View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7706_low_18 (Length: 278)
Name: NF7706_low_18
Description: NF7706
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7706_low_18 |
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| [»] scaffold0421 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 252; Significance: 1e-140; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 1 - 260
Target Start/End: Original strand, 15930323 - 15930582
Alignment:
| Q |
1 |
gaaagaatatagagaaagagttttgtaaaaatatattgaatatgaagcccgtaagtcttcgatgtaggatgaaatagatggaaaacaaatatcttgtcaa |
100 |
Q |
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| T |
15930323 |
gaaagaatatagagaaagagttttgtaaaaatatattgaatatgaagcccataagtcttcgatgtaggatgaaatagatggaaaacaaatatcttgtcaa |
15930422 |
T |
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| Q |
101 |
ctgcaaatggaatcatgaaattaaattaaatttagtggtttgtttcacataaggctctaaaaggatggatagtcaagaagatagagaaggagtggagaag |
200 |
Q |
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| T |
15930423 |
ttgcaaatggaatcatgaaattaaattaaatttagtggtttgtttcacataaggctctaaaaggatggatagtcaagaagatagagaaggagtggagaag |
15930522 |
T |
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| Q |
201 |
ggagtacaaacaaaaagaagtagtcaagaagatgaacttgaatagatacagtggtctaac |
260 |
Q |
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| T |
15930523 |
ggagtacaaacaaaaagaagtagtcaagaagatgaacttgaatagatacagtggtctaac |
15930582 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0421 (Bit Score: 248; Significance: 1e-138; HSPs: 1)
Name: scaffold0421
Description:
Target: scaffold0421; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 1 - 260
Target Start/End: Complemental strand, 5236 - 4977
Alignment:
| Q |
1 |
gaaagaatatagagaaagagttttgtaaaaatatattgaatatgaagcccgtaagtcttcgatgtaggatgaaatagatggaaaacaaatatcttgtcaa |
100 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5236 |
gaaagaatatagagaatgagttttgtaaaaatatattgaatatgaagcccataagtcttcgatgtaggatgaaatagatggaaaacaaatatcttgtcaa |
5137 |
T |
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| Q |
101 |
ctgcaaatggaatcatgaaattaaattaaatttagtggtttgtttcacataaggctctaaaaggatggatagtcaagaagatagagaaggagtggagaag |
200 |
Q |
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| T |
5136 |
ttgcaaatggaatcatgaaattaaattaaatttagtggtttgtttcacataaggctctaaaaggatggatagtcaagaagatagagaaggagtggagaag |
5037 |
T |
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| Q |
201 |
ggagtacaaacaaaaagaagtagtcaagaagatgaacttgaatagatacagtggtctaac |
260 |
Q |
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| T |
5036 |
ggagtacaaacaaaaagaagtagtcaagaagatgaacttgaatagatacagtggtctaac |
4977 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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