View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7706_low_24 (Length: 237)

Name: NF7706_low_24
Description: NF7706
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7706_low_24
NF7706_low_24
[»] chr4 (16 HSPs)
chr4 (129-196)||(39480004-39480071)
chr4 (132-193)||(24610837-24610898)
chr4 (129-193)||(7413497-7413561)
chr4 (129-193)||(7459578-7459642)
chr4 (129-193)||(10094774-10094838)
chr4 (129-193)||(28803660-28803724)
chr4 (2-40)||(36213890-36213928)
chr4 (2-40)||(6261516-6261554)
chr4 (2-44)||(7413647-7413689)
chr4 (2-44)||(7459728-7459770)
chr4 (2-44)||(10094925-10094967)
chr4 (2-44)||(28803797-28803839)
chr4 (2-44)||(31915626-31915668)
chr4 (152-196)||(21320496-21320540)
chr4 (12-40)||(39480159-39480187)
chr4 (153-193)||(41508857-41508897)
[»] chr8 (16 HSPs)
chr8 (129-193)||(7972737-7972801)
chr8 (129-196)||(16730014-16730082)
chr8 (137-193)||(31597816-31597872)
chr8 (129-193)||(1981870-1981934)
chr8 (132-199)||(15663431-15663498)
chr8 (2-40)||(16729888-16729926)
chr8 (12-44)||(40971595-40971627)
chr8 (2-44)||(1981755-1981797)
chr8 (2-44)||(31597681-31597723)
chr8 (2-44)||(45117625-45117667)
chr8 (152-201)||(35824427-35824476)
chr8 (133-193)||(40971715-40971776)
chr8 (152-193)||(45117764-45117805)
chr8 (129-193)||(9381595-9381659)
chr8 (129-196)||(11647861-11647929)
chr8 (152-192)||(23231752-23231792)
[»] chr5 (18 HSPs)
chr5 (129-193)||(9409316-9409380)
chr5 (129-193)||(23963135-23963199)
chr5 (129-193)||(5578363-5578427)
chr5 (137-193)||(13382354-13382410)
chr5 (129-193)||(42879879-42879943)
chr5 (2-44)||(5578512-5578554)
chr5 (129-193)||(2677252-2677316)
chr5 (133-193)||(13490669-13490729)
chr5 (2-44)||(13490548-13490590)
chr5 (129-193)||(6769107-6769172)
chr5 (144-193)||(41871403-41871452)
chr5 (129-193)||(18889351-18889414)
chr5 (129-193)||(39537170-39537233)
chr5 (2-44)||(13382503-13382545)
chr5 (2-44)||(23963009-23963051)
chr5 (129-193)||(43170778-43170843)
chr5 (129-196)||(8805775-8805842)
chr5 (12-40)||(9409468-9409496)
[»] chr2 (18 HSPs)
chr2 (129-193)||(7444196-7444260)
chr2 (129-193)||(19686078-19686142)
chr2 (129-193)||(22575738-22575802)
chr2 (129-196)||(25622105-25622173)
chr2 (129-193)||(27861592-27861656)
chr2 (129-193)||(33014947-33015011)
chr2 (2-44)||(7444080-7444122)
chr2 (12-44)||(27861730-27861762)
chr2 (150-193)||(18580968-18581011)
chr2 (150-193)||(38698798-38698841)
chr2 (2-44)||(2554214-2554256)
chr2 (129-198)||(14904695-14904765)
chr2 (2-44)||(41825868-41825910)
chr2 (2-44)||(44322125-44322167)
chr2 (133-193)||(31548614-31548675)
chr2 (151-196)||(38565823-38565868)
chr2 (152-196)||(30387378-30387422)
chr2 (129-193)||(44313797-44313861)
[»] chr3 (16 HSPs)
chr3 (133-196)||(33100183-33100246)
chr3 (129-193)||(25071928-25071991)
chr3 (129-193)||(10993916-10993980)
chr3 (129-193)||(15761144-15761208)
chr3 (150-193)||(1418213-1418256)
chr3 (129-192)||(40145762-40145824)
chr3 (150-193)||(1425064-1425107)
chr3 (150-193)||(22918438-22918481)
chr3 (150-193)||(27941270-27941313)
chr3 (150-193)||(30378911-30378954)
chr3 (2-44)||(10994052-10994094)
chr3 (2-40)||(52448301-52448339)
chr3 (2-44)||(53076871-53076913)
chr3 (156-196)||(17147407-17147447)
chr3 (129-193)||(19157379-19157443)
chr3 (135-198)||(30190261-30190325)
[»] chr1 (27 HSPs)
chr1 (151-200)||(47396846-47396895)
chr1 (129-196)||(25095454-25095521)
chr1 (129-191)||(17967080-17967142)
chr1 (129-193)||(8737655-8737719)
chr1 (129-193)||(21906665-21906729)
chr1 (129-193)||(23663863-23663927)
chr1 (129-193)||(48999688-48999752)
chr1 (2-44)||(23664011-23664053)
chr1 (152-193)||(27430551-27430592)
chr1 (129-193)||(44310934-44310998)
chr1 (14-44)||(25095339-25095369)
chr1 (2-44)||(26465236-26465278)
chr1 (2-44)||(27430701-27430743)
chr1 (2-44)||(34307349-34307391)
chr1 (2-44)||(44310806-44310848)
chr1 (2-44)||(48596255-48596297)
chr1 (150-199)||(1345790-1345839)
chr1 (152-193)||(26465374-26465415)
chr1 (129-190)||(48596107-48596168)
chr1 (129-193)||(5049740-5049804)
chr1 (12-44)||(8737793-8737825)
chr1 (2-42)||(9023582-9023622)
chr1 (129-193)||(9023714-9023778)
chr1 (12-44)||(17967227-17967259)
chr1 (129-193)||(22070788-22070851)
chr1 (153-193)||(33048693-33048733)
chr1 (137-193)||(34306998-34307054)
[»] chr7 (7 HSPs)
chr7 (129-193)||(31072278-31072342)
chr7 (129-193)||(8389049-8389113)
chr7 (129-193)||(23305932-23305996)
chr7 (2-44)||(20394689-20394731)
chr7 (129-193)||(1623817-1623881)
chr7 (129-193)||(20394540-20394604)
chr7 (150-193)||(15678518-15678561)
[»] scaffold0093 (2 HSPs)
scaffold0093 (129-193)||(51133-51197)
scaffold0093 (12-44)||(51016-51048)
[»] chr6 (16 HSPs)
chr6 (129-193)||(21442868-21442932)
chr6 (129-193)||(1603657-1603721)
chr6 (129-193)||(18675639-18675702)
chr6 (129-193)||(34043830-34043894)
chr6 (2-44)||(1423113-1423155)
chr6 (2-44)||(18675511-18675553)
chr6 (129-193)||(1423241-1423304)
chr6 (150-193)||(31473860-31473903)
chr6 (2-44)||(15060301-15060343)
chr6 (2-40)||(20990597-20990635)
chr6 (2-44)||(22012019-22012061)
chr6 (129-193)||(13758337-13758402)
chr6 (129-193)||(15060428-15060493)
chr6 (12-44)||(1131940-1131972)
chr6 (133-193)||(20990729-20990789)
chr6 (129-193)||(22011870-22011934)
[»] scaffold0311 (1 HSPs)
scaffold0311 (144-193)||(4576-4625)


