View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7706_low_7 (Length: 455)
Name: NF7706_low_7
Description: NF7706
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7706_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 338; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 28 - 437
Target Start/End: Original strand, 18285766 - 18286172
Alignment:
| Q |
28 |
gttgcagtagtcaaactgttgaggtaaacatctgaattacttannnnnnnctttctttctcattttctcattcattgttattatgtccttcactaactga |
127 |
Q |
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| T |
18285766 |
gttgcagtagtcaaactgttgaggtaagcatctgaattacttcttctttttttt-tttctcattttctcattcattgttattatgtccttcactaactga |
18285864 |
T |
|
| Q |
128 |
attagtgcaggatttgagtgatcaagccaagcatttacataagcgtatctccgaaattcatgagagattaaggtggattttattaatttttatttgcata |
227 |
Q |
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| T |
18285865 |
atttgtgcaggatttgagtgatcaagccaagcatttacataagcgtatctccgaaattcatgagagattaaggtggattttattaatttttatttgtata |
18285964 |
T |
|
| Q |
228 |
atctatagtttcacactaataattatattatgatgaacatgtcctttagttacaactctcaagccaatctcaaaataaattgtttttgttgtatttttca |
327 |
Q |
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| T |
18285965 |
atctatagtttcacactaataattatattatgatgaacatgtcctttagttacaacttgcaagccaatctc--aataaattgtttttgttgtatttttca |
18286062 |
T |
|
| Q |
328 |
gcaattggtctgatattgaaaaaattagtagtgtggataaactgggacagttggaaaattcactcaaggagtctcttaatcaaattcaaactcataaggt |
427 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18286063 |
gcaattggtctgacattgaaaaaattagtagtgtggataaactgggacagttggaaaattcactcaaggagtctcttaatcaaattcaaactcataaggt |
18286162 |
T |
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| Q |
428 |
atgtacctaa |
437 |
Q |
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| T |
18286163 |
atgtacctaa |
18286172 |
T |
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