View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7708A_high_22 (Length: 323)

Name: NF7708A_high_22
Description: NF7708A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7708A_high_22
NF7708A_high_22
[»] chr6 (12 HSPs)
chr6 (153-308)||(25195062-25195217)
chr6 (1-88)||(25195282-25195369)
chr6 (1-64)||(4910990-4911053)
chr6 (169-238)||(882746-882816)
chr6 (1-64)||(3482128-3482191)
chr6 (169-232)||(34620946-34621010)
chr6 (169-232)||(34748383-34748447)
chr6 (11-62)||(4908054-4908105)
chr6 (1-64)||(16540189-16540252)
chr6 (7-62)||(28929622-28929677)
chr6 (4-63)||(31710359-31710418)
chr6 (17-65)||(31764596-31764644)
[»] chr4 (6 HSPs)
chr4 (3-62)||(39733582-39733641)
chr4 (1-62)||(16552037-16552098)
chr4 (169-244)||(33843771-33843847)
chr4 (1-64)||(1616472-1616534)
chr4 (169-238)||(41751227-41751297)
chr4 (169-238)||(55927725-55927795)
[»] chr2 (12 HSPs)
chr2 (1-62)||(22536080-22536141)
chr2 (1-63)||(33047523-33047585)
chr2 (1-64)||(33019096-33019159)
chr2 (168-237)||(15220817-15220887)
chr2 (10-64)||(15928398-15928452)
chr2 (9-63)||(13912877-13912931)
chr2 (169-232)||(1976825-1976889)
chr2 (169-239)||(16518838-16518909)
chr2 (189-238)||(3853933-3853983)
chr2 (184-232)||(680251-680300)
chr2 (9-50)||(10126174-10126215)
chr2 (1-61)||(37551168-37551228)
[»] chr3 (8 HSPs)
chr3 (11-77)||(21357021-21357087)
chr3 (16-54)||(52364148-52364186)
chr3 (181-244)||(1441356-1441420)
chr3 (7-58)||(25359520-25359571)
chr3 (184-244)||(3776597-3776658)
chr3 (169-237)||(35264367-35264436)
chr3 (184-235)||(7262889-7262941)
chr3 (8-60)||(40736480-40736532)
[»] chr1 (9 HSPs)
chr1 (7-65)||(2099626-2099684)
chr1 (8-64)||(3416169-3416225)
chr1 (7-64)||(30557590-30557647)
chr1 (189-239)||(15515023-15515074)
chr1 (1-62)||(34721782-34721843)
chr1 (7-35)||(6283217-6283245)
chr1 (184-239)||(34915141-34915197)
chr1 (184-239)||(35961443-35961499)
chr1 (7-67)||(38797567-38797627)
[»] scaffold0168 (1 HSPs)
scaffold0168 (1-64)||(31911-31974)
[»] chr8 (10 HSPs)
chr8 (169-239)||(16972018-16972089)
chr8 (11-65)||(44140999-44141053)
chr8 (3-64)||(26668634-26668695)
chr8 (17-86)||(29512900-29512969)
chr8 (1-62)||(32101155-32101216)
chr8 (1-46)||(37684487-37684532)
chr8 (1-57)||(13384595-13384651)
chr8 (10-86)||(19649229-19649305)
chr8 (169-239)||(32927952-32928023)
chr8 (189-238)||(10368045-10368095)
[»] chr7 (12 HSPs)
chr7 (1-60)||(28724996-28725055)
chr7 (177-239)||(40491646-40491709)
chr7 (184-244)||(45557440-45557501)
chr7 (189-244)||(1442651-1442707)
chr7 (7-67)||(40903966-40904025)
chr7 (181-238)||(40795944-40796002)
chr7 (171-239)||(27571924-27571993)
chr7 (173-237)||(40561714-40561779)
chr7 (189-244)||(33853433-33853489)
chr7 (4-67)||(45719279-45719342)
chr7 (184-244)||(12306798-12306859)
chr7 (15-64)||(31625532-31625581)
[»] scaffold0041 (1 HSPs)
scaffold0041 (7-67)||(45993-46052)
[»] chr5 (4 HSPs)
chr5 (7-64)||(38265022-38265079)
chr5 (169-244)||(35138972-35139048)
chr5 (169-236)||(37877118-37877186)
chr5 (173-244)||(117445-117517)
[»] scaffold0361 (1 HSPs)
scaffold0361 (169-232)||(14075-14139)
[»] scaffold0009 (1 HSPs)
scaffold0009 (43-86)||(199359-199402)


Alignment Details
Target: chr6 (Bit Score: 156; Significance: 7e-83; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 156; E-Value: 7e-83
Query Start/End: Original strand, 153 - 308
Target Start/End: Complemental strand, 25195217 - 25195062
Alignment:
Q  153 gttcaaattagataccaatttattgtttaaatcacatttacatgaatgtatccaacataaaacactttaccttcaactcacttttagacagataatttcc 252  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25195217 gttcaaattagataccaatttattgtttaaatcacatttacatgaatgtatccaacataaaacactttaccttcaactcacttttagacagataatttcc 25195118  T
Q  253 caatattatctttgtgatctacctaaacatgtttacttcctcttattgattgatgt 308  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25195117 caatattatctttgtgatctacctaaacatgtttacttcctcttattgattgatgt 25195062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 25195369 - 25195282
