View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7708A_high_6 (Length: 488)

Name: NF7708A_high_6
Description: NF7708A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7708A_high_6
NF7708A_high_6
[»] chr6 (26 HSPs)
chr6 (1-488)||(25195633-25196119)
chr6 (171-272)||(4910906-4911009)
chr6 (161-272)||(16540105-16540218)
chr6 (117-243)||(31305777-31305905)
chr6 (167-276)||(6654070-6654181)
chr6 (148-273)||(34620883-34621010)
chr6 (148-273)||(34748320-34748447)
chr6 (193-244)||(17225878-17225929)
chr6 (172-243)||(1485131-1485204)
chr6 (167-251)||(25195346-25195432)
chr6 (117-249)||(46218-46354)
chr6 (167-250)||(3482066-3482151)
chr6 (174-243)||(2234542-2234614)
chr6 (201-257)||(7952725-7952781)
chr6 (50-94)||(33141805-33141849)
chr6 (191-243)||(34027423-34027475)
chr6 (223-274)||(765424-765475)
chr6 (122-217)||(3289798-3289894)
chr6 (190-272)||(5724635-5724717)
chr6 (167-245)||(434217-434297)
chr6 (190-259)||(10874505-10874574)
chr6 (197-254)||(19601457-19601514)
chr6 (167-218)||(2748046-2748098)
chr6 (167-241)||(6653843-6653921)
chr6 (57-97)||(18690622-18690662)
chr6 (190-274)||(26280601-26280685)
[»] chr8 (17 HSPs)
chr8 (117-270)||(32927892-32928047)
chr8 (117-274)||(26100076-26100235)
chr8 (193-274)||(15677823-15677905)
chr8 (167-257)||(35495003-35495095)
chr8 (190-272)||(13384659-13384741)
chr8 (167-257)||(4662883-4662975)
chr8 (167-275)||(37684400-37684510)
chr8 (173-274)||(18355836-18355937)
chr8 (193-272)||(38868496-38868575)
chr8 (131-257)||(16972008-16972136)
chr8 (201-274)||(32994258-32994331)
chr8 (171-270)||(32767387-32767490)
chr8 (117-215)||(18356020-18356119)
chr8 (167-213)||(32101130-32101178)
chr8 (167-257)||(38335841-38335933)
chr8 (194-272)||(44141059-44141137)
chr8 (195-231)||(33114793-33114829)
[»] chr1 (22 HSPs)
chr1 (118-253)||(7524130-7524267)
chr1 (190-274)||(11049246-11049330)
chr1 (167-257)||(30557517-30557607)
chr1 (167-257)||(1514356-1514448)
chr1 (167-272)||(28083868-28083975)
chr1 (171-249)||(3016183-3016263)
chr1 (167-274)||(6021800-6021905)
chr1 (190-274)||(7790647-7790731)
chr1 (190-274)||(28287341-28287425)
chr1 (190-254)||(30850404-30850468)
chr1 (50-94)||(32088671-32088715)
chr1 (167-207)||(52059391-52059431)
chr1 (193-260)||(3416090-3416157)
chr1 (169-244)||(10324920-10324997)
chr1 (195-260)||(40662991-40663054)
chr1 (172-242)||(213522-213594)
chr1 (167-275)||(2099667-2099778)
chr1 (171-272)||(48548998-48549099)
chr1 (213-254)||(51500862-51500903)
chr1 (426-470)||(2099659-2099703)
chr1 (171-244)||(34915092-34915167)
chr1 (190-230)||(38797634-38797674)
[»] chr4 (21 HSPs)
chr4 (169-275)||(32818352-32818460)
chr4 (167-241)||(35065092-35065168)
chr4 (171-272)||(8604606-8604709)
chr4 (167-274)||(21691192-21691301)
chr4 (160-276)||(31012711-31012830)
chr4 (174-257)||(16551970-16552053)
chr4 (131-182)||(20712758-20712809)
chr4 (200-274)||(30357508-30357582)
chr4 (195-249)||(42971912-42971966)
chr4 (160-251)||(45011893-45011986)
chr4 (160-274)||(1616387-1616502)
chr4 (190-243)||(4243414-4243467)
chr4 (167-257)||(53713541-53713633)
