View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7706_low_1 (Length: 915)

Name: NF7706_low_1
Description: NF7706
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7706_low_1
NF7706_low_1
[»] chr1 (4 HSPs)
chr1 (1-471)||(10011571-10012040)
chr1 (419-467)||(29836243-29836291)
chr1 (273-325)||(39076149-39076201)
chr1 (419-467)||(40981614-40981662)
[»] chr4 (16 HSPs)
chr4 (470-896)||(26315236-26315665)
chr4 (204-309)||(11215021-11215127)
chr4 (204-309)||(11225532-11225638)
chr4 (421-467)||(14210441-14210487)
chr4 (421-467)||(14211410-14211456)
chr4 (421-467)||(14212361-14212407)
chr4 (421-467)||(14213330-14213376)
chr4 (421-467)||(14214298-14214344)
chr4 (421-467)||(14215267-14215313)
chr4 (421-467)||(14218138-14218184)
chr4 (421-467)||(14219108-14219154)
chr4 (421-467)||(14220077-14220123)
chr4 (421-467)||(14221028-14221074)
chr4 (421-467)||(14221997-14222043)
chr4 (421-467)||(14222966-14223012)
chr4 (429-467)||(37619002-37619040)
[»] chr5 (5 HSPs)
chr5 (639-850)||(11755402-11755606)
chr5 (416-467)||(4077842-4077893)
chr5 (417-467)||(40946714-40946764)
chr5 (416-466)||(16352147-16352197)
chr5 (431-471)||(33553600-33553640)
[»] chr8 (3 HSPs)
chr8 (640-713)||(35219835-35219908)
chr8 (417-467)||(26955416-26955466)
chr8 (416-467)||(38681141-38681192)
[»] chr3 (3 HSPs)
chr3 (419-467)||(29129134-29129182)
chr3 (431-467)||(44712575-44712611)
chr3 (416-467)||(52126889-52126940)
[»] chr7 (5 HSPs)
chr7 (416-467)||(24759478-24759529)
chr7 (419-467)||(1971096-1971144)
chr7 (379-467)||(13761785-13761872)
chr7 (274-325)||(13761887-13761938)
chr7 (419-464)||(11503211-11503256)
[»] chr2 (2 HSPs)
chr2 (390-467)||(4768482-4768559)
chr2 (418-467)||(26449097-26449146)
[»] chr6 (1 HSPs)
chr6 (416-471)||(23073454-23073509)


Alignment Details
Target: chr1 (Bit Score: 414; Significance: 0; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 414; E-Value: 0
Query Start/End: Original strand, 1 - 471
Target Start/End: Original strand, 10011571 - 10012040
Alignment:
Q  1 cactgtgattcctatagttagcatgggaagaagagctagaatnnnnnnngttatgatagatgctggtttagtgtgtgaacatgcgtgggaaatagatcag 100  Q
    |||||||||||||| |||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10011571 cactgtgattcctaaagttagcatgggaagaagagctagaataaaaaaagttatgatagatgctggtttagtgtgtgaacatgcgtgggaaatagatcag 10011670  T
Q  101 ctgcatgttttccatatagtacaccaaggtacattattaattgtggtaagaaagcaacgtctgaaggtctatatgtgagccatggagaatataaatggtt 200  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10011671 ctgcatgttttccatatagtacaccaaggta-attattaattgtggtaagaaagcaacgtctgaaggtctatatgtgagccatggagaatataaatggtt 10011769  T
Q  201 tttggatgtattgagtgtttactgactcatggttagtaacatccatatataggcatagagtgcaggcaaatagtgtacctaggtgcatggaaaatatacc 300  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  10011770 tttggatgtattgattgtttactgactcatggttagtaacatccatatataggcatagagtgcaggcaaatagtgtatctaggtgcatggaaaatatacc 10011869  T
Q  301 gaaataaattctgagtgggaaggcttagagttttgtcattccaagacacttcattcaattaattaaggagggaagagctgatttcgaaatttaaattatt 400  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10011870 gaaataaattctgagtgggaaggcttagagttttgtcattccaagatacttcattcaattaattaaggagggaagagctgatttcgaaatttaaattatt 10011969  T
Q  401 tggagccattttgttggattagggttttggaattaggataaacatgtttgctaggattagatataaaagat 471  Q
    ||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||| |||||||||||    
T  10011970 tggagccattttgttggattagggttttggaattagggtaagcatgtttgctaggattaaatataaaagat 10012040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 419 - 467
Target Start/End: Complemental strand, 29836291 - 29836243
Alignment:
Q  419 ttagggttttggaattaggataaacatgtttgctaggattagatataaa 467  Q
    ||||||||| | ||||||| |||||||||||||||||||||||||||||    