Alignment:
Q  1 tacataaatgtatccaaacacaaatcacttttaattagaattacttttaactaaaatcaattctctccaacgcacaaccaaacacatg 88  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  25195369 tacataaatgtatccaaacacaaatcacttttaattagaattactttgaactaaaatcaattctctccaacgcacaaccaaacacatg 25195282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 4910990 - 4911053
Alignment:
Q  1 tacataaatgtatccaaacacaaatcacttttaattagaattacttttaactaaaatcaattct 64  Q
    |||||||||||||||||||| |||||||||||| | ||||||||||||||| ||||| ||||||    
T  4910990 tacataaatgtatccaaacataaatcacttttagtcagaattacttttaaccaaaattaattct 4911053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 169 - 238
Target Start/End: Original strand, 882746 - 882816
Alignment:
Q  169 aatttattgtttaaatcacatttacatgaatgtatcc-aacataaaacactttaccttcaactcactttta 238  Q
    |||||||||||||| |||| ||| ||||||||||||| |||||||| || ||||||||||||||| |||||    
T  882746 aatttattgtttaactcacttttgcatgaatgtatccaaacataaatcattttaccttcaactcaatttta 882816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 3482128 - 3482191
Alignment:
Q  1 tacataaatgtatccaaacacaaatcacttttaattagaattacttttaactaaaatcaattct 64  Q
    ||||| ||||||| ||||||||||||||||||| | ||||| | ||||||| ||||||||||||    
T  3482128 tacatgaatgtattcaaacacaaatcacttttattgagaatcatttttaaccaaaatcaattct 3482191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 169 - 232
Target Start/End: Original strand, 34620946 - 34621010
Alignment:
Q  169 aatttattgtttaaatcacatttacatgaatgtatccaa-cataaaacactttaccttcaactca 232  Q
    |||||||| || || |||| ||||||| ||||||||||| |||||| ||||||||||||||||||    
T  34620946 aatttatttttcaactcacttttacataaatgtatccaaacataaatcactttaccttcaactca 34621010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 169 - 232
Target Start/End: Original strand, 34748383 - 34748447
Alignment:
Q  169 aatttattgtttaaatcacatttacatgaatgtatccaa-cataaaacactttaccttcaactca 232  Q
    |||||||| || || |||| ||||||| ||||||||||| |||||| ||||||||||||||||||    
T  34748383 aatttatttttcaactcacttttacataaatgtatccaaacataaatcactttaccttcaactca 34748447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 11 - 62
Target Start/End: Original strand, 4908054 - 4908105
Alignment:
Q  11 tatccaaacacaaatcacttttaattagaattacttttaactaaaatcaatt 62  Q
    |||||||||||||||||||||||   ||||| ||||||||| ||||||||||    
T  4908054 tatccaaacacaaatcacttttaggaagaatcacttttaaccaaaatcaatt 4908105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 16540189 - 16540252
Alignment:
Q  1 tacataaatgtatccaaacacaaatcacttttaattagaattacttttaactaaaatcaattct 64  Q
    ||||| |||||||||||||||||| ||||| |  || ||||||||| |||| ||||||||||||    
T  16540189 tacatcaatgtatccaaacacaaaccacttctggttggaattacttctaaccaaaatcaattct 16540252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 7 - 62
Target Start/End: Complemental strand, 28929677 - 28929622
Alignment:
Q  7 aatgtatccaaacacaaatcacttttaattagaattacttttaactaaaatcaatt 62  Q
    ||||||| ||||||||||||| |||||  |||||||| ||||||| ||||||||||    
T  28929677 aatgtattcaaacacaaatcatttttagctagaattatttttaaccaaaatcaatt 28929622  T

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Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 4 - 63
Target Start/End: Complemental strand, 31710418 - 31710359
Alignment:
Q  4 ataaatgtatccaaacacaaatcacttttaattagaattacttttaactaaaatcaattc 63  Q
    |||||| |||| ||||||||| |||||||| ||  ||||||||||||||||||| |||||    
T  31710418 ataaatatatctaaacacaaaccacttttagttgaaattacttttaactaaaattaattc 31710359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 17 - 65
Target Start/End: Original strand, 31764596 - 31764644
Alignment:
Q  17 aacacaaatcacttttaattagaattacttttaactaaaatcaattctc 65  Q
    |||| |||||||||||||| |||| || ||||||| |||||||||||||    
T  31764596 aacataaatcacttttaatcagaactatttttaaccaaaatcaattctc 31764644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 52; Significance: 8e-21; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 3 - 62