Alignment Details
Target: chr4 (Bit Score: 52; Significance: 6e-21; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 129 - 196
Target Start/End: Complemental strand, 39480071 - 39480004
Alignment:
Q  129 tatgatgtattatgtaaggaaccttttttcatattatgcctaagacctataaaactctaggaacgacc 196  Q
    |||||| ||||||||||||| ||||||||||||||||||||||| || ||||||||||||||||||||    
T  39480071 tatgatctattatgtaaggacccttttttcatattatgcctaaggcccataaaactctaggaacgacc 39480004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 132 - 193
Target Start/End: Complemental strand, 24610898 - 24610837
Alignment:
Q  132 gatgtattatgtaaggaaccttttttcatattatgcctaagacctataaaactctaggaacg 193  Q
    ||||||||||||||||  |||||| ||||||||||||||| |||| ||||||||| ||||||    
T  24610898 gatgtattatgtaagggcccttttctcatattatgcctaaaacctgtaaaactctcggaacg 24610837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 129 - 193
Target Start/End: Complemental strand, 7413561 - 7413497
Alignment:
Q  129 tatgatgtattatgtaaggaaccttttttcatattatgcctaagacctataaaactctaggaacg 193  Q
    ||||||| |||||||||||  |||||||||||||||||| |||| ||  ||||||||||||||||    
T  7413561 tatgatgcattatgtaagggcccttttttcatattatgcgtaaggcccgtaaaactctaggaacg 7413497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 129 - 193
Target Start/End: Complemental strand, 7459642 - 7459578
Alignment:
Q  129 tatgatgtattatgtaaggaaccttttttcatattatgcctaagacctataaaactctaggaacg 193  Q
    ||||||| |||||||||||  |||||||||||||||||| |||| ||  ||||||||||||||||    
T  7459642 tatgatgcattatgtaagggcccttttttcatattatgcgtaaggcccgtaaaactctaggaacg 7459578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 129 - 193
Target Start/End: Complemental strand, 10094838 - 10094774
Alignment:
Q  129 tatgatgtattatgtaaggaaccttttttcatattatgcctaagacctataaaactctaggaacg 193  Q
    ||||||| ||||| |||||  ||||||||||||||||||||||| ||  ||||||||||||||||    
T  10094838 tatgatgcattatataagggcccttttttcatattatgcctaaggcccgtaaaactctaggaacg 10094774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 129 - 193
Target Start/End: Complemental strand, 28803724 - 28803660
Alignment:
Q  129 tatgatgtattatgtaaggaaccttttttcatattatgcctaagacctataaaactctaggaacg 193  Q
    ||||||| |||||||||||  | ||||||||||||||||||||| ||  ||||||||||||||||    
T  28803724 tatgatgcattatgtaagggccattttttcatattatgcctaaggcccgtaaaactctaggaacg 28803660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 2 - 40
Target Start/End: Original strand, 36213890 - 36213928
Alignment:
Q  2 tttggtgttcatagagtatttaatttattttcagatgtt 40  Q
    ||||||||| |||||||||||||||||||||||||||||    
T  36213890 tttggtgtttatagagtatttaatttattttcagatgtt 36213928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 40
Target Start/End: Complemental strand, 6261554 - 6261516
Alignment:
Q  2 tttggtgttcatagagtatttaatttattttcagatgtt 40  Q
    ||||||||  |||||||||||||||||||||||||||||    
T  6261554 tttggtgtatatagagtatttaatttattttcagatgtt 6261516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 44
Target Start/End: Complemental strand, 7413689 - 7413647
Alignment:
Q  2 tttggtgttcatagagtatttaatttattttcagatgttgtct 44  Q
    ||||||||  ||||| |||||||||||||||||||||||||||    
T  7413689 tttggtgtatatagaatatttaatttattttcagatgttgtct 7413647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 44
Target Start/End: Complemental strand, 7459770 - 7459728
Alignment:
Q  2 tttggtgttcatagagtatttaatttattttcagatgttgtct 44  Q
    ||||||||  ||||| |||||||||||||||||||||||||||    
T  7459770 tttggtgtatatagaatatttaatttattttcagatgttgtct 7459728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 44
Target Start/End: Complemental strand, 10094967 - 10094925
Alignment:
Q  2 tttggtgttcatagagtatttaatttattttcagatgttgtct 44  Q
    ||||||||  ||||| |||||||||||||||||||||||||||    
T  10094967 tttggtgtgtatagaatatttaatttattttcagatgttgtct 10094925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 44
Target Start/End: Complemental strand, 28803839 - 28803797
Alignment:
Q  2 tttggtgttcatagagtatttaatttattttcagatgttgtct 44  Q
    ||||||||  ||||| |||||||||||||||||||||||||||    
T  28803839 tttggtgtatatagaatatttaatttattttcagatgttgtct 28803797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 44
Target Start/End: Original strand, 31915626 - 31915668
Alignment:
Q  2 tttggtgttcatagagtatttaatttattttcagatgttgtct 44  Q
    ||||||||| |||| |||||| |||||||||||||||||||||    
T  31915626 tttggtgtttatagtgtatttgatttattttcagatgttgtct 31915668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 196
Target Start/End: Original strand, 21320496 - 21320540
Alignment:
Q  152 ttttttcatattatgcctaagacctataaaactctaggaacgacc 196  Q
    |||| ||||||||||||||||| ||  ||||||||||||||||||    
T  21320496 ttttctcatattatgcctaagatctgaaaaactctaggaacgacc 21320540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 40
Target Start/End: Complemental strand, 39480187 - 39480159
Alignment:
Q  12 atagagtatttaatttattttcagatgtt 40  Q
    |||||||||||||||||||||||||||||    
T  39480187 atagagtatttaatttattttcagatgtt 39480159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 153 - 193
Target Start/End: Complemental strand, 41508897 - 41508857
Alignment:
Q  153 tttttcatattatgcctaagacctataaaactctaggaacg 193  Q
    ||||||||||||||||||||  || ||||||||||||||||    
T  41508897 tttttcatattatgcctaaggtctgtaaaactctaggaacg 41508857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 49; Significance: 4e-19; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 129 - 193
Target Start/End: Complemental strand, 7972801 - 7972737
Alignment:
Q  129 tatgatgtattatgtaaggaaccttttttcatattatgcctaagacctataaaactctaggaacg 193  Q
    |||||| ||||||||||||| ||||||||||||||||||||||| || |||||||||||||||||    
T  7972801 tatgatctattatgtaaggacccttttttcatattatgcctaaggcccataaaactctaggaacg 7972737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 129 - 196
Target Start/End: Original strand, 16730014 - 16730082
Alignment:
Q  129 tatgatgtattatgtaaggaacctttt-ttcatattatgcctaagacctataaaactctaggaacgacc 196  Q
    ||||||||||||||||||| ||||||| ||||||||||||||||| ||  |||||||||||||||||||    
T  16730014 tatgatgtattatgtaagggacctttttttcatattatgcctaaggcccgtaaaactctaggaacgacc 16730082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 137 - 193
Target Start/End: Original strand, 31597816 - 31597872
Alignment:
Q  137 attatgtaaggaaccttttttcatattatgcctaagacctataaaactctaggaacg 193  Q
    |||||||||||  ||||||||||||||||||||||| ||| ||||||||||||||||    
T  31597816 attatgtaagggtccttttttcatattatgcctaaggcctgtaaaactctaggaacg 31597872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 129 - 193
Target Start/End: Original strand, 1981870 - 1981934
Alignment:
Q  129 tatgatgtattatgtaaggaaccttttttcatattatgcctaagacctataaaactctaggaacg 193  Q
    ||||||| ||||| |||||| ||||||||||||||||| ||||| ||  ||||||||||||||||    
T  1981870 tatgatgcattatataaggacccttttttcatattatgtctaaggcccgtaaaactctaggaacg 1981934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 132 - 199
Target Start/End: Original strand, 15663431 - 15663498
Alignment:
Q  132 gatgtattatgtaaggaaccttttttcatattatgcctaagacctataaaactctaggaacgaccatg 199  Q
    ||||||||||||||||  |||||| |||||||||| ||||| ||  ||||||| ||||||||||||||    
T  15663431 gatgtattatgtaaggggccttttctcatattatgtctaagcccgctaaaactataggaacgaccatg 15663498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 2 - 40
Target Start/End: Original strand, 16729888 - 16729926
Alignment:
Q  2 tttggtgttcatagagtatttaatttattttcagatgtt 40  Q
    |||||||| ||||||||||||||||||||||||||||||    
T  16729888 tttggtgtacatagagtatttaatttattttcagatgtt 16729926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 12 - 44
Target Start/End: Original strand, 40971595 - 40971627
Alignment:
