View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7706_high_8 (Length: 366)
Name: NF7706_high_8
Description: NF7706
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7706_high_8 |
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| [»] chr3 (7 HSPs) |
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| [»] scaffold0425 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 275; Significance: 1e-154; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 10 - 366
Target Start/End: Original strand, 6557756 - 6558108
Alignment:
| Q |
10 |
gcacacacgttcgcaacaaagaaatttcagtttatgtttctttcatccaacgatgatttggattcgagatagagcctcatgatcatgtgtgggagggaag |
109 |
Q |
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| T |
6557756 |
gcacacacattcgcaacaaagaaatttcagtttatgtttctttcatccaacgatgatttggattcgagatagagcctcatgatcatgtgtggaagggaag |
6557855 |
T |
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| Q |
110 |
agtccgacattgtgtgaattccatccattccaatttgttcatggtttgtattcaagcattataatgaaacatgtttcacttacttttataaatgtcttcc |
209 |
Q |
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| T |
6557856 |
agtctgacattgtgtgaattccatccattccaatttgttcatggtttgtattcaagcattataatgaaacatgtttcacttacttttataagtgtcttct |
6557955 |
T |
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| Q |
210 |
gaaactacgtttcaaagttgtctacaacaaattgacatacaccatattctgactttatggcccatcttttttatttctgtttactctgattgtctgttat |
309 |
Q |
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| T |
6557956 |
gaaactatgtttcaaagctgtctgcaacaaattgacatacaccataatctgactttatggcccatctttttta-ttctgtttacgctgattgtctg---t |
6558051 |
T |
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| Q |
310 |
tcttcttgtgccttcccaggaaacatgagacttgagaaaagaagccgatgaattact |
366 |
Q |
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| T |
6558052 |
ttttcttgtgtctttccgggaaacatgagacttgagaaaaaaagccgatgaattact |
6558108 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 10 - 364
Target Start/End: Original strand, 6526508 - 6526863
Alignment:
| Q |
10 |
gcacacacgttcgcaacaaagaaatttcagtttatgtttctttcatccaacgatgatttggattcgagatagagcctcatgatcatgtgtggg--aggga |
107 |
Q |
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| T |
6526508 |
gcacacaatttcgcaacaaagaaattttggtttttgtttctttcatccaaagatgatttagactcgacgtagagcctcgtgatcatgtgtgggcaaggga |
6526607 |
T |
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| Q |
108 |
agagtccgacattgtgtgaattccatccattccaatttgttcatggtttgtattcaagcattataatgaaacatgtttcacttacttttataaatgtctt |
207 |
Q |
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| T |
6526608 |
agaggctgacattgtttgaattccatccattccaatttgttcatggtttgtattcaagcattataatgaaacatatttcacttacttttataaaggtctt |
6526707 |
T |
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| Q |
208 |
ccgaaactacgtttcaaagttgtctacaacaaattgacatacaccatattctgactttatggcccatcttttttatttctgtttactctgattgtctgtt |
307 |
Q |
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| T |
6526708 |
ctaaaactatgtttcaaagtgttctgcaacaaattgtcatacaccatattctgactttatgagccatctttttta-ttctgtttacgctgattgtctgtt |
6526806 |
T |
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| Q |
308 |
attcttcttgtgccttcccaggaaacatgagacttgagaaaagaagccgatgaatta |
364 |
Q |
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| T |
6526807 |
tttcttcttgtgtcttcccaggaaacatgagacttgagaaaagaagccgatgaatta |
6526863 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 19 - 364
Target Start/End: Original strand, 6848097 - 6848443
Alignment:
| Q |
19 |
ttcgcaacaaagaaatttcagtttatgtttctttcatccaacgatgatttggattcgagatagagcctcatgatcatgtgtggg--agggaagagtccga |
116 |
Q |
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| T |
6848097 |
ttcgcaacaaagaaattttggtttttgtttctttcatccaaagatgatttagactcgacgtagagcctcgtgatcatgtgcgggcaagggaagaggctga |
6848196 |
T |
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| Q |
117 |
cattgtgtgaattccatccattccaatttgttcatggtttgtattcaagcattataatgaaacatgtttcacttacttttataaatgtcttccgaaacta |
216 |
Q |
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| T |
6848197 |
cattgtttgaattccatccattccaatttgttcatggtttgtattcaagcattataatgaaatatatttcacttacttttataaaggtcttctgaaacta |
6848296 |
T |
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| Q |
217 |
cgtttcaaagttgtctacaacaaattgacatacaccatattctgactttatggcccatcttttttatttctgtttactctgattgtctgttattcttctt |
316 |
Q |
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| T |
6848297 |
tgtttcaaagtgttctgcaacaaattgtcatacaccatgttctgactttatgagccatctttttta-ttctgtttacgctgattgtctgtttttcttctt |
6848395 |
T |
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| Q |
317 |
gtgccttcccaggaaacatgagacttgagaaaagaagccgatgaatta |
364 |
Q |
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| T |
6848396 |
gtgtcttcccaggaaacacgagacttgagaaaagaagccgatgaatta |