Target Start/End: Complemental strand, 39733641 - 39733582
Alignment:
Q  3 cataaatgtatccaaacacaaatcacttttaattagaattacttttaactaaaatcaatt 62  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||    
T  39733641 cataaatgtatccaaacacaaatcacttttaatcagaattacttttaaccaaaatcaatt 39733582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 16552037 - 16552098
Alignment:
Q  1 tacataaatgtatccaaacacaaatcacttttaattagaattacttttaactaaaatcaatt 62  Q
    ||||| ||||||||||| | |||||||| |||||| | ||||||||||||| ||||||||||    
T  16552037 tacatgaatgtatccaatctcaaatcacgtttaatcataattacttttaaccaaaatcaatt 16552098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 169 - 244
Target Start/End: Original strand, 33843771 - 33843847
Alignment:
Q  169 aatttattgtttaaatcacatttacatgaatgtatccaa-cataaaacactttaccttcaactcacttttagacaga 244  Q
    ||||||||||| || ||||  |||||||||| ||||||| |||||| |||||||| | |||||||||||||| ||||    
T  33843771 aatttattgttcaactcactattacatgaatatatccaaacataaatcactttacatccaactcacttttagccaga 33843847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 1616472 - 1616534
Alignment:
Q  1 tacataaatgtatccaaacacaaatcacttttaattagaattacttttaactaaaatcaattct 64  Q
    ||||| ||||||| |||||||||| |||||| | ||||||||| ||||||| ||||||||||||    
T  1616472 tacatgaatgtattcaaacacaaaccacttt-agttagaattaattttaaccaaaatcaattct 1616534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 169 - 238
Target Start/End: Complemental strand, 41751297 - 41751227
Alignment:
Q  169 aatttattgtttaaatcacatttacatgaatgta-tccaacataaaacactttaccttcaactcactttta 238  Q
    |||||||||||||| |||  |||||||||||||| || ||||| || ||||||| ||| ||||||||||||    
T  41751297 aatttattgtttaattcagttttacatgaatgtattcaaacattaatcactttatcttgaactcactttta 41751227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 169 - 238
Target Start/End: Complemental strand, 55927795 - 55927725
Alignment:
Q  169 aatttattgtttaaatcacatttacatgaatgtatcc-aacataaaacactttaccttcaactcactttta 238  Q
    ||||||||||| || |||| ||||||||||||||||| |||||||| ||| ||| || ||||||| |||||    
T  55927795 aatttattgttcaagtcacttttacatgaatgtatccaaacataaatcacattaactccaactcaatttta 55927725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 46; Significance: 3e-17; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 22536080 - 22536141
Alignment:
Q  1 tacataaatgtatccaaacacaaatcacttttaattagaattacttttaactaaaatcaatt 62  Q
    ||||||||||||||||||||||||||||||||| |||||| |||||| ||| ||||||||||    
T  22536080 tacataaatgtatccaaacacaaatcacttttagttagaaatactttcaaccaaaatcaatt 22536141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 33047585 - 33047523
Alignment:
Q  1 tacataaatgtatccaaacacaaatcacttttaattagaattacttttaactaaaatcaattc 63  Q
    ||||||||||||||||||||||||||||||||||| | |||||||||| || ||||| |||||    
T  33047585 tacataaatgtatccaaacacaaatcacttttaatcataattacttttgacaaaaataaattc 33047523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 33019159 - 33019096
Alignment:
Q  1 tacataaatgtatccaaacacaaatcacttttaattagaattacttttaactaaaatcaattct 64  Q
    ||||| |||| |||||||||||||||||||||| | ||||| ||||||||| ||||||||||||    
T  33019159 tacatgaatgcatccaaacacaaatcacttttagtcagaatcacttttaaccaaaatcaattct 33019096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 168 - 237
Target Start/End: Complemental strand, 15220887 - 15220817
Alignment:
Q  168 caatttattgtttaaatcacatttacatgaatgtatccaa-cataaaacactttaccttcaactcactttt 237  Q
    |||||||||||| || |||| || |||||||||||||||| |||||| |||||||| ||||||||||||||    
T  15220887 caatttattgttcaactcactttaacatgaatgtatccaaacataaatcactttacattcaactcactttt 15220817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 10 - 64
Target Start/End: Complemental strand, 15928452 - 15928398
Alignment:
Q  10 gtatccaaacacaaatcacttttaattagaattacttttaactaaaatcaattct 64  Q
    |||||| |||||||| |||||||| ||||||||||||||||| ||||||||||||    