Q  12 atagagtatttaatttattttcagatgttgtct 44  Q
    |||||||||||||||||||||||||||||||||    
T  40971595 atagagtatttaatttattttcagatgttgtct 40971627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 44
Target Start/End: Original strand, 1981755 - 1981797
Alignment:
Q  2 tttggtgttcatagagtatttaatttattttcagatgttgtct 44  Q
    ||||||||  ||||| |||||||||||||||||||||||||||    
T  1981755 tttggtgtgtatagaatatttaatttattttcagatgttgtct 1981797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 44
Target Start/End: Original strand, 31597681 - 31597723
Alignment:
Q  2 tttggtgttcatagagtatttaatttattttcagatgttgtct 44  Q
    ||||||||  ||||| |||||||||||||||||||||||||||    
T  31597681 tttggtgtatatagaatatttaatttattttcagatgttgtct 31597723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 44
Target Start/End: Original strand, 45117625 - 45117667
Alignment:
Q  2 tttggtgttcatagagtatttaatttattttcagatgttgtct 44  Q
    ||||||||  ||||| |||||||||||||||||||||||||||    
T  45117625 tttggtgtatatagaatatttaatttattttcagatgttgtct 45117667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 152 - 201
Target Start/End: Original strand, 35824427 - 35824476
Alignment:
Q  152 ttttttcatattatgcctaagacctataaaactctaggaacgaccatgac 201  Q
    |||| ||||||||||||| |||||  ||||||||||||||||||| ||||    
T  35824427 ttttctcatattatgccttagacccctaaaactctaggaacgaccctgac 35824476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 133 - 193
Target Start/End: Original strand, 40971715 - 40971776
Alignment:
Q  133 atgtattatgtaaggaacc-ttttttcatattatgcctaagacctataaaactctaggaacg 193  Q
    ||||||||||||||| ||| ||||||||||||||||||||| ||  |||||  |||||||||    
T  40971715 atgtattatgtaagggacccttttttcatattatgcctaaggcccgtaaaatgctaggaacg 40971776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 152 - 193
Target Start/End: Original strand, 45117764 - 45117805
Alignment:
Q  152 ttttttcatattatgcctaagacctataaaactctaggaacg 193  Q
    ||||||||||||||||||||| ||  ||||||||||||||||    
T  45117764 ttttttcatattatgcctaaggcccgtaaaactctaggaacg 45117805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 129 - 193
Target Start/End: Complemental strand, 9381659 - 9381595
Alignment:
Q  129 tatgatgtattatgtaaggaaccttttttcatattatgcctaagacctataaaactctaggaacg 193  Q
    |||||||||||||||| ||  | |||| ||||||||||||||||| |  ||||||||||| ||||    
T  9381659 tatgatgtattatgtaggggtcattttctcatattatgcctaagatccttaaaactctagaaacg 9381595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 129 - 196
Target Start/End: Complemental strand, 11647929 - 11647861
Alignment:
Q  129 tatgatgtattatgtaaggaac-cttttttcatattatgcctaagacctataaaactctaggaacgacc 196  Q
    ||||||||||||||| |||  | ||||| |||||||||| |||||  || |||||||||||||||||||    
T  11647929 tatgatgtattatgttaggggctcttttctcatattatgtctaaggtctgtaaaactctaggaacgacc 11647861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 192
Target Start/End: Complemental strand, 23231792 - 23231752
Alignment:
Q  152 ttttttcatattatgcctaagacctataaaactctaggaac 192  Q
    |||| |||||||||| ||||||||| |||||||||||||||    
T  23231792 ttttctcatattatgtctaagacctgtaaaactctaggaac 23231752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 49; Significance: 4e-19; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 129 - 193
Target Start/End: Complemental strand, 9409380 - 9409316
Alignment:
Q  129 tatgatgtattatgtaaggaaccttttttcatattatgcctaagacctataaaactctaggaacg 193  Q
    |||||| |||||||||| || |||||||||||||||||||||||||| |||||||||||||||||    
T  9409380 tatgatctattatgtaatgacccttttttcatattatgcctaagacccataaaactctaggaacg 9409316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 129 - 193
Target Start/End: Original strand, 23963135 - 23963199
Alignment:
Q  129 tatgatgtattatgtaaggaaccttttttcatattatgcctaagacctataaaactctaggaacg 193  Q
    ||||||| |||||||||||  ||||||||||||||||||||||| ||||||||||||||||||||    
T  23963135 tatgatgcattatgtaagggcccttttttcatattatgcctaaggcctataaaactctaggaacg 23963199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 129 - 193
Target Start/End: Complemental strand, 5578427 - 5578363
Alignment:
Q  129 tatgatgtattatgtaaggaaccttttttcatattatgcctaagacctataaaactctaggaacg 193  Q
    ||||||||||||||||||| || |||||||||||||||| |||| ||  ||||||||||||||||    
T  5578427 tatgatgtattatgtaagggactttttttcatattatgcttaaggcccgtaaaactctaggaacg 5578363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 137 - 193
Target Start/End: Complemental strand, 13382410 - 13382354
Alignment:
Q  137 attatgtaaggaaccttttttcatattatgcctaagacctataaaactctaggaacg 193  Q
    |||||||||||  ||||||||||||||||||||||| ||| ||||||||||||||||    
T  13382410 attatgtaagggcccttttttcatattatgcctaaggcctgtaaaactctaggaacg 13382354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 129 - 193
Target Start/End: Original strand, 42879879 - 42879943
Alignment:
Q  129 tatgatgtattatgtaaggaaccttttttcatattatgcctaagacctataaaactctaggaacg 193  Q
    |||||| ||||||||||||  ||||||||||||||||||||||| ||  ||||||||||||||||    
T  42879879 tatgatctattatgtaagggcccttttttcatattatgcctaaggcccgtaaaactctaggaacg 42879943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 2 - 44
Target Start/End: Complemental strand, 5578554 - 5578512
Alignment:
Q  2 tttggtgttcatagagtatttaatttattttcagatgttgtct 44  Q
    |||||||| ||||||||||||||||||||||||||||||||||    
T  5578554 tttggtgtacatagagtatttaatttattttcagatgttgtct 5578512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 129 - 193
Target Start/End: Original strand, 2677252 - 2677316
Alignment:
Q  129 tatgatgtattatgtaaggaaccttttttcatattatgcctaagacctataaaactctaggaacg 193  Q
    ||||||| |||||||||||  |||||||| |||||||||||||| ||  ||||||||||||||||    
T  2677252 tatgatgcattatgtaagggccctttttttatattatgcctaaggcccgtaaaactctaggaacg 2677316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 133 - 193
Target Start/End: Original strand, 13490669 - 13490729
Alignment:
Q  133 atgtattatgtaaggaaccttttttcatattatgcctaagacctataaaactctaggaacg 193  Q
    ||||||||||||| |  ||||||||||||||||||||||| ||| ||||||||||| ||||    
T  13490669 atgtattatgtaatggcccttttttcatattatgcctaaggcctgtaaaactctagaaacg 13490729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 2 - 44
Target Start/End: Original strand, 13490548 - 13490590
Alignment:
Q  2 tttggtgttcatagagtatttaatttattttcagatgttgtct 44  Q
    ||||||||  |||||||||||||||||||||||||||||||||    
T  13490548 tttggtgtatatagagtatttaatttattttcagatgttgtct 13490590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 129 - 193
Target Start/End: Complemental strand, 6769172 - 6769107
Alignment:
Q  129 tatgatgtattatgtaagga-accttttttcatattatgcctaagacctataaaactctaggaacg 193  Q
    ||||||||||||| |||||  ||||||| ||||||||||| |||| ||| ||||||||||||||||    
T  6769172 tatgatgtattatctaaggggaccttttctcatattatgcttaaggcctgtaaaactctaggaacg 6769107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 144 - 193
Target Start/End: Original strand, 41871403 - 41871452
Alignment:
Q  144 aaggaaccttttttcatattatgcctaagacctataaaactctaggaacg 193  Q
    ||||| |||||||||||| |||||||||| ||| ||||||||||||||||    
T  41871403 aaggacccttttttcatactatgcctaaggcctgtaaaactctaggaacg 41871452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 129 - 193
Target Start/End: Original strand, 18889351 - 18889414
Alignment:
Q  129 tatgatgtattatgtaaggaaccttttttcatattatgcctaagacctataaaactctaggaacg 193  Q
    ||||||| |||||||||||  |||||| |||||||| ||||||| || |||||||||||||||||    
T  18889351 tatgatgcattatgtaagggccctttt-tcatattacgcctaaggccgataaaactctaggaacg 18889414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 129 - 193
Target Start/End: Complemental strand, 39537233 - 39537170
Alignment:
Q  129 tatgatgtattatgtaaggaaccttttttcatattatgcctaagacctataaaactctaggaacg 193  Q