chr4 (193-257)||(49138771-49138835)
chr4 (43-94)||(29728938-29728989)
chr4 (190-249)||(52965859-52965918)
chr4 (190-272)||(39386631-39386713)
chr4 (173-243)||(10185221-10185293)
chr4 (179-272)||(9064229-9064324)
chr4 (193-253)||(27967431-27967491)
chr4 (168-241)||(45694643-45694718)
[»] chr7 (11 HSPs)
chr7 (117-244)||(40491604-40491733)
chr7 (190-276)||(41386820-41386906)
chr7 (131-274)||(45557361-45557506)
chr7 (140-274)||(38123619-38123755)
chr7 (169-250)||(42816450-42816533)
chr7 (194-250)||(45997707-45997764)
chr7 (174-243)||(27571889-27571960)
chr7 (144-272)||(29842087-29842214)
chr7 (52-94)||(12306679-12306721)
chr7 (196-273)||(31625420-31625495)
chr7 (167-217)||(32295237-32295289)
[»] chr3 (15 HSPs)
chr3 (117-249)||(31708169-31708303)
chr3 (189-253)||(32523344-32523408)
chr3 (171-276)||(40147834-40147941)
chr3 (190-274)||(52364047-52364131)
chr3 (117-249)||(31013039-31013173)
chr3 (176-243)||(46853523-46853592)
chr3 (180-241)||(4526161-4526224)
chr3 (190-250)||(50550594-50550654)
chr3 (160-257)||(52141221-52141320)
chr3 (117-244)||(37334964-37335093)
chr3 (117-243)||(35264341-35264469)
chr3 (192-273)||(44771691-44771772)
chr3 (50-94)||(2410028-2410072)
chr3 (197-249)||(31492788-31492839)
chr3 (171-244)||(41596133-41596208)
[»] chr2 (16 HSPs)
chr2 (117-239)||(11759789-11759913)
chr2 (141-275)||(16518774-16518909)
chr2 (167-274)||(33019136-33019245)
chr2 (167-272)||(42740975-42741081)
chr2 (167-241)||(33502266-33502339)
chr2 (168-241)||(32596020-32596095)
chr2 (173-270)||(42982544-42982643)
chr2 (167-243)||(22536025-22536103)
chr2 (167-274)||(43501121-43501228)
chr2 (167-253)||(33047562-33047650)
chr2 (171-243)||(44439281-44439355)
chr2 (167-258)||(11504042-11504134)
chr2 (45-94)||(1101941-1101990)
chr2 (167-249)||(5533011-5533095)
chr2 (167-257)||(13912800-13912892)
chr2 (190-239)||(26032040-26032089)
[»] scaffold0361 (1 HSPs)
scaffold0361 (116-244)||(14043-14173)
[»] chr5 (12 HSPs)
chr5 (168-272)||(6951286-6951392)
chr5 (190-272)||(9818732-9818815)
chr5 (167-272)||(38845441-38845549)
chr5 (166-272)||(18851061-18851169)
chr5 (191-274)||(22572410-22572493)
chr5 (190-274)||(42858104-42858188)
chr5 (131-244)||(18637310-18637424)
chr5 (50-97)||(38592173-38592220)
chr5 (195-249)||(370743-370797)
chr5 (117-272)||(14299328-14299481)
chr5 (190-251)||(28110443-28110504)
chr5 (190-271)||(22226241-22226322)
[»] scaffold0168 (1 HSPs)
scaffold0168 (161-257)||(31839-31940)


Alignment Details
Target: chr6 (Bit Score: 456; Significance: 0; HSPs: 26)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 456; E-Value: 0
Query Start/End: Original strand, 1 - 488
Target Start/End: Complemental strand, 25196119 - 25195633
Alignment:
Q  1 cttatgaagttagttatatcatttatgttcagtttcacattcaggagccaaaatttattttgataggtttggttgctctcaagtagaattgattctagta 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25196119 cttatgaagttagttatatcatttatgttcagtttcacattcaggagccaaaatttattttgataggtttggttgctctcaagtagaattgattctagta 25196020  T