T  15928452 gtatcccaacacaaaccacttttagttagaattacttttaaccaaaatcaattct 15928398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 9 - 63
Target Start/End: Original strand, 13912877 - 13912931
Alignment:
Q  9 tgtatccaaacacaaatcacttttaattagaattacttttaactaaaatcaattc 63  Q
    ||||||||||||||||||||||||  | ||||||| ||||||| |||||||||||    
T  13912877 tgtatccaaacacaaatcactttttgtcagaattaattttaaccaaaatcaattc 13912931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 169 - 232
Target Start/End: Complemental strand, 1976889 - 1976825
Alignment:
Q  169 aatttattgtttaaatcacatttacatgaatgtatcc-aacataaaacactttaccttcaactca 232  Q
    ||||||||||| || |||| ||||||||||||||||| |||||||  | ||||||||||||||||    
T  1976889 aatttattgttgaactcacttttacatgaatgtatccaaacataagtcgctttaccttcaactca 1976825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 169 - 239
Target Start/End: Original strand, 16518838 - 16518909
Alignment:
Q  169 aatttattgtttaaatcacatttacatgaatgtatcc-aacataaaacactttaccttcaactcacttttag 239  Q
    ||||||| ||| || |||| ||||||||||||||||| |||| ||| || |||||| |||||||||||||||    
T  16518838 aatttatagttcaactcacttttacatgaatgtatccaaacacaaatcattttaccctcaactcacttttag 16518909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 189 - 238
Target Start/End: Original strand, 3853933 - 3853983
Alignment:
Q  189 tttacatgaatgtatccaa-cataaaacactttaccttcaactcactttta 238  Q
    ||||||||||||||||||| |||||| || ||||| |||||||||||||||    
T  3853933 tttacatgaatgtatccaaacataaatcaatttacattcaactcactttta 3853983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 184 - 232
Target Start/End: Complemental strand, 680300 - 680251
Alignment:
Q  184 tcacatttacatgaatgtatccaa-cataaaacactttaccttcaactca 232  Q
    |||| ||||||||||||||| ||| || ||||||||||||||||||||||    
T  680300 tcacttttacatgaatgtatgcaaacacaaaacactttaccttcaactca 680251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 50
Target Start/End: Original strand, 10126174 - 10126215
Alignment:
Q  9 tgtatccaaacacaaatcacttttaattagaattacttttaa 50  Q
    ||||| ||||||||||||||||||||| | ||||||||||||    
T  10126174 tgtattcaaacacaaatcacttttaatcaaaattacttttaa 10126215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 37551228 - 37551168
Alignment:
Q  1 tacataaatgtatccaaacacaaatcacttttaattagaattacttttaactaaaatcaat 61  Q
    ||||| ||||||| |||| ||||||||| ||||||  |||||||||||||  |||||||||    
T  37551228 tacattaatgtattcaaatacaaatcacatttaatacgaattacttttaatcaaaatcaat 37551168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 11 - 77
Target Start/End: Original strand, 21357021 - 21357087
Alignment:
Q  11 tatccaaacacaaatcacttttaattagaattacttttaactaaaatcaattctctccaacgcacaa 77  Q
    |||| ||||||||||||||||||| |||||||| ||||||  ||||||||||||||||| |||||||    
T  21357021 tatctaaacacaaatcacttttaactagaattatttttaatcaaaatcaattctctccaccgcacaa 21357087  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 16 - 54
Target Start/End: Original strand, 52364148 - 52364186
Alignment:
Q  16 aaacacaaatcacttttaattagaattacttttaactaa 54  Q
    |||||||||||| ||||||||||||||||||||||||||    
T  52364148 aaacacaaatcaattttaattagaattacttttaactaa 52364186  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 181 - 244
Target Start/End: Complemental strand, 1441420 - 1441356
Alignment:
Q  181 aaatcacatttacatgaatgtatccaa-cataaaacactttaccttcaactcacttttagacaga 244  Q
    ||||||| ||||| |||||||||| || || ||| |||||||| |||||||||||||||||||||    
T  1441420 aaatcacttttacgtgaatgtatctaaacacaaatcactttacgttcaactcacttttagacaga 1441356  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 7 - 58
Target Start/End: Complemental strand, 25359571 - 25359520
Alignment:
Q  7 aatgtatccaaacacaaatcacttttaattagaattacttttaactaaaatc 58  Q
    ||||||||||||||||||||||||||  | ||||||| ||||||| ||||||    
T  25359571 aatgtatccaaacacaaatcactttttgtcagaattatttttaaccaaaatc 25359520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 184 - 244
Target Start/End: Original strand, 3776597 - 3776658
Alignment:
Q  184 tcacatttacatgaatgtatccaa-cataaaacactttaccttcaactcacttttagacaga 244  Q
    |||| ||||||| ||||||||||| |||||| |||||||| ||||||||| |||||| ||||    
T  3776597 tcacttttacatcaatgtatccaagcataaatcactttacattcaactcaattttagccaga 3776658  T

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Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 169 - 237
Target Start/End: Complemental strand, 35264436 - 35264367
Alignment:
Q  169 aatttattgtttaaatcacatttacatgaatgtatccaa-cataaaacactttaccttcaactcactttt 237  Q
    ||||||||||| || |||  |||||||||||||| |||| |||||  |||||||| ||||||||||||||    
T  35264436 aatttattgttcaagtcatttttacatgaatgtacccaaacataactcactttactttcaactcactttt 35264367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 184 - 235
Target Start/End: Original strand, 7262889 - 7262941
Alignment:
Q  184 tcacatttacatgaatgtatccaa-cataaaacactttaccttcaactcactt 235  Q
    |||| |||||||||||||||| || ||||||||| | ||||||||||||||||    
T  7262889 tcacttttacatgaatgtatcaaaacataaaacattataccttcaactcactt 7262941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 8 - 60
Target Start/End: Complemental strand, 40736532 - 40736480
Alignment:
Q  8 atgtatccaaacacaaatcacttttaattagaattacttttaactaaaatcaa 60  Q
    |||||| ||||||||||||| ||||||||| ||||  ||||||| ||||||||    
T  40736532 atgtattcaaacacaaatcatttttaattaaaattgtttttaaccaaaatcaa 40736480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 7 - 65
Target Start/End: Complemental strand, 2099684 - 2099626
Alignment:
Q  7 aatgtatccaaacacaaatcacttttaattagaattacttttaactaaaatcaattctc 65  Q
    ||||||||||||||||||||||||||| | | ||||||||||||| |||||||||||||    
T  2099684 aatgtatccaaacacaaatcacttttactcaaaattacttttaaccaaaatcaattctc 2099626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 8 - 64
Target Start/End: Original strand, 3416169 - 3416225
Alignment:
Q  8 atgtatccaaacacaaatcacttttaattagaattacttttaactaaaatcaattct 64  Q
    ||||||||||| |||||| ||||||||| ||||||||||||||| |||||| |||||    
T  3416169 atgtatccaaagacaaataacttttaatcagaattacttttaaccaaaatcgattct 3416225  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 7 - 64
Target Start/End: Original strand, 30557590 - 30557647
Alignment:
Q  7 aatgtatccaaacacaaatcacttttaattagaattacttttaactaaaatcaattct 64  Q
    |||||||||||||||||||||||| || | ||| | ||||||||| ||||||||||||    
T  30557590 aatgtatccaaacacaaatcacttctagtcagagtcacttttaaccaaaatcaattct 30557647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 189 - 239
Target Start/End: Complemental strand, 15515074 - 15515023
Alignment:
Q  189 tttacatgaatgtatccaa-cataaaacactttaccttcaactcacttttag 239  Q
    ||||||||||| ||||||| |||||| | |||||||||||||||||||||||    
T  15515074 tttacatgaatttatccaatcataaatcgctttaccttcaactcacttttag 15515023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 34721843 - 34721782
Alignment:
Q  1 tacataaatgtatccaaacacaaatcacttttaattagaattacttttaactaaaatcaatt 62  Q
    ||||| ||||||| |||| |||||||||||||  ||  ||||||||||||| ||||||||||    
T  34721843 tacatcaatgtattcaaatacaaatcacttttggtttcaattacttttaaccaaaatcaatt 34721782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 7 - 35
Target Start/End: Complemental strand, 6283245 - 6283217
Alignment:
Q  7 aatgtatccaaacacaaatcacttttaat 35  Q
    |||||||||||||||||||||||||||||    
T  6283245 aatgtatccaaacacaaatcacttttaat 6283217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 184 - 239
Target Start/End: Original strand, 34915141 - 34915197
Alignment:
Q  184 tcacatttacatgaatgtatccaa-cataaaacactttaccttcaactcacttttag 239  Q
    |||| ||||||||||||||| ||| |||||| || ||||||| ||||||||||||||    
T  34915141 tcacttttacatgaatgtattcaaacataaatcattttacctgcaactcacttttag 34915197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 184 - 239
Target Start/End: Original strand, 35961443 - 35961499
Alignment:
Q  184 tcacatttacatgaatgtatccaa-cataaaacactttaccttcaactcacttttag 239  Q
    |||| |||||||||||||||  || |||||| || ||||||||||||||||||||||    