    |||||||||||||||||||  ||||||| |||||||||| |||| |||  |||||||||||||||    
T  39537233 tatgatgtattatgtaagggcccttttt-catattatgcataaggcctgcaaaactctaggaacg 39537170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 44
Target Start/End: Complemental strand, 13382545 - 13382503
Alignment:
Q  2 tttggtgttcatagagtatttaatttattttcagatgttgtct 44  Q
    ||||||||  ||||| |||||||||||||||||||||||||||    
T  13382545 tttggtgtatatagaatatttaatttattttcagatgttgtct 13382503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 44
Target Start/End: Original strand, 23963009 - 23963051
Alignment:
Q  2 tttggtgttcatagagtatttaatttattttcagatgttgtct 44  Q
    ||||||||  ||||| |||||||||||||||||||||||||||    
T  23963009 tttggtgtatatagaatatttaatttattttcagatgttgtct 23963051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 129 - 193
Target Start/End: Complemental strand, 43170843 - 43170778
Alignment:
Q  129 tatgatgtattatgtaaggaacc-ttttttcatattatgcctaagacctataaaactctaggaacg 193  Q
    |||||||||||||||||||  || ||||||||||||||| | | ||||  ||||||||||||||||    
T  43170843 tatgatgtattatgtaaggggccattttttcatattatgtccatgacccctaaaactctaggaacg 43170778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 129 - 196
Target Start/End: Complemental strand, 8805842 - 8805775
Alignment:
Q  129 tatgatgtattatgtaaggaaccttttt-tcatattatgcctaagacctataaaactctaggaacgacc 196  Q
    |||||||||||||||||||  ||||||| || |||| |||||||  ||| |||||||||||||||||||    
T  8805842 tatgatgtattatgtaaggtgcctttttctcgtatt-tgcctaaagcctgtaaaactctaggaacgacc 8805775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 40
Target Start/End: Complemental strand, 9409496 - 9409468
Alignment:
Q  12 atagagtatttaatttattttcagatgtt 40  Q
    |||||||||||||||||||||||||||||    
T  9409496 atagagtatttaatttattttcagatgtt 9409468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 49; Significance: 4e-19; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 129 - 193
Target Start/End: Original strand, 7444196 - 7444260
Alignment:
Q  129 tatgatgtattatgtaaggaaccttttttcatattatgcctaagacctataaaactctaggaacg 193  Q
    |||||||||||||||||||  ||||||||||||||||||||||||||  ||||||||||||||||    
T  7444196 tatgatgtattatgtaagggcccttttttcatattatgcctaagacccgtaaaactctaggaacg 7444260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 129 - 193
Target Start/End: Original strand, 19686078 - 19686142
Alignment:
Q  129 tatgatgtattatgtaaggaaccttttttcatattatgcctaagacctataaaactctaggaacg 193  Q
    ||||||| |||||||||||  ||||||||||||||||||||||| ||  ||||||||||||||||    
T  19686078 tatgatgcattatgtaagggcccttttttcatattatgcctaaggcccgtaaaactctaggaacg 19686142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 129 - 193
Target Start/End: Complemental strand, 22575802 - 22575738
Alignment:
Q  129 tatgatgtattatgtaaggaaccttttttcatattatgcctaagacctataaaactctaggaacg 193  Q
    |||||| ||||||||||||  ||||||||||||||||||||||| ||  ||||||||||||||||    
T  22575802 tatgatctattatgtaagggcccttttttcatattatgcctaaggcccgtaaaactctaggaacg 22575738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 129 - 196
Target Start/End: Original strand, 25622105 - 25622173
Alignment:
Q  129 tatgatgtattatgtaagga-accttttttcatattatgcctaagacctataaaactctaggaacgacc 196  Q
    |||||||||||||||||||| || |||| ||||||||||| |||||||  |||||||||||||||||||    
T  25622105 tatgatgtattatgtaaggagacattttctcatattatgcttaagacccctaaaactctaggaacgacc 25622173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 129 - 193
Target Start/End: Complemental strand, 27861656 - 27861592
Alignment:
Q  129 tatgatgtattatgtaaggaaccttttttcatattatgcctaagacctataaaactctaggaacg 193  Q
    ||||||||||| |||||||  ||||||||||||||||||||||| ||  ||||||||||||||||    
T  27861656 tatgatgtattttgtaagggcccttttttcatattatgcctaaggcccgtaaaactctaggaacg 27861592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 129 - 193
Target Start/End: Complemental strand, 33015011 - 33014947
Alignment:
Q  129 tatgatgtattatgtaaggaaccttttttcatattatgcctaagacctataaaactctaggaacg 193  Q
    ||||||| |||||||||||  |||||||||||||||||| |||||||  ||||||||||||||||    
T  33015011 tatgatgcattatgtaagggcccttttttcatattatgcataagacccgtaaaactctaggaacg 33014947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 2 - 44
Target Start/End: Original strand, 7444080 - 7444122
Alignment:
Q  2 tttggtgttcatagagtatttaatttattttcagatgttgtct 44  Q
    ||||||||  |||||||||||||||||||||||||||||||||    
T  7444080 tttggtgtatatagagtatttaatttattttcagatgttgtct 7444122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 12 - 44
Target Start/End: Complemental strand, 27861762 - 27861730
Alignment:
Q  12 atagagtatttaatttattttcagatgttgtct 44  Q
    |||||||||||||||||||||||||||||||||    
T  27861762 atagagtatttaatttattttcagatgttgtct 27861730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 150 - 193
Target Start/End: Complemental strand, 18581011 - 18580968
Alignment:
Q  150 ccttttttcatattatgcctaagacctataaaactctaggaacg 193  Q
    |||||||||||| |||||||||| ||| ||||||||||||||||    
T  18581011 ccttttttcatactatgcctaaggcctgtaaaactctaggaacg 18580968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 150 - 193
Target Start/End: Original strand, 38698798 - 38698841
Alignment:
Q  150 ccttttttcatattatgcctaagacctataaaactctaggaacg 193  Q
    |||||||||||| |||||||||| ||| ||||||||||||||||    
T  38698798 ccttttttcatactatgcctaaggcctgtaaaactctaggaacg 38698841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 44
Target Start/End: Original strand, 2554214 - 2554256
Alignment:
Q  2 tttggtgttcatagagtatttaatttattttcagatgttgtct 44  Q
    ||||||||  ||||| |||||||||||||||||||||||||||    
T  2554214 tttggtgtatatagaatatttaatttattttcagatgttgtct 2554256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 129 - 198
Target Start/End: Original strand, 14904695 - 14904765
Alignment:
Q  129 tatgatgtattatgtaaggaaccttttt-tcatattatgcctaagacctataaaactctaggaacgaccat 198  Q
    |||||||||||||||||||  | ||||| ||||||||||| |||| ||  ||||||||||||||| |||||    
T  14904695 tatgatgtattatgtaaggggcttttttctcatattatgcttaaggcccctaaaactctaggaacaaccat 14904765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 44
Target Start/End: Complemental strand, 41825910 - 41825868
Alignment:
Q  2 tttggtgttcatagagtatttaatttattttcagatgttgtct 44  Q
    ||||||||  ||||| |||||||||||||||||||||||||||    
T  41825910 tttggtgtatatagaatatttaatttattttcagatgttgtct 41825868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 44
Target Start/End: Complemental strand, 44322167 - 44322125
Alignment:
Q  2 tttggtgttcatagagtatttaatttattttcagatgttgtct 44  Q
    ||||||||  ||||| |||||||||||||||||||||||||||    
T  44322167 tttggtgtatatagaatatttaatttattttcagatgttgtct 44322125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 133 - 193
Target Start/End: Complemental strand, 31548675 - 31548614
Alignment:
Q  133 atgtattatgtaaggaaccttttt-tcatattatgcctaagacctataaaactctaggaacg 193  Q
    ||||||||||||||| ||| |||| |||||||| | ||||||||| ||||||||||| ||||    
T  31548675 atgtattatgtaagggacccttttctcatattaagtctaagacctgtaaaactctagaaacg 31548614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 151 - 196
Target Start/End: Complemental strand, 38565868 - 38565823
Alignment:
Q  151 cttttttcatattatgcctaagacctataaaactctaggaacgacc 196  Q
    ||||| |||||||||||||||||||  |||||||||||||| ||||    
T  38565868 cttttctcatattatgcctaagacccgtaaaactctaggaatgacc 38565823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 196
Target Start/End: Original strand, 30387378 - 30387422
Alignment:
Q  152 ttttttcatattatgcctaagacctataaaactctaggaacgacc 196  Q
    |||| |||||||||||||||||||   ||||||||||||||||||    
T  30387378 ttttctcatattatgcctaagacccgaaaaactctaggaacgacc 30387422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 129 - 193