T  29836291 ttagggtttggcaattagggtaaacatgtttgctaggattagatataaa 29836243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 273 - 325
Target Start/End: Original strand, 39076149 - 39076201
Alignment:
Q  273 gtgtacctaggtgcatggaaaatataccgaaataaattctgagtgggaaggct 325  Q
    |||||||||||||||||||||| | ||| | |||||||||||||| |||||||    
T  39076149 gtgtacctaggtgcatggaaaacaaaccaacataaattctgagtgagaaggct 39076201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 419 - 467
Target Start/End: Original strand, 40981614 - 40981662
Alignment:
Q  419 ttagggttttggaattaggataaacatgtttgctaggattagatataaa 467  Q
    ||||||||| | ||||||| ||| |||||||||||||||||||||||||    
T  40981614 ttagggtttggaaattagggtaagcatgtttgctaggattagatataaa 40981662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 342; Significance: 0; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 470 - 896
Target Start/End: Original strand, 26315236 - 26315665
Alignment:
Q  470 atcaacagtaaaataatttttcatgttcaaatataaaatagtctcacttcatcactaggcttttgtgaagttccatcccagttctatgaagc-ttcatgc 568  Q
    |||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  26315236 atcaacagtaaagtaatttttcatattcaaatataaaatagtctcacttcatcactaggcttttgtgaagttccatcccagttctatgaagccttcatgc 26315335  T
Q  569 ttagtcatcaacattannnnnnnnn---gtaattttagctaaatgtgggattaagataggcaaaatgattatgtatgatgaaaccacaccatgtcatgca 665  Q
    ||||||||||||||||            |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26315336 ttagtcatcaacattattttttttttttgtaattttggctaaatgtgggattaagataggcaaaatgattatgtatgatgaaaccacaccatgtcatgca 26315435  T
Q  666 attaaaatttaaaattatcactgaatttttcacaacatgtttagattattgattaactcgctttgtattggaaaattggttatcgtgattctagttgacc 765  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| | |||||||||||||||| ||||||||| |||||    
T  26315436 attaaaatttaaaattatcactgaaattttcacaacatgtttagattattgattaactcgctttgcactggaaaattggttatcatgattctagatgacc 26315535  T
Q  766 ttgatattatcgaattgattagatcaaaagttagtttaaattgaagtgatttgagtttgattataactttgaagttaatttgatgttaaaaagttcaacc 865  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26315536 ttgatattatcgaattgattagatcaaaagttagtttaaattgaagtgatttgagtttgattataactttgaagttaatttgatgttaaaaagttcaacc 26315635  T
Q  866 aaaacacaaaagtgatcttacatagtatctc 896  Q
     ||||||||||||||||||||||||||||||    
T  26315636 -aaacacaaaagtgatcttacatagtatctc 26315665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 204 - 309
Target Start/End: Complemental strand, 11215127 - 11215021
Alignment:
Q  204 ggatgtattgagtgtttactgactcatggttagtaacatccatatataggcatagagtgcaggcaaata-gtgtacctaggtgcatggaaaatataccga 302  Q
    |||||| ||||||  ||||||||| ||||||| |||||||| ||||||||||||    ||| ||||| | |||||| ||||||||||||||||||| ||     
T  11215127 ggatgttttgagtaattactgactgatggttattaacatccttatataggcataattagcatgcaaaaacgtgtacataggtgcatggaaaatataacgt 11215028  T
Q  303 aataaat 309  Q
    |||||||    
T  11215027 aataaat 11215021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 204 - 309
Target Start/End: Complemental strand, 11225638 - 11225532
Alignment:
Q  204 ggatgtattgagtgtttactgactcatggttagtaacatccatatataggcatagagtgcaggcaaata-gtgtacctaggtgcatggaaaatataccga 302  Q
    |||||| ||||||  ||||||||| ||||||| |||||||| ||||||||||||    ||| ||||| | |||||| ||||||||||||||||||| ||     
T  11225638 ggatgttttgagtaattactgactgatggttattaacatccttatataggcataattagcatgcaaaaacgtgtacataggtgcatggaaaatataacgt 11225539  T
Q  303 aataaat 309  Q
    |||||||    
T  11225538 aataaat 11225532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 421 - 467
Target Start/End: Original strand, 14210441 - 14210487
Alignment:
Q  421 agggttttggaattaggataaacatgtttgctaggattagatataaa 467  Q
    ||||||| | ||||||| ||| |||||||||||||||||||||||||    
T  14210441 agggtttggaaattagggtaagcatgtttgctaggattagatataaa 14210487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 421 - 467
