View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7706_low_4 (Length: 562)
Name: NF7706_low_4
Description: NF7706
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7706_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 377; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 62 - 501
Target Start/End: Original strand, 42104878 - 42105318
Alignment:
| Q |
62 |
ggttcttcaacaaacaaacnnnnnnntagaaaccctagggttgacatggtggtgaaggaccatatgacattttaatccacattcgcaaggtgtcaacaat |
161 |
Q |
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| T |
42104878 |
ggttcttcaacaaacagacaaaaaaatagaaaccctagggttgacatggtggtgaaggaccatatgacattttaatccacattcgcaaggtgtcaacaat |
42104977 |
T |
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| Q |
162 |
tcatgtgttgtgttgagacagaacatttagggtttctgatggatatatggtccccgatttagttggtcttagcagaatattgaattttcaaacaatnnnn |
261 |
Q |
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| T |
42104978 |
tcatgtgttgtgttgagacagaacatttagggtttctgatggatatatggtccctgatttagttggtcttagcagaatattgaattttcaaacaataaaa |
42105077 |
T |
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| Q |
262 |
nnnnn-tgataatagaagttttgatacatacccaatttcttccatttcagccatctatgaagaatggtgtgattttcgaattgcagctgactgatggcgg |
360 |
Q |
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| T |
42105078 |
acaaaatgataatagaagttttgatacatacccaatttcttccatttcagccatctatgaagaatggtgtgattttcgaattgcagctgactgatggcgg |
42105177 |
T |
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| Q |
361 |
cggtagagttgcagttgatgaaataacgggattgctaaaagtatgggatccatacttatttctcttaatgaggatcccgaaatttttgaaaatgatgata |
460 |
Q |
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| T |
42105178 |
cggtagagttgcagttgatgaaataacgggattgctaaaagtatgggatccatacttatttctcttaatgaggatcccgaaatttttgaaaatgatgata |
42105277 |
T |
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| Q |
461 |
tggaggcacataaaaaaggtaatagtattagttgattccat |
501 |
Q |
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| T |
42105278 |
tggaggcacataaaaaaggtaatagtattagttgattccat |
42105318 |
T |
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