T  35961443 tcacttttacatgaatgtatagaaacataaatcattttaccttcaactcacttttag 35961499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 7 - 67
Target Start/End: Complemental strand, 38797627 - 38797567
Alignment:
Q  7 aatgtatccaaacacaaatcacttttaattagaattacttttaactaaaatcaattctctc 67  Q
    ||||||| |||||| |||||||||||||| | | ||| ||||||| |||||||||| ||||    
T  38797627 aatgtatgcaaacataaatcacttttaatcaaatttatttttaaccaaaatcaattatctc 38797567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0168 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0168
Description:

Target: scaffold0168; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 31911 - 31974
Alignment:
Q  1 tacataaatgtatccaaacacaaatcacttttaattagaattacttttaactaaaatcaattct 64  Q
    |||||||||||||||||||||||| ||||| || || ||||||||| |||| ||||||||||||    
T  31911 tacataaatgtatccaaacacaaaccacttctagttggaattacttctaaccaaaatcaattct 31974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 169 - 239
Target Start/End: Complemental strand, 16972089 - 16972018
Alignment:
Q  169 aatttattgtttaaatcacatttacatgaatgta-tccaacataaaacactttaccttcaactcacttttag 239  Q
    ||||||||||| ||||||| |||||||||||||| || |||| ||| || ||||||||||||||||||||||    
T  16972089 aatttattgttcaaatcacttttacatgaatgtattcaaacacaaatcattttaccttcaactcacttttag 16972018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 11 - 65
Target Start/End: Complemental strand, 44141053 - 44140999
Alignment:
Q  11 tatccaaacacaaatcacttttaattagaattacttttaactaaaatcaattctc 65  Q
    ||||||||||||| ||||||||| | ||||| ||||||||| |||||||||||||    
T  44141053 tatccaaacacaattcacttttagtcagaatcacttttaaccaaaatcaattctc 44140999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 3 - 64
Target Start/End: Original strand, 26668634 - 26668695
Alignment:
Q  3 cataaatgtatccaaacacaaatcacttttaattagaattacttttaactaaaatcaattct 64  Q
    ||||||||||| ||||||||||| ||||||||  | ||||| ||||||| ||||||||||||    
T  26668634 cataaatgtatacaaacacaaatgacttttaaccaaaattatttttaacaaaaatcaattct 26668695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 17 - 86
Target Start/End: Original strand, 29512900 - 29512969
Alignment:
Q  17 aacacaaatcacttttaattagaattacttttaactaaaatcaattctctccaacgcacaaccaaacaca 86  Q
    ||||||||||| ||||| | | ||| ||||||||| |||||||||||||  || ||||||||||||||||    
T  29512900 aacacaaatcagttttagtcaaaatcacttttaaccaaaatcaattctccacaccgcacaaccaaacaca 29512969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 32101155 - 32101216
Alignment:
Q  1 tacataaatgtatccaaacacaaatcacttttaattagaattacttttaactaaaatcaatt 62  Q
    |||||||||||||||| ||||||||||||||| ||   ||||| ||||||| ||||||||||    
T  32101155 tacataaatgtatccacacacaaatcacttttgatcgtaattatttttaaccaaaatcaatt 32101216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 37684487 - 37684532
Alignment:
Q  1 tacataaatgtatccaaacacaaatcacttttaattagaattactt 46  Q
    ||||||||||||||||||||||||||||||||| | | ||||||||    
T  37684487 tacataaatgtatccaaacacaaatcacttttagtcaaaattactt 37684532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 13384651 - 13384595
Alignment:
Q  1 tacataaatgtatccaaacacaaatcacttttaattagaattacttttaactaaaat 57  Q
    ||||| ||| |||| |||||||||||||| ||||| ||||||||||||||| |||||    
T  13384651 tacatgaatatatcaaaacacaaatcactcttaatcagaattacttttaaccaaaat 13384595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 10 - 86
Target Start/End: Original strand, 19649229 - 19649305
Alignment:
Q  10 gtatccaaacacaaatcacttttaattagaattacttttaactaaaatcaattctctccaacgcacaaccaaacaca 86  Q
    ||||||||||| ||||||||||  |||  | | ||||||||| |||||||||| | |||| ||||||||||||||||    
T  19649229 gtatccaaacataaatcactttacattcaactcacttttaaccaaaatcaattttttccaccgcacaaccaaacaca 19649305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 169 - 239
Target Start/End: Original strand, 32927952 - 32928023
Alignment:
Q  169 aatttattgtttaaatcacatttacatgaatgtatcc-aacataaaacactttaccttcaactcacttttag 239  Q