Target Start/End: Original strand, 14211410 - 14211456
Alignment:
Q  421 agggttttggaattaggataaacatgtttgctaggattagatataaa 467  Q
    ||||||| | ||||||| ||| |||||||||||||||||||||||||    
T  14211410 agggtttggaaattagggtaagcatgtttgctaggattagatataaa 14211456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 421 - 467
Target Start/End: Original strand, 14212361 - 14212407
Alignment:
Q  421 agggttttggaattaggataaacatgtttgctaggattagatataaa 467  Q
    ||||||| | ||||||| ||| |||||||||||||||||||||||||    
T  14212361 agggtttggaaattagggtaagcatgtttgctaggattagatataaa 14212407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 421 - 467
Target Start/End: Original strand, 14213330 - 14213376
Alignment:
Q  421 agggttttggaattaggataaacatgtttgctaggattagatataaa 467  Q
    ||||||| | ||||||| ||| |||||||||||||||||||||||||    
T  14213330 agggtttggaaattagggtaagcatgtttgctaggattagatataaa 14213376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 421 - 467
Target Start/End: Original strand, 14214298 - 14214344
Alignment:
Q  421 agggttttggaattaggataaacatgtttgctaggattagatataaa 467  Q
    ||||||| | ||||||| ||| |||||||||||||||||||||||||    
T  14214298 agggtttggaaattagggtaagcatgtttgctaggattagatataaa 14214344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 421 - 467
Target Start/End: Original strand, 14215267 - 14215313
Alignment:
Q  421 agggttttggaattaggataaacatgtttgctaggattagatataaa 467  Q
    ||||||| | ||||||| ||| |||||||||||||||||||||||||    
T  14215267 agggtttggaaattagggtaagcatgtttgctaggattagatataaa 14215313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 421 - 467
Target Start/End: Original strand, 14218138 - 14218184
Alignment:
Q  421 agggttttggaattaggataaacatgtttgctaggattagatataaa 467  Q
    ||||||| | ||||||| ||| |||||||||||||||||||||||||    
T  14218138 agggtttggaaattagggtaagcatgtttgctaggattagatataaa 14218184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 421 - 467
Target Start/End: Original strand, 14219108 - 14219154
Alignment:
Q  421 agggttttggaattaggataaacatgtttgctaggattagatataaa 467  Q
    ||||||| | ||||||| ||| |||||||||||||||||||||||||    
T  14219108 agggtttggaaattagggtaagcatgtttgctaggattagatataaa 14219154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 421 - 467
Target Start/End: Original strand, 14220077 - 14220123
Alignment:
Q  421 agggttttggaattaggataaacatgtttgctaggattagatataaa 467  Q
    ||||||| | ||||||| ||| |||||||||||||||||||||||||    
T  14220077 agggtttggaaattagggtaagcatgtttgctaggattagatataaa 14220123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 421 - 467
Target Start/End: Original strand, 14221028 - 14221074
Alignment:
Q  421 agggttttggaattaggataaacatgtttgctaggattagatataaa 467  Q
    ||||||| | ||||||| ||| |||||||||||||||||||||||||    
T  14221028 agggtttggaaattagggtaagcatgtttgctaggattagatataaa 14221074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 421 - 467
Target Start/End: Original strand, 14221997 - 14222043
Alignment:
Q  421 agggttttggaattaggataaacatgtttgctaggattagatataaa 467  Q
    ||||||| | ||||||| ||| |||||||||||||||||||||||||    
T  14221997 agggtttggaaattagggtaagcatgtttgctaggattagatataaa 14222043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 421 - 467
Target Start/End: Original strand, 14222966 - 14223012
Alignment:
Q  421 agggttttggaattaggataaacatgtttgctaggattagatataaa 467  Q
    ||||||| | ||||||| ||| |||||||||||||||||||||||||    
T  14222966 agggtttggaaattagggtaagcatgtttgctaggattagatataaa 14223012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 429 - 467
Target Start/End: Original strand, 37619002 - 37619040
Alignment:
Q  429 ggaattaggataaacatgtttgctaggattagatataaa 467  Q
    ||||||||| ||| |||||||||||||||||||||||||    
T  37619002 ggaattagggtaagcatgtttgctaggattagatataaa 37619040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 74; Significance: 2e-33; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 639 - 850