Target Start/End: Complemental strand, 44313861 - 44313797
Alignment:
Q  129 tatgatgtattatgtaaggaaccttttttcatattatgcctaagacctataaaactctaggaacg 193  Q
    ||||||| ||||| ||| || |||||||| |||||||| ||||| ||  ||||||||||||||||    
T  44313861 tatgatgcattatataaagaccctttttttatattatgtctaaggcccgtaaaactctaggaacg 44313797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 48; Significance: 1e-18; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 133 - 196
Target Start/End: Complemental strand, 33100246 - 33100183
Alignment:
Q  133 atgtattatgtaaggaaccttttttcatattatgcctaagacctataaaactctaggaacgacc 196  Q
    |||||||||||||||  |||||| |||||||||||||||||||| |||||||||||||||||||    
T  33100246 atgtattatgtaaggccccttttctcatattatgcctaagacctgtaaaactctaggaacgacc 33100183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 129 - 193
Target Start/End: Original strand, 25071928 - 25071991
Alignment:
Q  129 tatgatgtattatgtaaggaaccttttttcatattatgcctaagacctataaaactctaggaacg 193  Q
    ||||||| |||||||||||| ||||||||||||||||||||||| ||  ||||||||||||||||    
T  25071928 tatgatgcattatgtaagga-ccttttttcatattatgcctaaggcccgtaaaactctaggaacg 25071991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 129 - 193
Target Start/End: Complemental strand, 10993980 - 10993916
Alignment:
Q  129 tatgatgtattatgtaaggaaccttttttcatattatgcctaagacctataaaactctaggaacg 193  Q
    ||||||| |||||||||||  | ||||||||||||||||||||| ||  ||||||||||||||||    
T  10993980 tatgatgcattatgtaagggccattttttcatattatgcctaaggcccgtaaaactctaggaacg 10993916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 129 - 193
Target Start/End: Original strand, 15761144 - 15761208
Alignment:
Q  129 tatgatgtattatgtaaggaaccttttttcatattatgcctaagacctataaaactctaggaacg 193  Q
    ||||||| |||||||||||  |||||||||||||||||| ||||  || ||||||||||||||||    
T  15761144 tatgatgcattatgtaagggcccttttttcatattatgcttaaggtctgtaaaactctaggaacg 15761208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 150 - 193
Target Start/End: Complemental strand, 1418256 - 1418213
Alignment:
Q  150 ccttttttcatattatgcctaagacctataaaactctaggaacg 193  Q
    ||||||||||||||||||||||| ||| ||||||||||||||||    
T  1418256 ccttttttcatattatgcctaaggcctgtaaaactctaggaacg 1418213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 129 - 192
Target Start/End: Original strand, 40145762 - 40145824
Alignment:
Q  129 tatgatgtattatgtaaggaaccttttttcatattatgcctaagacctataaaactctaggaac 192  Q
    |||||||||||||||| ||  | |||| |||||||||||||||||||| |||||||||||||||    
T  40145762 tatgatgtattatgtagggc-cattttctcatattatgcctaagacctgtaaaactctaggaac 40145824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 150 - 193
Target Start/End: Original strand, 1425064 - 1425107
Alignment:
Q  150 ccttttttcatattatgcctaagacctataaaactctaggaacg 193  Q
    ||||| ||||||| ||||||||| ||||||||||||||||||||    
T  1425064 cctttattcatatcatgcctaaggcctataaaactctaggaacg 1425107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 150 - 193
Target Start/End: Original strand, 22918438 - 22918481
Alignment:
Q  150 ccttttttcatattatgcctaagacctataaaactctaggaacg 193  Q
    |||||||||||| |||||||||| ||| ||||||||||||||||    
T  22918438 ccttttttcatactatgcctaaggcctgtaaaactctaggaacg 22918481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 150 - 193
Target Start/End: Complemental strand, 27941313 - 27941270
Alignment:
Q  150 ccttttttcatattatgcctaagacctataaaactctaggaacg 193  Q
    ||||||||||||||||||||||| ||  ||||||||||||||||    
T  27941313 ccttttttcatattatgcctaaggcccgtaaaactctaggaacg 27941270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 150 - 193
Target Start/End: Original strand, 30378911 - 30378954
Alignment:
Q  150 ccttttttcatattatgcctaagacctataaaactctaggaacg 193  Q
    |||||||||||| |||||||||| ||| ||||||||||||||||    
T  30378911 ccttttttcatactatgcctaaggcctgtaaaactctaggaacg 30378954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 44
Target Start/End: Complemental strand, 10994094 - 10994052
Alignment:
Q  2 tttggtgttcatagagtatttaatttattttcagatgttgtct 44  Q
    ||||||||  ||||| |||||||||||||||||||||||||||    
T  10994094 tttggtgtatatagaatatttaatttattttcagatgttgtct 10994052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 40
Target Start/End: Original strand, 52448301 - 52448339
Alignment:
Q  2 tttggtgttcatagagtatttaatttattttcagatgtt 40  Q
    ||||||||  |||||||||||||||||||||||||||||    
T  52448301 tttggtgtatatagagtatttaatttattttcagatgtt 52448339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 44
Target Start/End: Complemental strand, 53076913 - 53076871
Alignment:
Q  2 tttggtgttcatagagtatttaatttattttcagatgttgtct 44  Q
    ||||||||  ||||| |||||||||||||||||||||||||||    
T  53076913 tttggtgtatatagaatatttaatttattttcagatgttgtct 53076871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 196
Target Start/End: Original strand, 17147407 - 17147447
Alignment:
Q  156 ttcatattatgcctaagacctataaaactctaggaacgacc 196  Q
    |||||||| ||||||| || |||||||||||||||||||||    
T  17147407 ttcatattttgcctaaaacatataaaactctaggaacgacc 17147447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 129 - 193
Target Start/End: Original strand, 19157379 - 19157443
Alignment:
Q  129 tatgatgtattatgtaaggaaccttttttcatattatgcctaagacctataaaactctaggaacg 193  Q
    ||||||| |||||||||||  |||||||||||||||| | |||| ||  || |||||||||||||    
T  19157379 tatgatgcattatgtaagggcccttttttcatattatacttaaggcccgtagaactctaggaacg 19157443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 198
Target Start/End: Complemental strand, 30190325 - 30190261
Alignment:
Q  135 gtattatgtaaggaacctttt-ttcatattatgcctaagacctataaaactctaggaacgaccat 198  Q
    ||||||| ||||| ||||||| |||||||||| | |||| |||| ||||||||||||||| ||||    
T  30190325 gtattatataagggaccttttattcatattatacttaaggcctaaaaaactctaggaacggccat 30190261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 46; Significance: 2e-17; HSPs: 27)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 151 - 200
Target Start/End: Complemental strand, 47396895 - 47396846
Alignment:
Q  151 cttttttcatattatgcctaagacctataaaactctaggaacgaccatga 200  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  47396895 cttttctcatattatgcctaagacctataaaactctaggaacgaccatga 47396846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 129 - 196
Target Start/End: Original strand, 25095454 - 25095521
Alignment:
Q  129 tatgatgtattatgtaaggaaccttttttcatattatgcctaagacctataaaactctaggaacgacc 196  Q
    ||||||||||||||| ||| ||||| |||||||||||||||||| ||  |||||||||||||||||||    
T  25095454 tatgatgtattatgttagggaccttctttcatattatgcctaaggcccgtaaaactctaggaacgacc 25095521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 129 - 191
Target Start/End: Complemental strand, 17967142 - 17967080
Alignment:
Q  129 tatgatgtattatgtaaggaaccttttttcatattatgcctaagacctataaaactctaggaa 191  Q
    ||||||| |||||||||||| ||||||||||||||||||||||| ||  ||||||||||||||    
T  17967142 tatgatgcattatgtaaggatccttttttcatattatgcctaaggcccgtaaaactctaggaa 17967080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 129 - 193
Target Start/End: Complemental strand, 8737719 - 8737655
Alignment:
Q  129 tatgatgtattatgtaaggaaccttttttcatattatgcctaagacctataaaactctaggaacg 193  Q
    |||||||||||||||||||  ||||||||||||||||||||||| ||  ||||||||||| ||||    
T  8737719 tatgatgtattatgtaagggcccttttttcatattatgcctaaggcccgtaaaactctagaaacg 8737655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 129 - 193
Target Start/End: Original strand, 21906665 - 21906729
Alignment:
Q  129 tatgatgtattatgtaaggaaccttttttcatattatgcctaagacctataaaactctaggaacg 193  Q
    ||||||| |||||||||||  ||||||||||||||||||||||| || |||||| ||||||||||    
