcatcaatcc |
336289 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1543 (Bit Score: 64; Significance: 1e-27; HSPs: 1)
Name: scaffold1543
Description:
Target: scaffold1543; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 140 - 219
Target Start/End: Original strand, 1558 - 1637
Alignment:
| Q |
140 |
gtaaagaaaatacttttcttttgctctgtctataaactggcctagttcttaagtatcacaagaagtctatgacttaatta |
219 |
Q |
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|||||||||||||||||||||| |||||||||||||||| |||| |||||||||||||||| |||||||||||||||||| |
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| T |
1558 |
gtaaagaaaatacttttctttttctctgtctataaactgacctatttcttaagtatcacaataagtctatgacttaatta |
1637 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0421 (Bit Score: 63; Significance: 4e-27; HSPs: 1)
Name: scaffold0421
Description:
Target: scaffold0421; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 71 - 137
Target Start/End: Complemental strand, 13336 - 13270
Alignment:
| Q |
71 |
atatttccatgccatgtcattggtggtagaaaagggtgtaccaaaagagtggtacatgaatcttttt |
137 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13336 |
atatttccatgccatgtcatcggtggtagaaaagggtgtaccaaaagagtggtacatgaatcttttt |
13270 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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