6848443 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 19 - 355
Target Start/End: Original strand, 6788564 - 6788908
Alignment:
| Q |
19 |
ttcgcaacaaagaaa-tttcagtttatgtttctttcatccaacgatgatttggattcgagatagagcctcatgatcatg---tgtgggagggaagagtcc |
114 |
Q |
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||||||||||||||| ||| || | |||||||||||||||| | || ||||||||| | |||||| ||||||||| || || | ||||||||| | |
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| T |
6788564 |
ttcgcaacaaagaaaattttggtctttgtttctttcatccaaaggtgttttggattcaacatagagtctcatgatcttgacatgggcaagggaagaggct |
6788663 |
T |
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| Q |
115 |
gacattgtgtgaattccatccattccaatttgttcatggtttgtattcaagcattataatgaaacatgtttcacttacttttataaatgtcttccgaaac |
214 |
Q |
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| T |
6788664 |
gacattgtgtgaatttcatccattgcgatttgttcatggtttgtattcaagcattataatgaaacatatttcacttacttttataaagttattctgaaac |
6788763 |
T |
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| Q |
215 |
----tacgtttcaaagttgtctacaacaaattgacatacaccatattctgactttatggcccatcttttttatt-tctgtttactctgattgtctgttat |
309 |
Q |
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| T |
6788764 |
tatatatgtttcaaatttgtatgcaacaaatattcatacaacatattctaactttatgtcccaccgttttgattctct-ttcactctaattgtctgtttt |
6788862 |
T |
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| Q |
310 |
tcttcttgtgccttcccaggaaacatgagacttgagaaaagaagcc |
355 |
Q |
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| T |
6788863 |
ttttcgtgagttttcccagcaaacatgagactcgagaaaagaagcc |
6788908 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 78 - 243
Target Start/End: Original strand, 6549318 - 6549486
Alignment:
| Q |
78 |
atagagcctcatgatcatgtgtggg--agggaagagtccgacattgtgtgaattccatccattccaatttgttcatggtttgtattcaagcattataatg |
175 |
Q |
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| T |
6549318 |
atagagcctcgtgatcatgtggaggcaagggatgaggctgaaattgtgtggattccatctattccaatttgtacatggtttgtattcaagcattataata |
6549417 |
T |
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| Q |
176 |
aaacatgtttcacttacttttataaatgtctt-ccgaaactacgtttcaaagttgtctacaacaaattg |
243 |
Q |
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| T |
6549418 |
aaacatatttcatttacatttataaaggttttactgaaactatgtttcaaatttatttgcaacaaattg |
6549486 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 150 - 196
Target Start/End: Complemental strand, 8468044 - 8467998
Alignment:
| Q |
150 |
atggtttgtattcaagcattataatgaaacatgtttcacttactttt |
196 |
Q |
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| T |
8468044 |
atggtttgtattcaagcattataaagaaacatgtttcactaactttt |
8467998 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 300 - 362
Target Start/End: Original strand, 6549525 - 6549587
Alignment:
| Q |
300 |
tgtctgttattcttcttgtgccttcccaggaaacatgagacttgagaaaagaagccgatgaat |
362 |
Q |
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| T |
6549525 |
tgtctgtttttcttctcatgtcttcccagaaagcatgagacttgagaaaagaaactgatgaat |
6549587 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0425 (Bit Score: 206; Significance: 1e-112; HSPs: 1)
Name: scaffold0425
Description:
Target: scaffold0425; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 22 - 364
Target Start/End: Original strand, 11227 - 11570
Alignment:
| Q |
22 |
gcaacaaagaaatttcagtttatgtttctttcatccaacgatgatttggattcgagatagagcctcatgatcatgtgtggg--agggaagagtccgacat |
119 |
Q |
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| T |
11227 |
gcaacagagaaattttggtttttgtttctttcagccaaagatgatttagactcgacgtagagcctcgtgatcatgtgcgggcaagggaagaggctgacat |
11326 |
T |
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| Q |
120 |
tgtgtgaattccatccattccaatttgttcatggtttgtattcaagcattataatgaaacatgtttcacttacttttataaatgtcttccgaaactacgt |
219 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||| |||||| ||||||| || |
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| T |
11327 |
tgtttgaattccatccattccaatttgttcatggtttgtattcaagcattataatgaaaaatatttcacttacttttataaaggtcttctgaaactatgt |
11426 |
T |
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| Q |
220 |
ttcaaagttgtctacaacaaattgacatacaccatattctgactttatggcccatcttttttatttctgtttactctgattgtctgttattcttcttgtg |
319 |
Q |
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| T |
11427 |
ttcaaagtgttctgcaacaaattgtcatacaccatattctgactttatgagccatctttatta-ttctgtttacgctgattgtctgtttttcttcttgtg |
11525 |
T |
|
| Q |
320 |
ccttcccaggaaacatgagacttgagaaaagaagccgatgaatta |
364 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11526 |
tcttcccaggaaacatgagacttgagaaaagaagccgatgaatta |
11570 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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