T  21906665 tatgatgcattatgtaagggcccttttttcatattatgcctaaggcccataaaattctaggaacg 21906729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 129 - 193
Target Start/End: Complemental strand, 23663927 - 23663863
Alignment:
Q  129 tatgatgtattatgtaaggaaccttttttcatattatgcctaagacctataaaactctaggaacg 193  Q
    |||||||||||||||  || |||||||||||||||||||||||| ||  ||||||||||||||||    
T  23663927 tatgatgtattatgttggggaccttttttcatattatgcctaaggcccgtaaaactctaggaacg 23663863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 129 - 193
Target Start/End: Original strand, 48999688 - 48999752
Alignment:
Q  129 tatgatgtattatgtaaggaaccttttttcatattatgcctaagacctataaaactctaggaacg 193  Q
    ||||||| |||||||||||  ||||||||||||||||||||||| ||  ||||||||||||||||    
T  48999688 tatgatgcattatgtaagggcccttttttcatattatgcctaaggcccgtaaaactctaggaacg 48999752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 2 - 44
Target Start/End: Complemental strand, 23664053 - 23664011
Alignment:
Q  2 tttggtgttcatagagtatttaatttattttcagatgttgtct 44  Q
    |||||||| ||||||||||||||||||||||||||||||||||    
T  23664053 tttggtgtacatagagtatttaatttattttcagatgttgtct 23664011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 152 - 193
Target Start/End: Complemental strand, 27430592 - 27430551
Alignment:
Q  152 ttttttcatattatgcctaagacctataaaactctaggaacg 193  Q
    ||||||||||||||||||||| ||| ||||||||||||||||    
T  27430592 ttttttcatattatgcctaaggcctgtaaaactctaggaacg 27430551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 129 - 193
Target Start/End: Original strand, 44310934 - 44310998
Alignment:
Q  129 tatgatgtattatgtaaggaaccttttttcatattatgcctaagacctataaaactctaggaacg 193  Q
    |||||||||||||||||||| |||||| ||| ||||||| |||||||  ||||| |||| |||||    
T  44310934 tatgatgtattatgtaaggatccttttctcaaattatgcttaagacccgtaaaattctaagaacg 44310998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 44
Target Start/End: Original strand, 25095339 - 25095369
Alignment:
Q  14 agagtatttaatttattttcagatgttgtct 44  Q
    |||||||||||||||||||||||||||||||    
T  25095339 agagtatttaatttattttcagatgttgtct 25095369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 44
Target Start/End: Original strand, 26465236 - 26465278
Alignment:
Q  2 tttggtgttcatagagtatttaatttattttcagatgttgtct 44  Q
    ||||||||  ||||| |||||||||||||||||||||||||||    
T  26465236 tttggtgtatatagaatatttaatttattttcagatgttgtct 26465278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 44
Target Start/End: Complemental strand, 27430743 - 27430701
Alignment:
Q  2 tttggtgttcatagagtatttaatttattttcagatgttgtct 44  Q
    ||||||||  ||||| |||||||||||||||||||||||||||    
T  27430743 tttggtgtatatagaatatttaatttattttcagatgttgtct 27430701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 44
Target Start/End: Complemental strand, 34307391 - 34307349
Alignment:
Q  2 tttggtgttcatagagtatttaatttattttcagatgttgtct 44  Q
    ||||||||  ||||| |||||||||||||||||||||||||||    
T  34307391 tttggtgtatatagaatatttaatttattttcagatgttgtct 34307349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 44
Target Start/End: Original strand, 44310806 - 44310848
Alignment:
Q  2 tttggtgttcatagagtatttaatttattttcagatgttgtct 44  Q
    ||||||||  ||||||||||| |||||||||||||||||||||    
T  44310806 tttggtgtgtatagagtatttgatttattttcagatgttgtct 44310848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 44
Target Start/End: Complemental strand, 48596297 - 48596255
Alignment:
Q  2 tttggtgttcatagagtatttaatttattttcagatgttgtct 44  Q
    ||||||||  ||||| |||||||||||||||||||||||||||    
T  48596297 tttggtgtgtatagaatatttaatttattttcagatgttgtct 48596255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 150 - 199
Target Start/End: Complemental strand, 1345839 - 1345790
Alignment:
Q  150 ccttttttcatattatgcctaagacctataaaactctaggaacgaccatg 199  Q
    |||||||||||| |||||||||| ||| ||||||| |||||||| |||||    
T  1345839 ccttttttcatactatgcctaaggcctgtaaaactttaggaacggccatg 1345790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 152 - 193
Target Start/End: Original strand, 26465374 - 26465415
Alignment:
Q  152 ttttttcatattatgcctaagacctataaaactctaggaacg 193  Q
    ||||||||||||||||||||| ||  ||||||||||||||||    
T  26465374 ttttttcatattatgcctaaggcccgtaaaactctaggaacg 26465415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 129 - 190
Target Start/End: Complemental strand, 48596168 - 48596107
Alignment:
Q  129 tatgatgtattatgtaaggaaccttttttcatattatgcctaagacctataaaactctagga 190  Q
    ||||||| ||||| |||||  |||||||  |||||||||||||||||  |||||||||||||    
T  48596168 tatgatgcattatataagggccctttttctatattatgcctaagacccgtaaaactctagga 48596107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 129 - 193
Target Start/End: Original strand, 5049740 - 5049804
Alignment:
Q  129 tatgatgtattatgtaaggaaccttttttcatattatgcctaagacctataaaactctaggaacg 193  Q
    ||||||| ||||| |||||  | ||||||||||||||||||| | ||  ||||||||||||||||    
T  5049740 tatgatgcattatataagggcctttttttcatattatgcctagggcccgtaaaactctaggaacg 5049804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 44
Target Start/End: Complemental strand, 8737825 - 8737793
Alignment:
Q  12 atagagtatttaatttattttcagatgttgtct 44  Q
    ||||||||||||||||||||||||| |||||||    
T  8737825 atagagtatttaatttattttcagaagttgtct 8737793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 42
Target Start/End: Original strand, 9023582 - 9023622
Alignment:
Q  2 tttggtgttcatagagtatttaatttattttcagatgttgt 42  Q
    ||||||||  |||||||||||||||||| ||||||||||||    
T  9023582 tttggtgtctatagagtatttaatttatattcagatgttgt 9023622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 129 - 193
Target Start/End: Original strand, 9023714 - 9023778
Alignment:
Q  129 tatgatgtattatgtaaggaaccttttttcatattatgcctaagacctataaaactctaggaacg 193  Q
    |||||||||||||||||||   | ||| ||||||||||||||||  |  ||||||||||||||||    
T  9023714 tatgatgtattatgtaaggggtcctttctcatattatgcctaaggtccgtaaaactctaggaacg 9023778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 44
Target Start/End: Complemental strand, 17967259 - 17967227
Alignment:
Q  12 atagagtatttaatttattttcagatgttgtct 44  Q
    ||||| |||||||||||||||||||||||||||    
T  17967259 atagaatatttaatttattttcagatgttgtct 17967227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 129 - 193
Target Start/End: Original strand, 22070788 - 22070851
Alignment:
Q  129 tatgatgtattatgtaaggaaccttttttcatattatgcctaagacctataaaactctaggaacg 193  Q
    ||||||| |||||||||||  ||||||| ||||| ||||||||| ||  ||||||||||||||||    
T  22070788 tatgatgcattatgtaagggcccttttt-catataatgcctaaggcccgtaaaactctaggaacg 22070851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 153 - 193
Target Start/End: Complemental strand, 33048733 - 33048693
Alignment:
Q  153 tttttcatattatgcctaagacctataaaactctaggaacg 193  Q
    ||||||||| |||||||||||||  ||||||||||||||||    
T  33048733 tttttcatactatgcctaagacccgtaaaactctaggaacg 33048693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 137 - 193
Target Start/End: Complemental strand, 34307054 - 34306998
Alignment:
Q  137 attatgtaaggaaccttttttcatattatgcctaagacctataaaactctaggaacg 193  Q
    |||||||||||  | |||||||||||| |||||||| ||| ||||||||||| ||||    
T  34307054 attatgtaagggcctttttttcatattgtgcctaaggcctgtaaaactctagaaacg 34306998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 45; Significance: 9e-17; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 129 - 193
Target Start/End: Complemental strand, 31072342 - 31072278
Alignment:
Q  129 tatgatgtattatgtaaggaaccttttttcatattatgcctaagacctataaaactctaggaacg 193  Q
    ||||||| |||||||||||  ||||||||||||||||||||||| || |||||||||||||||||    
T  31072342 tatgatgcattatgtaagggcccttttttcatattatgcctaaggcccataaaactctaggaacg 31072278  T