Q  101 ttgattatttgtatgtttgattctgtaaatttgattccaactaaaaatgagttgagggcaaagttgtttgtgtttggatacatttatgtaagtgagttga 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25196019 ttgattatttgtatgtttgattctgtaaatttgattccaactaaaaatgagttgagggcaaagttgtttgtgtttggatacatttatgtaagtgagttga 25195920  T
Q  201 actataaatttgtgtgtacaattcaattctagaatcaaaagctataaatcctagctttaatcagaatcaattctgatttctgaaggcaaaatcaatttta 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||    
T  25195919 actataaatttgtgtgtacaattcaattctagaatcaaaagctataaatcctagttttaattagaatcaattctgatttctgaaggcaaaatcaatttta 25195820  T
Q  301 ctagtactcaaaaacaatcaaaacatgtcagaatcaattttggcccctctagtaatggagcaaacttaagtttgaatttgtgtgtttagttatgcagaat 400  Q
    ||| ||||||||||||| | |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||    
T  25195819 ctattactcaaaaacaa-ccaaacatgtcagaatcaattttggcccctctagtagtggagcaaacttaagtttgaatttgtgtgtttagttctgcagaat 25195721  T
Q  401 tgattttgtaaagttgattttagtcaaaagtggtttgtgttttgatacattcacataagaaatgagttgaacaatgaattttagtatg 488  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25195720 tgattttgtaaagttgattttagtcaaaagtggtttgtgttttgatacattcacataagaaatgagttgaacaatgaattttagtatg 25195633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 171 - 272
Target Start/End: Complemental strand, 4911009 - 4910906
Alignment:
Q  171 tgtttggatacatttatgtaa--gtgagttgaactataaatttgtgtgtacaattcaattctagaatcaaaagctataaatcctagctttaatcagaatc 268  Q
    |||||||||||||||||||||  |||||| ||||||||||||||| |||  || |||||||||||||||||||||| ||||| |||||| ||  ||||||    
T  4911009 tgtttggatacatttatgtaaaagtgagtcgaactataaatttgtatgtgaaaatcaattctagaatcaaaagctacaaatcatagcttcaagtagaatc 4910910  T
Q  269 aatt 272  Q
    ||||    
T  4910909 aatt 4910906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 161 - 272
Target Start/End: Complemental strand, 16540218 - 16540105
Alignment:
Q  161 aagttgtttgtgtttggatacatttatgtaa--gtgagttgaactataaatttgtgtgtacaattcaattctagaatcaaaagctataaatcctagcttt 258  Q
    |||| ||||||||||||||||||| ||||||  ||||||| |||||||||| |||  ||  || ||||||| | |||||||||||| ||||||||||||     
T  16540218 aagtggtttgtgtttggatacattgatgtaaaagtgagtttaactataaatatgtaagtgaaactcaattcaataatcaaaagctacaaatcctagcttc 16540119  T
Q  259 aatcagaatcaatt 272  Q
    ||  ||||||||||    
T  16540118 aagtagaatcaatt 16540105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 117 - 243
Target Start/End: Original strand, 31305777 - 31305905
Alignment:
Q  117 ttgattctgtaaatttgattccaactaaaaatgagttgagggcaaagttgtttgtgtttggatacatttatgtaa--gtgagttgaactataaatttgtg 214  Q
    |||||| |||||| |||||||| |||||||  | ||||| || ||| |  ||| |||||||||| ||| ||||||  ||||||||| | ||||||||| |    
T  31305777 ttgattttgtaaaattgattccgactaaaagggtgttgaaggtaaaatcatttatgtttggatatattaatgtaaaagtgagttgatcaataaatttgag 31305876  T
Q  215 tgtacaattcaattctagaatcaaaagct 243  Q
    |||| || |||||||||||||||||||||    
T  31305877 tgtataaatcaattctagaatcaaaagct 31305905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 167 - 276
Target Start/End: Original strand, 6654070 - 6654181
Alignment:
Q  167 tttgtgtttggatacatttatgta--agtgagttgaactataaatttgtgtgtacaattcaattctagaatcaaaagctataaatcctagctttaatcag 264  Q
