View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7708A_high_13 (Length: 406)
Name: NF7708A_high_13
Description: NF7708A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7708A_high_13 |
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Alignment Details
Target: chr2 (Bit Score: 278; Significance: 1e-155; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 15 - 351
Target Start/End: Original strand, 13871205 - 13871558
Alignment:
| Q |
15 |
atcaacacttttgtcattccactcgtgagcggccaaatatcgcttatcaatcggcacatatggcacatgttttttggcctaccaataaagtcaacacttg |
114 |
Q |
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| T |
13871205 |
atcaacacttttgtcattccactcgtgagcggccaaatatcgcttatcaatcggcgcatatggcacatgttttttggcctaccaataaagtcaacacttg |
13871304 |
T |
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| Q |
115 |
ttaacaaataacacataatctatgataacgaatttagacaataagtgttaagtttttacataacatctccggtgccgcaatgatatgagactctgtgatg |
214 |
Q |
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| T |
13871305 |
ttgacaaataacacataatctatgataacgaatttggacaataagtgttaagtttttacataacatctccggtgccgcaatgatatgagactctgtgatg |
13871404 |
T |
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| Q |
215 |
tagaccctttggaagtgtgtactttcccaatgggtaacaagatcagccatgcctgctcatctat-----------------ccttcttcctcgccttcgt |
297 |
Q |
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| T |
13871405 |
tagaccctttggaagtgtgtactttcccaatgggtaacaagatcagccatgcctgctcatctatccaaccagggctgacccccttcttcctcgctttcat |
13871504 |
T |
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| Q |
298 |
atgtataagataatttgtgcatctcttcttaaatgcgttatagacaagctcatg |
351 |
Q |
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| T |
13871505 |
atgtataagataatttgtgcatctcttcttaaatgcgttatagacaagctcatg |
13871558 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 15 - 351
Target Start/End: Original strand, 14011330 - 14011683
Alignment:
| Q |
15 |
atcaacacttttgtcattccactcgtgagcggccaaatatcgcttatcaatcggcacatatggcacatgttttttggcctaccaataaagtcaacacttg |
114 |
Q |
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| T |
14011330 |
atcaacacttttgtcattccactcgtgagcggccaaatatcgcttatcaatcggcgcatatggcacatgttttttggcctaccaataaagtcaacacttg |
14011429 |
T |
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| Q |
115 |
ttaacaaataacacataatctatgataacgaatttagacaataagtgttaagtttttacataacatctccggtgccgcaatgatatgagactctgtgatg |
214 |
Q |
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| T |
14011430 |
ttgacaaataacacataatctatgataacgaatttggacaataagtgttaagtttttacataacatctccggtgccgcaatgatatgagactctgtgatg |
14011529 |
T |
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| Q |
215 |
tagaccctttggaagtgtgtactttcccaatgggtaacaagatcagccatgcctgctcatctat-----------------ccttcttcctcgccttcgt |
297 |
Q |
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| T |
14011530 |
tagaccctttggaagtgtgtactttcccaatgggtaacaagatcagccatgcctgctcatctatccaaccagggctgacccccttcttcctcgctttcat |
14011629 |
T |
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| Q |
298 |
atgtataagataatttgtgcatctcttcttaaatgcgttatagacaagctcatg |
351 |
Q |
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| T |
14011630 |
atgtataagataatttgtgcatctcttcttaaatgcgttatagacaagctcatg |
14011683 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 353 - 406
Target Start/End: Original strand, 13872057 - 13872110
Alignment:
| Q |
353 |
tgatcatgattttcctccatttgtagaggccgttgcggcatagattcttgtatt |
406 |
Q |
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| T |
13872057 |
tgatcatgattttcctccatttgtagaggccgttgcggcatagattcttgtatt |
13872110 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 353 - 406
Target Start/End: Original strand, 14012182 - 14012235
Alignment:
| Q |
353 |
tgatcatgattttcctccatttgtagaggccgttgcggcatagattcttgtatt |
406 |
Q |
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| T |
14012182 |
tgatcatgattttcctccatttgtagaggccgttgcggcatagattcttgtatt |
14012235 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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