View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7707_high_1 (Length: 1008)

Name: NF7707_high_1
Description: NF7707
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7707_high_1
NF7707_high_1
[»] chr2 (4 HSPs)
chr2 (1-990)||(21090037-21091021)
chr2 (183-345)||(37855042-37855204)
chr2 (747-899)||(37854198-37854350)
chr2 (183-259)||(2835200-2835276)
[»] scaffold0008 (6 HSPs)
scaffold0008 (792-990)||(51611-51809)
scaffold0008 (743-914)||(64009-64180)
scaffold0008 (175-373)||(51053-51251)
scaffold0008 (179-344)||(63306-63471)
scaffold0008 (556-682)||(63652-63778)
scaffold0008 (556-677)||(51373-51494)
[»] chr1 (2 HSPs)
chr1 (556-982)||(31523780-31524209)
chr1 (182-374)||(31524330-31524522)
[»] chr4 (2 HSPs)
chr4 (183-345)||(18097436-18097598)
chr4 (747-899)||(18096592-18096744)


Alignment Details
Target: chr2 (Bit Score: 818; Significance: 0; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 818; E-Value: 0
Query Start/End: Original strand, 1 - 990
Target Start/End: Complemental strand, 21091021 - 21090037
Alignment:
Q  1 ttttccgataacaattgttttattcctttgcgatcctgttgttttgagtcttccatgtcctggaaagaagcacattagttagtcttgtaatatgaatctt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21091021 ttttccgataacaattgttttattcctttgcgatcctgttgttttgagtcttccatgtcctggaaagaagcacattagttagtcttgtaatatgaatctt 21090922  T
Q  101 aacaattaggatttaggaatgtccatgacaaattgaaaaaggatga-ggaaaataaaagaaatg-tactctgccgggtgaggtctggatgccagctgcag 198  Q
    |||||||||||       |||||| |||||||||||||| |||  | |||||||||||||||   |||| ||||||||||||||| ||||||||||||||    
T  21090921 aacaattagga-------atgtccgtgacaaattgaaaagggacaaaggaaaataaaagaaacaatactatgccgggtgaggtcttgatgccagctgcag 21090829  T
Q  199 caagatcggctgaaacagttttggatccttcggaggctgctttcgaacggtagtacttcacgactggtaatttgggaaagatgaacgcgtagagaatgat 298  Q
    ||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||     
T  21090828 caagatcagctgtaacagttttggatccttcggaggctgctttcgaacggtagtacttcacgattggtaatttgggaaagataaacgcgtagagaatgac 21090729  T
Q  299 acacagaagctcaaaaaatgatgatatggcaaagaacagaactgcaaggtcaatataatcacaaatgatcagtataatgacaaataatcaccgtgggagt 398  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||| |||||| |    
T  21090728 acacagaagctcaaaaaatgatgatatggcaaagaacagaactgcagggtcaatataatcacaaatgatcagtataatcacaaataatcactgtgggatt 21090629  T
Q  399 tagaacaagagtcataattgtatatgctatatagtttaaggacaacagacacgaaatgggacaataatacaaaactttgacgcattagaagatctaaaag 498  Q
    |||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  21090628 tagaacgagagtcataattgtatatgctatatagtttaagaacaacagacacgaaatgggacaataatacaaaacttcgacgcattagaagatctaaaag 21090529  T
Q  499 cttaaaataatttctctgttaaccattaatgaagctaaactaagcattgaaaagttaaacttactggctcctttgcgaagaccaccaggagaattctcaa 598  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21090528 cttaaaataatttctctgttaaccattaatgaagctaaactaagcattgaaaagttaaacttactggctcctttgcgaagaccaccaggagaattctcaa 21090429  T