    ||||||||||||| | ||||||||  ||||  ||||||||||||||| |||||  || |||| |||||||| |||||||| |||||||||||| ||  ||    
T  6654070 tttgtgtttggattcgtttatgtagaagtggtttgaactataaatttctgtgtgaaaatcaaatctagaattaaaagctacaaatcctagcttcaagtag 6654169  T
Q  265 aatcaattctga 276  Q
    ||| ||||||||    
T  6654170 aattaattctga 6654181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 148 - 273
Target Start/End: Complemental strand, 34621010 - 34620883
Alignment:
Q  148 tgagttgagggcaaagttgtttgtgtttggatacatttatgtaa--gtgagttgaactataaatttgtgtgtacaattcaattctagaatcaaaagctat 245  Q
    |||||||| || |||||  ||| |||||||||||||||||||||  ||||||||||  ||||||||  ||||| || ||||||||||||||| |||||||    
T  34621010 tgagttgaaggtaaagtgatttatgtttggatacatttatgtaaaagtgagttgaaaaataaattttagtgtaaaaatcaattctagaatcagaagctat 34620911  T
Q  246 aaatcctagctttaatcagaatcaattc 273  Q
     | | ||||||| |   |||||||||||    
T  34620910 gatttctagcttcatgtagaatcaattc 34620883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 148 - 273
Target Start/End: Complemental strand, 34748447 - 34748320
Alignment:
Q  148 tgagttgagggcaaagttgtttgtgtttggatacatttatgtaa--gtgagttgaactataaatttgtgtgtacaattcaattctagaatcaaaagctat 245  Q
    |||||||| || |||||  ||| |||||||||||||||||||||  ||||||||||  ||||||||  ||||| || ||||||||||||||| |||||||    
T  34748447 tgagttgaaggtaaagtgatttatgtttggatacatttatgtaaaagtgagttgaaaaataaattttagtgtaaaaatcaattctagaatcagaagctat 34748348  T
Q  246 aaatcctagctttaatcagaatcaattc 273  Q
     | | ||||||| |   |||||||||||    
T  34748347 gatttctagcttcatgtagaatcaattc 34748320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 193 - 244
Target Start/End: Complemental strand, 17225929 - 17225878
Alignment:
Q  193 tgagttgaactataaatttgtgtgtacaattcaattctagaatcaaaagcta 244  Q
    ||||||||||||||||||||| |||| || ||||||||||||||||||||||    
T  17225929 tgagttgaactataaatttgtatgtaaaaatcaattctagaatcaaaagcta 17225878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 172 - 243
Target Start/End: Original strand, 1485131 - 1485204
Alignment:
Q  172 gtttggatacatttatgtaa--gtgagttgaactataaatttgtgtgtacaattcaattctagaatcaaaagct 243  Q
    ||||||||||| ||||||||  ||||||||||| ||||||||| ||||  || |||||||||||||||||||||    
T  1485131 gtttggatacacttatgtaaaagtgagttgaacaataaatttgagtgttaaaatcaattctagaatcaaaagct 1485204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 167 - 251
Target Start/End: Original strand, 25195346 - 25195432
Alignment:
Q  167 tttgtgtttggatacatttatgt--aagtgagttgaactataaatttgtgtgtacaattcaattctagaatcaaaagctataaatcc 251  Q
    |||||||||||||||||||||||  |||||||||||| | ||||||||||| |  || |||||| |||||| |||| ||| ||||||    
T  25195346 tttgtgtttggatacatttatgtaaaagtgagttgaattgtaaatttgtgtatgaaaatcaattatagaatgaaaaactacaaatcc 25195432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 117 - 249
Target Start/End: Original strand, 46218 - 46354
Alignment:
Q  117 ttgattctgtaaatttgattccaactaaaaatgagttgagggcaaagttgtttgtgtttggatacatttatg--taagtgagttgaactat--aaatttg 212  Q
