View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7707_high_3 (Length: 380)
Name: NF7707_high_3
Description: NF7707
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7707_high_3 |
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Alignment Details
Target: chr2 (Bit Score: 108; Significance: 4e-54; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 228 - 368
Target Start/End: Complemental strand, 36707498 - 36707358
Alignment:
| Q |
228 |
taacagttccaattccacacactcacaagaagctgaaacaaaacctgnnnnnnnaagcaacactaacacataacccctctcaagtactcaacgcttcaca |
327 |
Q |
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| T |
36707498 |
taacagttccacttccacacactcacaagaagctgaaacaaaacctgtttttttaagcaacactaacacataacccctctcaagtactcaacacttcaca |
36707399 |
T |
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| Q |
328 |
caaacccaacaagctccatttcattcttaaacattcatctc |
368 |
Q |
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| T |
36707398 |
caaacccatcaagctccatttcattcttaaacattcatctc |
36707358 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 92 - 168
Target Start/End: Complemental strand, 36707619 - 36707543
Alignment:
| Q |
92 |
ttctctttctttctgactcccgacactgtttcataacccgaaaagcaacctctgcaaacccttcctctttctctaac |
168 |
Q |
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| T |
36707619 |
ttctctttctttctgactcccgacactgtttcataacccgaaaagcaacctctgcaaacccttcctctttctctaac |
36707543 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 36707715 - 36707650
Alignment:
| Q |
1 |
cccaactcccaaccccactcactcactctctctctgtaataacgttctatgattcaccaaacatag |
66 |
Q |
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| T |
36707715 |
cccaactcccaaccccactcactcactctctctctgtaataacgttctatgattcaccaaacatag |
36707650 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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