Q  599 acacggcttttgtaattaatctcaaagcagatgttagagcaccagacgctgcagaaccagcaaggaacgactgcaacaataaaatcattatcaaatgtat 698  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21090428 acacggcttttgtaattaatctcaaagctgatgttagagcaccagacgctgcagaaccagcaaggaacgactgcaacaataaaatcattatcaaatgtat 21090329  T
Q  699 atgttgaaagtaacttttgaacctcatagtagtaattacaattgtgatgctggcctgaatgaattccggaagcatgtaagacaggtctcccaccattccg 798  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  21090328 atgttgaaagtaacttttgaacctcatagtagtaattacaattgtgatgctgacctgaatgaattccggaagcatgtaagacaggtctcccaccattccg 21090229  T
Q  799 ccttgtacatgggcatcggctattccaaacacaccactaactatgcatatgccaataaaagttccgatccctcctttaccatatgttgctaaatccaact 898  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||    
T  21090228 ccttgtacatgggcatcggctattccaaatacaccactaactatgcatataccaataaaagttccgatccctcctttaccagatgttgctaaatccaact 21090129  T
Q  899 atagcatgtaaataggagaagtaaaataaaacataaatggatattctagaggaacaaaagtatacaaataaatgaacaggatttacaattaa 990  Q
    || ||| ||||||||||||||| |||||||||||||||  ||||| |||||||||||||||||| ||| |||||||||||||||||||||||    
T  21090128 atggcaagtaaataggagaagttaaataaaacataaattcatattatagaggaacaaaagtatataaacaaatgaacaggatttacaattaa 21090037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 63; E-Value: 7e-27
Query Start/End: Original strand, 183 - 345
Target Start/End: Complemental strand, 37855204 - 37855042
Alignment:
Q  183 tggatgccagctgcagcaagatcggctgaaacagttttggatccttcggaggctgctttcgaacggtagtacttcacgactggtaatttgggaaagatga 282  Q
    ||||||||| | || |||||||| ||||||||||||||||||||||| || |||||||| | ||||||||||||||| | ||||| ||| ||||| |  |    
T  37855204 tggatgccaccagctgcaagatcagctgaaacagttttggatccttctgatgctgcttttgtacggtagtacttcacaattggtattttaggaaaaacaa 37855105  T
Q  283 acgcgtagagaatgatacacagaagctcaaaaaatgatgatatggcaaagaacagaactgcaa 345  Q
    | || |||||||  | ||| ||||||||||| |||| |||||| |||||||| ||||||||||    
T  37855104 atgcatagagaagaacacagagaagctcaaagaatgttgatatagcaaagaatagaactgcaa 37855042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 747 - 899
Target Start/End: Complemental strand, 37854350 - 37854198
Alignment:
Q  747 gctggcctgaatgaattccggaagcatgtaagacaggtctcccaccattccgccttgtacatgggcatcggctattccaaacacaccactaactatgcat 846  Q
    |||| ||||||||||||| ||   |||||| |||| ||||||||||||||| ||||| ||||| ||||| || | ||||||  ||||||||| |   |||    
T  37854350 gctgacctgaatgaattctggcttcatgtaggacaagtctcccaccattccaccttgaacatgagcatctgcaactccaaaggcaccactaattgcacat 37854251  T
Q  847 atgccaataaaagttccgatccctcctttaccatatgttgctaaatccaacta 899  Q
    || |||||||||||||| |  |||||||||||| |||||||||||||||||||    
T  37854250 ataccaataaaagttccaagtcctcctttaccagatgttgctaaatccaacta 37854198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 183 - 259
Target Start/End: Complemental strand, 2835276 - 2835200
Alignment:
Q  183 tggatgccagctgcagcaagatcggctgaaacagttttggatccttcggaggctgctttcgaacggtagtacttcac 259  Q
    ||||||||||| ||||| || || |||| ||||||||| ||||| || ||||||||||||||||||||||| |||||    