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Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 129 - 193
Target Start/End: Complemental strand, 8389113 - 8389049
Alignment:
Q  129 tatgatgtattatgtaaggaaccttttttcatattatgcctaagacctataaaactctaggaacg 193  Q
    ||||||| |||||||||||  ||||||||||||||||||||||| ||  ||||||||||||||||    
T  8389113 tatgatgcattatgtaagggcccttttttcatattatgcctaaggcccgtaaaactctaggaacg 8389049  T

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Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 129 - 193
Target Start/End: Original strand, 23305932 - 23305996
Alignment:
Q  129 tatgatgtattatgtaaggaaccttttttcatattatgcctaagacctataaaactctaggaacg 193  Q
    |||||| ||||||||||||| |||||||||| | |||||||||||||  |||||| |||||||||    
T  23305932 tatgatatattatgtaaggacccttttttcaaactatgcctaagacccttaaaacgctaggaacg 23305996  T

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Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 2 - 44
Target Start/End: Complemental strand, 20394731 - 20394689
Alignment:
Q  2 tttggtgttcatagagtatttaatttattttcagatgttgtct 44  Q
    |||||||| |||| |||||||||||||||||||||||||||||    
T  20394731 tttggtgtacataaagtatttaatttattttcagatgttgtct 20394689  T

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Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 129 - 193
Target Start/End: Original strand, 1623817 - 1623881
Alignment:
Q  129 tatgatgtattatgtaaggaaccttttttcatattatgcctaagacctataaaactctaggaacg 193  Q
    ||||||| ||||||||| |  |||||||||||||||||||||||  |  ||||||||||||||||    
T  1623817 tatgatgcattatgtaaaggcccttttttcatattatgcctaaggtccgtaaaactctaggaacg 1623881  T

