View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7708A_high_48 (Length: 223)
Name: NF7708A_high_48
Description: NF7708A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7708A_high_48 |
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Alignment Details
Target: chr2 (Bit Score: 164; Significance: 8e-88; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 164; E-Value: 8e-88
Query Start/End: Original strand, 23 - 186
Target Start/End: Original strand, 33430392 - 33430555
Alignment:
| Q |
23 |
atatatatgtgtgtcttaagatcatcacatatatcaaacacatcacacacaaaatataagacatttaaactgcataagtgatcgtcaatcatttaaactt |
122 |
Q |
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| T |
33430392 |
atatatatgtgtgtcttaagatcatcacatatatcaaacacatcacacacaaaatataagacatttaaactgcataagtgatcgtcaatcatttaaactt |
33430491 |
T |
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| Q |
123 |
cactatcattaagcgatggagaagaaatcaatagctggcttgtgcttactcttcctcgttctct |
186 |
Q |
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| T |
33430492 |
cactatcattaagcgatggagaagaaatcaatagctggcttgtgcttactcttcctcgttctct |
33430555 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 126 - 186
Target Start/End: Original strand, 33435274 - 33435334
Alignment:
| Q |
126 |
tatcattaagcgatggagaagaaatcaatagctggcttgtgcttactcttcctcgttctct |
186 |
Q |
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| T |
33435274 |
tatcactaagctatggagaagaaaacactagcaggcttatgcttcctcttcctcgttctct |
33435334 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 132 - 186
Target Start/End: Complemental strand, 11127657 - 11127603
Alignment:
| Q |
132 |
taagcgatggagaagaaatcaatagctggcttgtgcttactcttcctcgttctct |
186 |
Q |
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| T |
11127657 |
taagccatggaaaagaaatcactagttgtcttgtgcttcctcttcctcgttctct |
11127603 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 138 - 186
Target Start/End: Original strand, 11384215 - 11384263
Alignment:
| Q |
138 |
atggagaagaaatcaatagctggcttgtgcttactcttcctcgttctct |
186 |
Q |
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| T |
11384215 |
atggagaagaaatcactaccaggcttgtgtttcctcttcctcgttctct |
11384263 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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