T  2835276 tggatgccagcagcagctaggtcagctgcaacagttttcgatccctctgaggctgctttcgaacggtagtatttcac 2835200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008 (Bit Score: 119; Significance: 3e-60; HSPs: 6)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 119; E-Value: 3e-60
Query Start/End: Original strand, 792 - 990
Target Start/End: Original strand, 51611 - 51809
Alignment:
Q  792 cattccgccttgtacatgggcatcggctattccaaacacaccactaactatgcatatgccaataaaagttccgatccctcctttaccatatgttgctaaa 891  Q
    |||||| |||||| || ||||||||||||||||||| ||||| |||||||||||||| ||||| |||||||| | ||||||||| ||| ||| |||||||    
T  51611 cattcctccttgtgcaagggcatcggctattccaaaaacaccgctaactatgcatataccaatgaaagttccaagccctccttttccagatgatgctaaa 51710  T
Q  892 tccaactatagcatgtaaataggagaagtaaaataaaacataaatggatattctagaggaacaaaagtatacaaataaatgaacaggatttacaattaa 990  Q
    ||||||||| ||| ||||||||||||||| |||||||||||||||| |||||||||||||| ||||||||| ||| ||||||||| |||||||||||||    
T  51711 tccaactatggcaagtaaataggagaagttaaataaaacataaatgcatattctagaggaagaaaagtatataaaaaaatgaacatgatttacaattaa 51809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008; HSP #2
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 743 - 914
Target Start/End: Original strand, 64009 - 64180
Alignment:
Q  743 tgatgctggcctgaatgaattccggaagcatgtaagacaggtctcccaccattccgccttgtacatgggcatcggctattccaaacacaccactaactat 842  Q
    |||||||| ||||||| ||||| |||  |||||| ||||||||||| | |||||| |||||| |||| ||||| |||| ||||||  |||||||||||||    
T  64009 tgatgctgacctgaataaattctggattcatgtatgacaggtctccaatcattcctccttgtgcatgagcatctgctaatccaaatgcaccactaactat 64108  T
Q  843 gcatatgccaataaaagttccgatccctcctttaccatatgttgctaaatccaactatagcatgtaaatagg 914  Q
    |||||| ||||| || ||||| ||||||||||||||  |||||||||||||||||||  ||| |||||||||    
T  64109 gcatataccaatgaatgttccaatccctcctttacccgatgttgctaaatccaactacggcacgtaaatagg 64180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008; HSP #3
Raw Score: 75; E-Value: 5e-34
Query Start/End: Original strand, 175 - 373
Target Start/End: Original strand, 51053 - 51251
Alignment:
Q  175 gtgaggtctggatgccagctgcagcaagatcggctgaaacagttttggatccttcggaggctgctttcgaacggtagtacttcacgactggtaatttggg 274  Q
    ||||||||||||||||||||||||||||||| ||||  ||||||||||||||||| || || ||||| ||||| ||||||||||| | ||||||||| ||    
T  51053 gtgaggtctggatgccagctgcagcaagatcagctgcgacagttttggatccttctgatgccgcttttgaacgatagtacttcacaattggtaatttagg 51152  T
Q  275 aaagatgaacgcgtagagaatgatacacagaagctcaaaaaatgatgatatggcaaagaacagaactgcaaggtcaatataatcacaaatgatcagtat 373  Q
    ||| |  || || ||||||||   ||| ||||| ||||| |    ||||||||||||||||| ||||||| || ||||||||| |||||| ||||||||    
T  51153 aaacacaaatgcatagagaatagcacaaagaagttcaaagagaactgatatggcaaagaacataactgcatggacaatataattacaaattatcagtat 51251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008; HSP #4
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 179 - 344
Target Start/End: Original strand, 63306 - 63471
Alignment:
Q  179 ggtctggatgccagctgcagcaagatcggctgaaacagttttggatccttcggaggctgctttcgaacggtagtacttcacgactggtaatttgggaaag 278  Q
