View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7706_high_9 (Length: 343)
Name: NF7706_high_9
Description: NF7706
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7706_high_9 |
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Alignment Details
Target: chr1 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 1 - 328
Target Start/End: Original strand, 7163968 - 7164307
Alignment:
| Q |
1 |
atagaaataggagaccaccatgtaaagctaaataatannnnnnn-------cttcataattttccattttctcaaggcttaagctttcaacattttgcaa |
93 |
Q |
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| T |
7163968 |
atagaaataggagaccaccatgtaaagctaaataatagtactattttttttcttcataattttccattttctcaaggcttaagctttcaacattttgcaa |
7164067 |
T |
|
| Q |
94 |
ataaatattattcaataattcattatcttttcctttttcgtgtagctctcaataaggaac-----aaagagatagaaaacattcaagtaagtttgggctt |
188 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
7164068 |
ataaataatattcaataattcattatcttttcctttttcgtgtagctctcaataaggaacaaatgaaagagatagaaaacattcaagtaagtttgggctt |
7164167 |
T |
|
| Q |
189 |
caacaggattgcacaaacattccagctaataaagaaaatctcaaggaat----taagatcctaaagccatcacatgcagatacacacataaagacacata |
284 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||| |||| ||||||||||||||||||| |
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| T |
7164168 |
caacaggattgcacaaacattccagctactaaagaaaatctcaaggaattaagtaagatcctaaagccatca----cagaaacacacataaagacacata |
7164263 |
T |
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| Q |
285 |
gcctatacttatttatttatgtgtgacaccattacttattggtg |
328 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7164264 |
gcctatacttatttatttatgtgtgacaccattacttattggtg |
7164307 |
T |
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