Target Start/End: Original strand, 11755402 - 11755606
Alignment:
Q  639 tatgatgaaaccacaccatgtcatgcaattaaaatttaaaattatcactgaatttttcacaacatgtttagattattgattaactcgctttgtattggaa 738  Q
    |||||| |||||||||||||||||||||| | |||||| |||||||| ||||||||||| ||||||||||||||        ||||  | || |  |||     
T  11755402 tatgattaaaccacaccatgtcatgcaatcagaatttagaattatcattgaatttttcataacatgtttagattg-------actcattctgcaccggac 11755494  T
Q  739 aattggttatcgtgattctagttgaccttgatattatcgaattgattagatcaaaagttagtttaaattgaagtgatttgagtttgattataactttgaa 838  Q
    |||| |||||||||||||| | | || |||||| |||||||||||||||||||||||||||||| || ||||  ||||||||||||||  |||  |||||    
T  11755495 aatttgttatcgtgattctcgataactttgatactatcgaattgattagatcaaaagttagtttgaagtgaaaagatttgagtttgatattaatattgaa 11755594  T
Q  839 gttaatttgatg 850  Q
    ||||||||||||    
T  11755595 gttaatttgatg 11755606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 416 - 467
Target Start/End: Complemental strand, 4077893 - 4077842
Alignment:
Q  416 ggattagggttttggaattaggataaacatgtttgctaggattagatataaa 467  Q
    |||||||||||| | ||||||||||| |||||||||||||||||||||||||    
T  4077893 ggattagggtttggcaattaggataagcatgtttgctaggattagatataaa 4077842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 417 - 467
Target Start/End: Complemental strand, 40946764 - 40946714
Alignment:
Q  417 gattagggttttggaattaggataaacatgtttgctaggattagatataaa 467  Q
    ||||||||||| | ||||||| |||||||||||||||||||||||||||||    
T  40946764 gattagggtttggcaattagggtaaacatgtttgctaggattagatataaa 40946714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 416 - 466
Target Start/End: Original strand, 16352147 - 16352197
Alignment:
Q  416 ggattagggttttggaattaggataaacatgtttgctaggattagatataa 466  Q
    |||||||||||| | ||||||| ||| ||||||||||||||||||||||||    
T  16352147 ggattagggtttggcaattagggtaagcatgtttgctaggattagatataa 16352197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 431 - 471
Target Start/End: Complemental strand, 33553640 - 33553600
Alignment:
Q  431 aattaggataaacatgtttgctaggattagatataaaagat 471  Q
    ||||||||||| ||| |||||||||||||||||||||||||    
T  33553640 aattaggataagcatatttgctaggattagatataaaagat 33553600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 50; Significance: 4e-19; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 640 - 713
Target Start/End: Original strand, 35219835 - 35219908
Alignment:
Q  640 atgatgaaaccacaccatgtcatgcaattaaaatttaaaattatcactgaatttttcacaacatgtttagatta 713  Q
    |||||||||||||||||||||||| ||  ||||||||||||||||| |||||||| || |||||||||||||||    
T  35219835 atgatgaaaccacaccatgtcatgtaaacaaaatttaaaattatcattgaattttacaaaacatgtttagatta 35219908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 417 - 467
Target Start/End: Complemental strand, 26955466 - 26955416
Alignment:
Q  417 gattagggttttggaattaggataaacatgtttgctaggattagatataaa 467  Q
    ||||||||||| | ||||||| |||||||||||||||| ||||||||||||    
T  26955466 gattagggtttggcaattagggtaaacatgtttgctagaattagatataaa 26955416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 416 - 467
Target Start/End: Complemental strand, 38681192 - 38681141
Alignment:
Q  416 ggattagggttttggaattaggataaacatgtttgctaggattagatataaa 467  Q
    |||||||||||| | || |||| ||| |||||||||||||||||||||||||    
T  38681192 ggattagggtttagcaaatagggtaagcatgtttgctaggattagatataaa 38681141  T

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Target: chr3 (Bit Score: 37; Significance: 0.00000000002; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 419 - 467
Target Start/End: Complemental strand, 29129182 - 29129134
Alignment:
Q  419 ttagggttttggaattaggataaacatgtttgctaggattagatataaa 467  Q
    ||||||||| | ||||||| |||||||||||||||||||||||||||||    