    ||||||||| |||||||||||||| || ||||||||||||||||| |||||||| |||||||| ||||| ||||||||||| | ||||||||| |||||     
T  63306 ggtctggattccagctgcagcaaggtcagctgaaacagttttggacccttcggatgctgcttttgaacgatagtacttcacaattggtaatttaggaaac 63405  T
Q  279 atgaacgcgtagagaatgatacacagaagctcaaaaaatgatgatatggcaaagaacagaactgca 344  Q
    |  || || |||||||  | ||| ||||||||||| || | ||||| || |||||| |||||||||    
T  63406 acaaatgcatagagaacaacacaaagaagctcaaacaaggttgataaggaaaagaaaagaactgca 63471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008; HSP #5
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 556 - 682
Target Start/End: Original strand, 63652 - 63778
Alignment:
Q  556 aacttactggctcctttgcgaagaccaccaggagaattctcaaacacggcttttgtaattaatctcaaagcagatgttagagcaccagacgctgcagaac 655  Q
    |||||||| |||||||||||||||||  |   |||||| ||||| |  |||||||||||||| |||||||| |||||||||||||| || ||||||| ||    
T  63652 aacttactcgctcctttgcgaagaccgtctttagaattttcaaatattgcttttgtaattaacctcaaagccgatgttagagcacctgatgctgcagcac 63751  T
Q  656 cagcaaggaacgactgcaacaataaaa 682  Q
    |  ||||||| |||| |||||||||||    
T  63752 cgccaaggaaagactacaacaataaaa 63778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 556 - 677
Target Start/End: Original strand, 51373 - 51494
Alignment:
Q  556 aacttactggctcctttgcgaagaccaccaggagaattctcaaacacggcttttgtaattaatctcaaagcagatgttagagcaccagacgctgcagaac 655  Q
    |||||||| |||||||||||||||||  |   |||||| ||||| |  |||||||| ||||| |||||| |||||||||| ||||| || |||||   ||    
T  51373 aacttactcgctcctttgcgaagaccgtccttagaattttcaaatattgcttttgtgattaacctcaaaacagatgttagtgcacctgaggctgcttcac 51472  T
Q  656 cagcaaggaacgactgcaacaa 677  Q
    | ||||| || |||||||||||    
T  51473 ctgcaagaaaagactgcaacaa 51494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 69; Significance: 2e-30; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 556 - 982
Target Start/End: Complemental strand, 31524209 - 31523780
Alignment:
Q  556 aacttactggctcctttgcgaagaccaccaggagaattctcaaacacggcttttgtaattaatctcaaagcagatgttagagcaccagacgctgcagaac 655  Q
    |||||||| |||||||||||||||||  |   |||||| ||||| |  |||||||| ||||| |||||| |||||||||| ||||| || |||||    |    
T  31524209 aacttactcgctcctttgcgaagaccgtccttagaattttcaaatattgcttttgtgattaacctcaaaacagatgttagtgcacctgaggctgcttccc 31524110  T
Q  656 cagcaaggaacgactgcaacaat--aaaatcattatcaaatgt---atatgttgaaagtaacttttgaacctcatagtagtaattacaattgtgatgctg 750  Q
    | ||||| || |||||||||||   |||| || | | |||| |   |||| ||||| | || |||||||||| ||||||  |||| || | |||||||||    
T  31524109 ctgcaagaaaagactgcaacaaagaaaaaccaat-taaaattttgcatatattgaaggaaaattttgaaccttatagta--aattccattggtgatgctg 31524013  T
Q  751 gcctgaatgaattccggaagcatgtaagacaggtctcccaccattccgccttgtacatgggcatcggctattccaaacacaccactaactatgcatatgc 850  Q
     |||| ||||| || ||| ||||  | || |  ||||| | |||||| |||||| || | ||||| ||||||||||| ||||| |||||||||||||| |    
T  31524012 acctgcatgaaatctggatgcattaaggatatatctccaatcattcctccttgtgcaagagcatctgctattccaaaaacaccgctaactatgcatatac 31523913  T
