View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7708A_high_5 (Length: 568)
Name: NF7708A_high_5
Description: NF7708A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7708A_high_5 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 339; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 28 - 390
Target Start/End: Original strand, 6136816 - 6137178
Alignment:
| Q |
28 |
ctcaattctgttcatattatttgttttattatgttgttcaagaattttgttaataagtatgatgaaaccaagttccaaccatggttcgaactcaggtact |
127 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
6136816 |
ctcaattctgttcatattatttgttttattatgttgttcatgaatttttttaataagtatgatgaaaccaagttccaaccatggatcgaactcaggtact |
6136915 |
T |
|
| Q |
128 |
tccaatagaacccgaatacttctatcgattcgacattagcagaacgctcattaaccaattgagtcccaaaagttggttttaatgttttgatattagtata |
227 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6136916 |
tccaatagaacccgaatacttctatcgattcgacattagcagaacgctccttaaccaattgagtcccaaaagttggttttaatgttttgatattagtata |
6137015 |
T |
|
| Q |
228 |
tgtaaaatttgttcatgttggttttaattcttgtaatgtatgaactatattacttttaggactaaacttagataaagcgctatccatattgttctaatta |
327 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6137016 |
tgtaaaatttgttcatgttggttttaattcttgtaatgtatgaactatattaattttaggactaaacttagataaagcgctatccatattgttctaatta |
6137115 |
T |
|
| Q |
328 |
ttcctctcaagaagacattttttcacaccctttcaaaattgttcctcacataaaggttaactc |
390 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
6137116 |
ttcctctcaagaagacattttttcacaccctttcagaattgttcctcacataaaggttaactc |
6137178 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 431 - 568
Target Start/End: Original strand, 6137219 - 6137356
Alignment:
| Q |
431 |
tgatcaaggttatagtaataagacactatttgaaaagagtaagatgatgtgattgtgatattaagaggtcaaacacgtaagtattaccttaatttcttta |
530 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6137219 |
tgatcaaggttatagtaataagacaatatttgaaaagagtaagatgatgtgattgtgatattaagaggtcaaacacgtaagtattaccttaatttcttta |
6137318 |
T |
|
| Q |
531 |
ctgcgagatgattctacatcaaaacctcctccagtata |
568 |
Q |
| |
|
|||||||| |||||||||||| |||||||||||||||| |
|
|
| T |
6137319 |
ctgcgagacgattctacatcagaacctcctccagtata |
6137356 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 211 - 288
Target Start/End: Original strand, 6174926 - 6175003
Alignment:
| Q |
211 |
gttttgatattagtatatgtaaaatttgttcatgttggttttaattcttgtaatgtatgaactatattacttttagga |
288 |
Q |
| |
|
||||||| ||||||||||||| |||||||||||||||||| ||| |||||||| ||||||| ||||| |||||||| |
|
|
| T |
6174926 |
gttttgaatttagtatatgtaatatttgttcatgttggtttcaatacttgtaatatatgaacagtattaattttagga |
6175003 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University