    ||||||| ||| || |||| ||||||||||||||||| |||| ||| |||||| ||||||||||| ||||||    
T  32927952 aatttatagttcaactcacttttacatgaatgtatccaaacacaaatcactttgccttcaactcaattttag 32928023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 189 - 238
Target Start/End: Original strand, 10368045 - 10368095
Alignment:
Q  189 tttacatgaatgtatccaa-cataaaacactttaccttcaactcactttta 238  Q
    |||||||||||||||| || || ||| ||||||||||||||||||||||||    
T  10368045 tttacatgaatgtatctaaacacaaatcactttaccttcaactcactttta 10368095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 28725055 - 28724996
Alignment:
Q  1 tacataaatgtatccaaacacaaatcacttttaattagaattacttttaactaaaatcaa 60  Q
    |||||| ||||||| |||||||||| | ||||| ||||||||||||||||||||||||||    
T  28725055 tacatagatgtatctaaacacaaattatttttagttagaattacttttaactaaaatcaa 28724996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 177 - 239
Target Start/End: Original strand, 40491646 - 40491709
Alignment:
Q  177 gtttaaatcacatttacatgaatgtatccaaca-taaaacactttaccttcaactcacttttag 239  Q
    |||||| |||| ||||||||||||||||||| | |||| |||||||||||||||||||||||||    
T  40491646 gtttaactcacttttacatgaatgtatccaaaaataaatcactttaccttcaactcacttttag 40491709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 184 - 244
Target Start/End: Original strand, 45557440 - 45557501
Alignment:
Q  184 tcacatttacatgaatgtatccaa-cataaaacactttaccttcaactcacttttagacaga 244  Q
    |||| ||||||||||||||||||| || ||| ||||||||||||||||||||||||| ||||    
T  45557440 tcacttttacatgaatgtatccaaacacaaatcactttaccttcaactcacttttagtcaga 45557501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 189 - 244
Target Start/End: Original strand, 1442651 - 1442707
Alignment:
Q  189 tttacatgaatgtatcca-acataaaacactttaccttcaactcacttttagacaga 244  Q
    |||||||||||||||||| ||||||| |||||||||| |||||||||||||| ||||    
T  1442651 tttacatgaatgtatccatacataaaccactttacctgcaactcacttttagtcaga 1442707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 7 - 67
Target Start/End: Complemental strand, 40904025 - 40903966
Alignment:
Q  7 aatgtatccaaacacaaatcacttttaattagaattacttttaactaaaatcaattctctc 67  Q
    ||||||| ||||||||| ||||||||| ||| ||||||||||||| |||||||||||||||    
T  40904025 aatgtattcaaacacaa-tcacttttatttataattacttttaaccaaaatcaattctctc 40903966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 181 - 238
Target Start/End: Complemental strand, 40796002 - 40795944
Alignment:
Q  181 aaatcacatttacatgaatgtatccaa-cataaaacactttaccttcaactcactttta 238  Q
    ||||||| ||||||||||||||||||| |||||| |||||||||||||| ||| |||||    
T  40796002 aaatcacttttacatgaatgtatccaatcataaaccactttaccttcaattcattttta 40795944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 171 - 239
Target Start/End: Original strand, 27571924 - 27571993
Alignment:
Q  171 tttattgtttaaatcacatttacatgaatgtatccaa-cataaaacactttaccttcaactcacttttag 239  Q
    |||||| || || |||||||||||| ||||||||||| |||||| || |||||||| |||||||||||||    
T  27571924 tttattattcaactcacatttacataaatgtatccaaccataaatcattttacctttaactcacttttag 27571993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 173 - 237
Target Start/End: Complemental strand, 40561779 - 40561714
Alignment:
Q  173 tattgtttaaatcacatttacatgaatgtatcc-aacataaaacactttaccttcaactcactttt 237  Q
    ||||||| || |||| ||||||||||||||||| |||||||| |||||||| ||||||||| ||||    
T  40561779 tattgttcaactcacttttacatgaatgtatccaaacataaatcactttactttcaactcaatttt 40561714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 189 - 244
Target Start/End: Complemental strand, 33853489 - 33853433
Alignment:
Q  189 tttacatgaatgtatccaa-cataaaacactttaccttcaactcacttttagacaga 244  Q
    ||||||||||||||||||| |||||| ||||||| |||||||||||| |||| ||||    
T  33853489 tttacatgaatgtatccaaacataaatcactttagcttcaactcactcttagccaga 33853433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 4 - 67
Target Start/End: Original strand, 45719279 - 45719342
Alignment:
Q  4 ataaatgtatccaaacacaaatcacttttaattagaattacttttaactaaaatcaattctctc 67  Q
