View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7706_low_26 (Length: 228)
Name: NF7706_low_26
Description: NF7706
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7706_low_26 |
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Alignment Details
Target: chr3 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 216
Target Start/End: Original strand, 38953204 - 38953419
Alignment:
| Q |
1 |
tcactgaatagcattgcaaagtgtgatttgtcagaggggcggcttttaatcaaattgatcaaaggattataatgttatcattgaacaaaaaatgtgaata |
100 |
Q |
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| T |
38953204 |
tcactgaatagcattgcaaagtgtgatttgtcagaggggcggcttttaatcaaattgatcaaaggattataatgttatcattgaacaaaatatgtgaata |
38953303 |
T |
|
| Q |
101 |
tattattgatagagaactgactaatgacaggaagatccatctcaagtccaacatgctcaagaagtttgaaaccgtccatgtcaggcatgttaacatcgct |
200 |
Q |
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| T |
38953304 |
tattattgatagagaactgactaatgacaggaagatccatctcaagtccaacatgctcaagaagtttgaaaccgtccatgtcaggcatgttaacatcgct |
38953403 |
T |
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| Q |
201 |
gatcactatctcgtat |
216 |
Q |
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||||||||| |||||| |
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| T |
38953404 |
gatcactatatcgtat |
38953419 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 120 - 209
Target Start/End: Complemental strand, 34316117 - 34316028
Alignment:
| Q |
120 |
actaatgacaggaagatccatctcaagtccaacatgctcaagaagtttgaaaccgtccatgtcaggcatgttaacatcgctgatcactat |
209 |
Q |
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| T |
34316117 |
actaatgacaggaagatccatctcaagtccaacatgttcaagaagtttgaaaccatccatgtcaggcatgtttacatcgctgatcactat |
34316028 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 115 - 208
Target Start/End: Complemental strand, 2893228 - 2893135
Alignment:
| Q |
115 |
aactgactaatgacaggaagatccatctcaagtccaacatgctcaagaagtttgaaaccgtccatgtcaggcatgttaacatcgctgatcacta |
208 |
Q |
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| T |
2893228 |
aacttactgatgacaggtaggtccatctcaagtccaacaagctcaagaagcttaaatccgtccatgtctggcatatgaacattgctgattacta |
2893135 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 115 - 208
Target Start/End: Complemental strand, 2888633 - 2888540
Alignment:
| Q |
115 |
aactgactaatgacaggaagatccatctcaagtccaacatgctcaagaagtttgaaaccgtccatgtcaggcatgttaacatcgctgatcacta |
208 |
Q |
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| T |
2888633 |
aacttacttatgacaggtaaatccatctcaagtccaacaagctcaagaagcttaaatccatccatgtctggcatatgaacattgctgattacta |
2888540 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 115 - 208
Target Start/End: Complemental strand, 2904736 - 2904643
Alignment:
| Q |
115 |
aactgactaatgacaggaagatccatctcaagtccaacatgctcaagaagtttgaaaccgtccatgtcaggcatgttaacatcgctgatcacta |
208 |
Q |
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| T |
2904736 |
aacttactgatgacaggtaggtccatctcaagtccaacaagctcaagaagcttaaatccatccatgtctggcatatgaacattgctgattacta |
2904643 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 120 - 197
Target Start/End: Original strand, 54895038 - 54895115
Alignment:
| Q |
120 |
actaatgacaggaagatccatctcaagtccaacatgctcaagaagtttgaaaccgtccatgtcaggcatgttaacatc |
197 |
Q |
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| T |
54895038 |
actaatgaaaggcaggtccatctcaagtccaacttgctcaaggagcttgaaaccatccatttctggcatgtttacatc |
54895115 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 135 - 197
Target Start/End: Original strand, 54905479 - 54905541
Alignment:
| Q |
135 |
atccatctcaagtccaacatgctcaagaagtttgaaaccgtccatgtcaggcatgttaacatc |
197 |
Q |
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| T |
54905479 |
atccatttcaagtccaacttgctcaaggagcttgaagccatccatgtctggcatgctaacatc |
54905541 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 124 - 188
Target Start/End: Original strand, 48870455 - 48870519
Alignment:
| Q |
124 |
atgacaggaagatccatctcaagtccaacatgctcaagaagtttgaaaccgtccatgtcaggcat |
188 |
Q |
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| T |
48870455 |
atgacaggtaggtccatctcaagtccaacaagctcaagaagcttaaatccatccatgtctggcat |
48870519 |
T |
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