View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7706_low_8 (Length: 440)
Name: NF7706_low_8
Description: NF7706
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7706_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 373; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 10 - 422
Target Start/End: Original strand, 44910517 - 44910919
Alignment:
| Q |
10 |
attatactcaaaatggtaccaattccacatacaccagccaaaacaagaaaagtgattctgaaacaatttgcaccgtagcaggtggagtttccttgcttcg |
109 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44910517 |
attatactcaaaatggtaccaattccacatacaccagccaaaacaagaaaagtgattctgaaacaatttgcaccgtagcaggtggagtttccttgcttcg |
44910616 |
T |
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| Q |
110 |
ccgcttcagtatcatacaaatttccagcaaggaaaacagaaaaaagaagggcaccaattggatttcctagcatcatgaagctacttattacaccaaagtg |
209 |
Q |
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| T |
44910617 |
ccgcttcagtatcatacaaatttccagcaa------cagaaaaaagaagggcaccaattggatttcctagcatcatgaagctacttattacaccaaagtg |
44910710 |
T |
|
| Q |
210 |
cttcaaaccaaaaagctcagaaacagttgggaccattatagaatattgaactccatagcacatcccaagtaaagctgttgcagcataaagagtgccatat |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
44910711 |
cttcaaaccaaaaagctcagaaacagttgggaccattatagaatattgaactccatagcacatcccaagtaaagctgttgcagcat----agtgccatat |
44910806 |
T |
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| Q |
310 |
agagctgaagcataaagcaaaaatgctatgatcattatttcttgtgtaattgtcattcaaaatgttctaggtagtgttttcaacctgtcatgatgataac |
409 |
Q |
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| T |
44910807 |
agagctgaagcataaagcaaaaatgctatgatcattatttcttgtgtaattgtcattcaaaatgttctaggtagtgttttcaacctgtcatgatgataac |
44910906 |
T |
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| Q |
410 |
ctaatgagtatat |
422 |
Q |
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| T |
44910907 |
ctaatgagtatat |
44910919 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 118 - 155
Target Start/End: Original strand, 44909652 - 44909689
Alignment:
| Q |
118 |
gtatcatacaaatttccagcaaggaaaacagaaaaaag |
155 |
Q |
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| T |
44909652 |
gtatcatacaaatttccagcaaggaaaacagaaaaaag |
44909689 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 294 - 341
Target Start/End: Original strand, 44936488 - 44936535
Alignment:
| Q |
294 |
ataaagagtgccatatagagctgaagcataaagcaaaaatgctatgat |
341 |
Q |
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|||||||||| | | ||||||||||||||||||||||||| ||||||| |
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| T |
44936488 |
ataaagagtgtcgtctagagctgaagcataaagcaaaaatcctatgat |
44936535 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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