    ||||||||||||||||| |||| |||| |||| | ||||||||||||| || ||||||| ||||    
T  45719279 ataaatgtatccaaacaaaaattacttctaatcataattacttttaaccaagatcaattatctc 45719342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 184 - 244
Target Start/End: Original strand, 12306798 - 12306859
Alignment:
Q  184 tcacatttacatgaatgtatccaa-cataaaacactttaccttcaactcacttttagacaga 244  Q
    |||| ||||||||||| || |||| |||||| ||||||| ||||||||||||||||| ||||    
T  12306798 tcacttttacatgaatctagccaaacataaatcactttatcttcaactcacttttagccaga 12306859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 64
Target Start/End: Original strand, 31625532 - 31625581
Alignment:
Q  15 caaacacaaatcacttttaattagaattacttttaactaaaatcaattct 64  Q
    |||||||||||||||| |||| | ||| ||||||||| ||||||||||||    
T  31625532 caaacacaaatcacttataataaaaatgacttttaaccaaaatcaattct 31625581  T

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Target: scaffold0041 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 7 - 67
Target Start/End: Original strand, 45993 - 46052
Alignment:
Q  7 aatgtatccaaacacaaatcacttttaattagaattacttttaactaaaatcaattctctc 67  Q
    ||||||| ||||||||| ||||||||| ||| ||||||||||||| |||||||||||||||    
T  45993 aatgtattcaaacacaa-tcacttttatttataattacttttaaccaaaatcaattctctc 46052  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000005; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 7 - 64
Target Start/End: Original strand, 38265022 - 38265079
Alignment:
Q  7 aatgtatccaaacacaaatcacttttaattagaattacttttaactaaaatcaattct 64  Q
    ||||| |||||| |||||||||||||| |||||||| | |||||| ||||||||||||    
T  38265022 aatgtgtccaaaaacaaatcacttttatttagaattgcgtttaaccaaaatcaattct 38265079  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 169 - 244
Target Start/End: Complemental strand, 35139048 - 35138972
Alignment:
Q  169 aatttattgtttaaatcacatttacatgaatgtatcc-aacataaaacactttaccttcaactcacttttagacaga 244  Q
    ||||||||||| || |||| || | |||||||||||  |||||||| || ||||||||||||||| |||||||||||    
T  35139048 aatttattgttcaactcactttcatatgaatgtatctgaacataaatcattttaccttcaactcaattttagacaga 35138972  T

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Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 169 - 236
Target Start/End: Original strand, 37877118 - 37877186
Alignment:
Q  169 aatttattgtttaaatcacatttacatgaatgtatcc-aacataaaacactttaccttcaactcacttt 236  Q
    |||||||||||||| |||| |||| ||||||| |||| |||||||| |||| ||||||||||| |||||    
T  37877118 aatttattgtttaactcacttttatatgaatgaatccaaacataaaccactctaccttcaactgacttt 37877186  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 173 - 244
Target Start/End: Complemental strand, 117517 - 117445
Alignment:
Q  173 tattgtttaaatcacatttacatgaatgtatccaa-cataaaacactttaccttcaactcacttttagacaga 244  Q
    |||||||||| |||| |||||||  |||||||||| ||| || || |||||||||||||||||| ||| ||||    
T  117517 tattgtttaactcacttttacatagatgtatccaaacatgaatcattttaccttcaactcacttctagtcaga 117445  T

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Target: scaffold0361 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0361
Description:

Target: scaffold0361; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 169 - 232
Target Start/End: Complemental strand, 14139 - 14075
Alignment:
Q  169 aatttattgtttaaatcacatttacatgaatgtatccaa-cataaaacactttaccttcaactca 232  Q
    |||||||| || || |||| || |||||||||||||||| |||||| ||||||||||||||||||    
T  14139 aatttatttttcaactcactttcacatgaatgtatccaaacataaatcactttaccttcaactca 14075  T

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Target: scaffold0009 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 43 - 86
Target Start/End: Complemental strand, 199402 - 199359
Alignment:
Q  43 acttttaactaaaatcaattctctccaacgcacaaccaaacaca 86  Q
    ||||||||| |||||||||||| |||| ||||||||||||||||    
T  199402 acttttaaccaaaatcaattctttccaccgcacaaccaaacaca 199359  T

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