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Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 129 - 193
Target Start/End: Complemental strand, 20394604 - 20394540
Alignment:
Q  129 tatgatgtattatgtaaggaaccttttttcatattatgcctaagacctataaaactctaggaacg 193  Q
    ||||||||||||||||||| ||||||||| ||||||||| |||| ||  ||||||| || |||||    
T  20394604 tatgatgtattatgtaagggacctttttttatattatgcataaggcccgtaaaactttaagaacg 20394540  T

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Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 150 - 193
Target Start/End: Complemental strand, 15678561 - 15678518
Alignment:
Q  150 ccttttttcatattatgcctaagacctataaaactctaggaacg 193  Q
    |||||||||||| |||||||||||||  ||||||||||||||||    
T  15678561 ccttttttcatactatgcctaagacccgtaaaactctaggaacg 15678518  T

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Target: scaffold0093 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: scaffold0093
Description:

Target: scaffold0093; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 129 - 193
Target Start/End: Original strand, 51133 - 51197
Alignment:
Q  129 tatgatgtattatgtaaggaaccttttttcatattatgcctaagacctataaaactctaggaacg 193  Q
    ||||||| |||||||||||  ||||||||||||||||||||||| ||  ||||||||||||||||    
T  51133 tatgatgcattatgtaagggcccttttttcatattatgcctaaggcccgtaaaactctaggaacg 51197  T

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Target: scaffold0093; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 44
Target Start/End: Original strand, 51016 - 51048
Alignment:
Q  12 atagagtatttaatttattttcagatgttgtct 44  Q
    ||||| |||||||||||||||||||||||||||    
T  51016 atagaatatttaatttattttcagatgttgtct 51048  T

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Target: chr6 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 129 - 193
Target Start/End: Original strand, 21442868 - 21442932
Alignment:
Q  129 tatgatgtattatgtaaggaaccttttttcatattatgcctaagacctataaaactctaggaacg 193  Q
    ||||||| ||||| |||||  |||||||||||||||||||||||||  |||||||||||||||||    
T  21442868 tatgatgcattatataagggtccttttttcatattatgcctaagactcataaaactctaggaacg 21442932  T

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Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 129 - 193
Target Start/End: Original strand, 1603657 - 1603721
Alignment:
Q  129 tatgatgtattatgtaaggaaccttttttcatattatgcctaagacctataaaactctaggaacg 193  Q
    ||||||| |||||||||||  |||||||| |||||||||||||| ||  ||||||||||||||||    
T  1603657 tatgatgcattatgtaagggccctttttttatattatgcctaaggcccgtaaaactctaggaacg 1603721  T

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Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 129 - 193
Target Start/End: Original strand, 18675639 - 18675702
Alignment:
Q  129 tatgatgtattatgtaaggaaccttttttcatattatgcctaagacctataaaactctaggaacg 193  Q
    |||||||||||||||||||  |||||| ||||||||||| |||| || |||||||||||||||||    
T  18675639 tatgatgtattatgtaagggccctttt-tcatattatgcttaaggcccataaaactctaggaacg 18675702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 129 - 193
Target Start/End: Original strand, 34043830 - 34043894
Alignment:
Q  129 tatgatgtattatgtaaggaaccttttttcatattatgcctaagacctataaaactctaggaacg 193  Q
    ||||||| |||||||||||  |||||||||||||||||| |||| ||  ||||||||||||||||    
T  34043830 tatgatgcattatgtaagggcccttttttcatattatgcgtaaggcccgtaaaactctaggaacg 34043894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 2 - 44
Target Start/End: Original strand, 1423113 - 1423155
Alignment:
Q  2 tttggtgttcatagagtatttaatttattttcagatgttgtct 44  Q
    ||||||||  |||||||||||||||||||||||||||||||||    
T  1423113 tttggtgtatatagagtatttaatttattttcagatgttgtct 1423155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 2 - 44
Target Start/End: Original strand, 18675511 - 18675553
Alignment:
Q  2 tttggtgttcatagagtatttaatttattttcagatgttgtct 44  Q
    ||||||||  |||||||||||||||||||||||||||||||||    
T  18675511 tttggtgtatatagagtatttaatttattttcagatgttgtct 18675553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 129 - 193
Target Start/End: Original strand, 1423241 - 1423304
Alignment:
Q  129 tatgatgtattatgtaaggaaccttttttcatattatgcctaagacctataaaactctaggaacg 193  Q
    |||||||||||||||||||  |||||| |||||||||||||||| |   ||||||||||||||||    
T  1423241 tatgatgtattatgtaagggccctttt-tcatattatgcctaaggctcgtaaaactctaggaacg 1423304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 150 - 193
Target Start/End: Complemental strand, 31473903 - 31473860
Alignment:
Q  150 ccttttttcatattatgcctaagacctataaaactctaggaacg 193  Q
    |||||||||||| |||||||||| ||| ||||||||||||||||    
T  31473903 ccttttttcatactatgcctaaggcctgtaaaactctaggaacg 31473860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 44
Target Start/End: Original strand, 15060301 - 15060343
Alignment:
Q  2 tttggtgttcatagagtatttaatttattttcagatgttgtct 44  Q
    ||||||||  ||||||||||| |||||||||||||||||||||    
T  15060301 tttggtgtctatagagtatttgatttattttcagatgttgtct 15060343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 40
Target Start/End: Original strand, 20990597 - 20990635
Alignment:
Q  2 tttggtgttcatagagtatttaatttattttcagatgtt 40  Q
    ||||||||  |||||||||||||||||||||||||||||    
T  20990597 tttggtgtatatagagtatttaatttattttcagatgtt 20990635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 44
Target Start/End: Complemental strand, 22012061 - 22012019
Alignment:
Q  2 tttggtgttcatagagtatttaatttattttcagatgttgtct 44  Q
    ||||||||  ||||| |||||||||||||||||||||||||||    
T  22012061 tttggtgtatatagaatatttaatttattttcagatgttgtct 22012019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 129 - 193
Target Start/End: Complemental strand, 13758402 - 13758337
Alignment:
Q  129 tatgatgtattatgtaaggaaccttttt-tcatattatgcctaagacctataaaactctaggaacg 193  Q
    |||||||||||||||||||  | ||||| |||||||||||||| ||||| |||||| ||| |||||    
T  13758402 tatgatgtattatgtaaggggcatttttctcatattatgcctacgacctgtaaaacgctatgaacg 13758337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 129 - 193
Target Start/End: Original strand, 15060428 - 15060493
Alignment:
Q  129 tatgatgtattatgtaaggaaccttttt-tcatattatgcctaagacctataaaactctaggaacg 193  Q
    ||||||||||| ||||||| ||| |||| ||||||||||| |||| || |||||||| ||||||||    
T  15060428 tatgatgtattttgtaagggacccttttctcatattatgcataaggcccataaaactttaggaacg 15060493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 44
Target Start/End: Original strand, 1131940 - 1131972
Alignment:
Q  12 atagagtatttaatttattttcagatgttgtct 44  Q
    ||||||||||||||||||||| |||||||||||    
T  1131940 atagagtatttaatttatttttagatgttgtct 1131972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 133 - 193
Target Start/End: Original strand, 20990729 - 20990789
Alignment:
Q  133 atgtattatgtaaggaaccttttttcatattatgcctaagacctataaaactctaggaacg 193  Q
    |||||||||||||||  ||| |||| |||||||||||||| ||  |||||| |||||||||    
T  20990729 atgtattatgtaagggccctatttttatattatgcctaaggcccgtaaaacgctaggaacg 20990789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 129 - 193
Target Start/End: Complemental strand, 22011934 - 22011870
Alignment:
Q  129 tatgatgtattatgtaaggaaccttttttcatattatgcctaagacctataaaactctaggaacg 193  Q
    ||||||| ||||| ||| || |||||||| |||||||| ||||| ||  ||||||||||||||||    
T  22011934 tatgatgcattatataaagaccctttttttatattatgtctaaggcccgtaaaactctaggaacg 22011870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0311 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0311
Description:

Target: scaffold0311; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 144 - 193
Target Start/End: Complemental strand, 4625 - 4576
Alignment:
Q  144 aaggaaccttttttcatattatgcctaagacctataaaactctaggaacg 193  Q
    ||||| |||||||||||| |||||||||| ||  ||||||||||||||||    
T  4625 aaggacccttttttcatactatgcctaaggcccgtaaaactctaggaacg 4576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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