Q  851 caataaaagttccgatccctcctttaccatatgttgctaaatccaactatagcatgtaaataggagaagtaaaat-aaaacataaatggatattctagag 949  Q
    |||| |||||||| | ||||||||| ||| |||||||||||||||||||  |||  |||||| || || |||||| |||| | ||||| |||||||||||    
T  31523912 caatgaaagttccaagccctccttttccagatgttgctaaatccaactaaggcaaataaataagaaaaataaaatcaaaaaacaaatgcatattctagag 31523813  T
Q  950 gaacaaaagtatacaaataaatgaacaggattt 982  Q
    ||   ||||| |||||| ||||||||| |||||    
T  31523812 gagtcaaagtttacaaacaaatgaacatgattt 31523780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 65; E-Value: 5e-28
Query Start/End: Original strand, 182 - 374
Target Start/End: Complemental strand, 31524522 - 31524330
Alignment:
Q  182 ctggatgccagctgcagcaagatcggctgaaacagttttggatccttcggaggctgctttcgaacggtagtacttcacgactggtaatttgggaaagatg 281  Q
    |||||||||| || |||||||||| ||||  ||||||||||||||||| || || ||||| ||||| ||||||||||| | ||||||||| ||||| ||     
T  31524522 ctggatgccaactacagcaagatcagctgtgacagttttggatccttctgatgccgcttttgaacgatagtacttcacaattggtaatttaggaaacata 31524423  T
Q  282 aacgcgtagagaatgatacacagaagctcaaaaaatgatgatatggcaaagaacagaactgcaaggtcaatataatcacaaatgatcagtata 374  Q
    || ||||||||||   | || ||||| ||||| | |  ||||||||||||||||| ||||||| || || |||||| |||||| |||||||||    
T  31524422 aatgcgtagagaacagtgcaaagaagttcaaagagtattgatatggcaaagaacataactgcatggacagtataattacaaattatcagtata 31524330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 63; Significance: 7e-27; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 63; E-Value: 7e-27
Query Start/End: Original strand, 183 - 345
Target Start/End: Complemental strand, 18097598 - 18097436
Alignment:
Q  183 tggatgccagctgcagcaagatcggctgaaacagttttggatccttcggaggctgctttcgaacggtagtacttcacgactggtaatttgggaaagatga 282  Q
    ||||||||| | || |||||||| ||||||||||||||||||||||| || |||||||| | ||||||||||||||| | ||||| ||| ||||| |  |    
T  18097598 tggatgccaccagctgcaagatcagctgaaacagttttggatccttctgatgctgcttttgtacggtagtacttcacaattggtattttaggaaaaacaa 18097499  T
Q  283 acgcgtagagaatgatacacagaagctcaaaaaatgatgatatggcaaagaacagaactgcaa 345  Q
    | || |||||||  | ||| ||||||||||| |||| |||||| |||||||| ||||||||||    
T  18097498 atgcatagagaagaacacagagaagctcaaagaatgttgatatagcaaagaatagaactgcaa 18097436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 747 - 899
Target Start/End: Complemental strand, 18096744 - 18096592
Alignment:
Q  747 gctggcctgaatgaattccggaagcatgtaagacaggtctcccaccattccgccttgtacatgggcatcggctattccaaacacaccactaactatgcat 846  Q
    |||| ||||||||||||| ||   |||||| |||| ||||||||||||||| ||||| ||||| ||||| || | ||||||  ||||||||| |   |||    
T  18096744 gctgacctgaatgaattctggcttcatgtaggacaagtctcccaccattccaccttgaacatgagcatctgcaactccaaaggcaccactaattgcacat 18096645  T
Q  847 atgccaataaaagttccgatccctcctttaccatatgttgctaaatccaacta 899  Q
    || |||||||||||||| |  |||||||||||| |||||||||||||||||||    
T  18096644 ataccaataaaagttccaagtcctcctttaccagatgttgctaaatccaacta 18096592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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