View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7706_high_6 (Length: 397)
Name: NF7706_high_6
Description: NF7706
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7706_high_6 |
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Alignment Details
Target: chr3 (Bit Score: 347; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 1 - 379
Target Start/End: Original strand, 47296000 - 47296377
Alignment:
| Q |
1 |
ttgggacgggaaaagggttctatcaccctaaatcaaacatgctagtagttatgtaagccatatttgttaatgttattagaagtcggttatgatcaacatt |
100 |
Q |
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| T |
47296000 |
ttgggacgggaaaagggttctatcaccctaaatcaaatatgctagtagttatgtaagccatatttgttaatgttattagaagtcggttatgatcaacatt |
47296099 |
T |
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| Q |
101 |
actcggttaaataaattgcaaaacactttattttcactctttctctaaactaaatcaaacctccacgataatactatcatgactagagcgagtaattgat |
200 |
Q |
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| T |
47296100 |
actcggataaataaattgcaaaacactttattttcactctttctctaaactaaatcaaacctctacgataatactatcatgactagagcgagtaattgat |
47296199 |
T |
|
| Q |
201 |
gtgtagtgcgtataaatgttgtaaatacggagatattcaattcgaattctactcattgaagaaaaataaactacaatgatgcgcaaatcataaatacaaa |
300 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
47296200 |
gtgtagtgcgtgtaaatgttgtaaatacggagatattcaattcgaattctactcattgaagaaaaataaactacaatgatgcacaaatcataaatacaaa |
47296299 |
T |
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| Q |
301 |
attaaatctaaagaaacaattgttctaatattttgcaatacatcaaagtgagtagtattattgtttgactcacaaatct |
379 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
47296300 |
attaaatctaaagaaacaattgttctaata-tttgcaatacatcaaagtgagtagtattattgtttgattcacaaatct |
47296377 |
T |
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