T  29129182 ttagggtttggcaattagggtaaacatgtttgctaggattagatataaa 29129134  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 431 - 467
Target Start/End: Original strand, 44712575 - 44712611
Alignment:
Q  431 aattaggataaacatgtttgctaggattagatataaa 467  Q
    ||||||||||||||||||||||||||||| |||||||    
T  44712575 aattaggataaacatgtttgctaggattatatataaa 44712611  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 416 - 467
Target Start/End: Complemental strand, 52126940 - 52126889
Alignment:
Q  416 ggattagggttttggaattaggataaacatgtttgctaggattagatataaa 467  Q
    |||||||||||  | ||||||| ||| |||||||||||||||||||||||||    
T  52126940 ggattagggttaagaaattagggtaagcatgtttgctaggattagatataaa 52126889  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000009; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 416 - 467
Target Start/End: Complemental strand, 24759529 - 24759478
Alignment:
Q  416 ggattagggttttggaattaggataaacatgtttgctaggattagatataaa 467  Q
    |||||||||||  | ||||||| |||||||||||||||||||||||||||||    
T  24759529 ggattagggttaagaaattagggtaaacatgtttgctaggattagatataaa 24759478  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 419 - 467
Target Start/End: Complemental strand, 1971144 - 1971096
Alignment:
Q  419 ttagggttttggaattaggataaacatgtttgctaggattagatataaa 467  Q
    ||||||||| | ||||||| ||| |||||||||||||||||||||||||    
T  1971144 ttagggtttggaaattagggtaagcatgtttgctaggattagatataaa 1971096  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 379 - 467
Target Start/End: Complemental strand, 13761872 - 13761785
Alignment:
Q  379 tgatttcgaaatttaaattatttggagccattttgttggattagggttttggaattaggataaacatgtttgctaggattagatataaa 467  Q
    ||||||| ||||| ||||| |||| ||||||||| | |||||||| || || ||||||| |   |||||||||||||||||||||||||    
T  13761872 tgatttctaaattcaaatt-tttgaagccattttttaggattaggtttatgcaattagggtttgcatgtttgctaggattagatataaa 13761785  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 274 - 325
Target Start/End: Complemental strand, 13761938 - 13761887
Alignment:
Q  274 tgtacctaggtgcatggaaaatataccgaaataaattctgagtgggaaggct 325  Q
    |||||||||||||||||||||   ||| | ||||||||||||||||||||||    
T  13761938 tgtacctaggtgcatggaaaaccgaccaatataaattctgagtgggaaggct 13761887  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 419 - 464
Target Start/End: Complemental strand, 11503256 - 11503211
Alignment:
Q  419 ttagggttttggaattaggataaacatgtttgctaggattagatat 464  Q
    ||||||||| | |||||||||||| ||||||| |||||||||||||    
T  11503256 ttagggtttcgcaattaggataaatatgtttggtaggattagatat 11503211  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 390 - 467
Target Start/End: Complemental strand, 4768559 - 4768482
Alignment:
Q  390 tttaaattatttggagccattttgtt-ggattagggttttggaattaggataaacatgtttgctaggattagatataaa 467  Q
    |||||||| |||||||||||||| || || |||||||||   ||||||||||| ||||||||||| |||||||||||||    
T  4768559 tttaaatt-tttggagccatttttttaggtttagggtttgacaattaggataagcatgtttgctaagattagatataaa 4768482  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 418 - 467
Target Start/End: Complemental strand, 26449146 - 26449097
Alignment:
Q  418 attagggttttggaattaggataaacatgtttgctaggattagatataaa 467  Q
    |||||||||| | ||||||| ||| |||||||||||||||||||||||||    
T  26449146 attagggtttggcaattagggtaagcatgtttgctaggattagatataaa 26449097  T

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Target: chr6 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 416 - 471
Target Start/End: Original strand, 23073454 - 23073509
Alignment:
Q  416 ggattagggttttggaattaggataaacatgtttgctaggattagatataaaagat 471  Q
    ||||||||||||   ||||||| ||| ||||||||| |||||||||||||||||||    
T  23073454 ggattagggtttgacaattagggtaagcatgtttgcaaggattagatataaaagat 23073509  T

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