    ||||||||||||| ||||||| |||||||| |||||||     |||||| ||||||||||||||||||  ||   |||||||||||| |||  |||||||    
T  46218 ttgattctgtaaaattgattctaactaaaagtgagttgcaattaaagttatttgtgtttggatacattcgtggaaaagtgagttgaattataaaaatttg 46317  T
Q  213 tgtgtacaattcaattctagaatcaaaagctataaat 249  Q
    | |||   | || ||||||||||||||||||| ||||    
T  46318 tttgttagaatctattctagaatcaaaagctacaaat 46354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 167 - 250
Target Start/End: Complemental strand, 3482151 - 3482066
Alignment:
Q  167 tttgtgtttggatacatttatgtaa--gtgagttgaactataaatttgtgtgtacaattcaattctagaatcaaaagctataaatc 250  Q
    |||||||||| ||||||| ||||||  || |||||||||||||| ||||||||  || ||||||||| ||||||| |||| |||||    
T  3482151 tttgtgtttgaatacattcatgtaaaagtaagttgaactataaacttgtgtgtgaaaatcaattctaaaatcaaaggctacaaatc 3482066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 174 - 243
Target Start/End: Complemental strand, 2234614 - 2234542
Alignment:
Q  174 ttggatacatttatgtaa--gtgagttgaacta-taaatttgtgtgtacaattcaattctagaatcaaaagct 243  Q
    ||||||||||||||||||  ||||||||||| | |||||||| ||||  || |||||||||||||||||||||    
T  2234614 ttggatacatttatgtaatagtgagttgaacaaataaatttgagtgttaaaatcaattctagaatcaaaagct 2234542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 201 - 257
Target Start/End: Original strand, 7952725 - 7952781
Alignment:
Q  201 actataaatttgtgtgtacaattcaattctagaatcaaaagctataaatcctagctt 257  Q
    |||||||||||||||||  ||  ||||||||||||||||||||| ||||||| ||||    
T  7952725 actataaatttgtgtgtgaaacccaattctagaatcaaaagctacaaatcctcgctt 7952781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 50 - 94
Target Start/End: Complemental strand, 33141849 - 33141805
Alignment:
Q  50 aaaatttattttgataggtttggttgctctcaagtagaattgatt 94  Q
    |||||| ||||||||| ||||||||||||||||||| ||||||||    
T  33141849 aaaattgattttgatatgtttggttgctctcaagtataattgatt 33141805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 191 - 243
Target Start/End: Original strand, 34027423 - 34027475
Alignment:
Q  191 agtgagttgaactataaatttgtgtgtacaattcaattctagaatcaaaagct 243  Q
    |||||||||||  ||||||||| ||||| || |||||||||||||||||||||    
T  34027423 agtgagttgaataataaatttgagtgtaaaaatcaattctagaatcaaaagct 34027475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 223 - 274
Target Start/End: Original strand, 765424 - 765475
Alignment:
Q  223 tcaattctagaatcaaaagctataaatcctagctttaatcagaatcaattct 274  Q
    |||||||||||||||||||||| ||||| |||||| ||  ||||||||||||    
T  765424 tcaattctagaatcaaaagctacaaatcatagcttcaagtagaatcaattct 765475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 122 - 217
Target Start/End: Complemental strand, 3289894 - 3289798
Alignment:
Q  122 tctgtaaatttgattccaactaaaaatgagttgagggcaaagttgtttgtgtttggatacatttatgtaa--gtgagttgaactataaatttgtgtgt 217  Q
    |||||||| |||||| | ||| ||| |||||||  |  |||||  |||||||||||||||||| ||||||  |||||||||| |||||||||||||||    
T  3289894 tctgtaaaattgatttcgacttaaagtgagttgcagataaagtgatttgtgtttggatacatt-atgtaaaagtgagttgaattataaatttgtgtgt 3289798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 190 - 272
Target Start/End: Original strand, 5724635 - 5724717
Alignment:
Q  190 aagtgagttgaactataaatttgtgtgtacaattcaattctagaatcaaaagctataaatcctagctttaatcagaatcaatt 272  Q
    ||||||||| ||  ||| ||||||||||| || |||||| |||||| ||||| || |||||||||||| ||  ||||||||||    
T  5724635 aagtgagttaaatgatatatttgtgtgtaaaaatcaattatagaataaaaagttacaaatcctagcttcaagtagaatcaatt 5724717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 167 - 245
Target Start/End: Original strand, 434217 - 434297
Alignment:
Q  167 tttgtgtttggatacatttatgtaa--gtgagttgaactataaatttgtgtgtacaattcaattctagaatcaaaagctat 245  Q
    |||||||||||||| |||  |||||  |||||||||| | ||||||| ||| || || ||||||||| |||||||||||||    
T  434217 tttgtgtttggatatattcgtgtaaaagtgagttgaaatttaaatttatgtataaaaatcaattctaaaatcaaaagctat 434297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 190 - 259
Target Start/End: Complemental strand, 10874574 - 10874505
Alignment:
Q  190 aagtgagttgaactataaatttgtgtgtacaattcaattctagaatcaaaagctataaatcctagcttta 259  Q
    |||||||||||||  ||| ||||  |||| || ||||||||||||||||||||| ||| | |||||||||    
T  10874574 aagtgagttgaacactaagtttgaatgtaaaaatcaattctagaatcaaaagctctaatttctagcttta 10874505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 197 - 254
Target Start/End: Original strand, 19601457 - 19601514
Alignment:
Q  197 ttgaactataaatttgtgtgtacaattcaattctagaatcaaaagctataaatcctag 254  Q
    ||||||||||||||| | |||| || ||| || ||||||||||||||| |||||||||    
T  19601457 ttgaactataaatttatttgtaaaaatcagttatagaatcaaaagctacaaatcctag 19601514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 167 - 218
Target Start/End: Complemental strand, 2748098 - 2748046
Alignment:
Q  167 tttgtgtttggatacatttatgtaa-gtgagttgaactataaatttgtgtgta 218  Q
    |||||||||||||| |||| | ||| |||| ||||||||||||||||||||||    
T  2748098 tttgtgtttggatagatttgtataaagtgaattgaactataaatttgtgtgta 2748046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 167 - 241
Target Start/End: Complemental strand, 6653921 - 6653843
Alignment:
Q  167 tttgtgtttggatacatt--tatgtaa--gtgagttgaactataaatttgtgtgtacaattcaattctagaatcaaaag 241  Q
    |||||||||||||||| |  |||||||  ||||||| |||||||||||||  |||  || |||||||||||||||||||    
T  6653921 tttgtgtttggatacaatcatatgtaaaagtgagttaaactataaatttgcatgtgaaactcaattctagaatcaaaag 6653843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 57 - 97
Target Start/End: Original strand, 18690622 - 18690662
Alignment:
Q  57 attttgataggtttggttgctctcaagtagaattgattcta 97  Q
    ||||||| | ||||||||||| |||||||||||||||||||    
T  18690622 attttgacatgtttggttgctttcaagtagaattgattcta 18690662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 190 - 274
Target Start/End: Complemental strand, 26280685 - 26280601
Alignment:
Q  190 aagtgagttgaactataaatttgtgtgtacaattcaattctagaatcaaaagctataaatcctagctttaatcagaatcaattct 274  Q
    ||||||||| ||||||||||||||  ||| || |||||| | ||||||||| ||| |||| ||||||| ||   |||||||||||    
T  26280685 aagtgagtttaactataaatttgtacgtaaaaatcaattttggaatcaaaaactacaaattctagcttcaagtggaatcaattct 26280601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 77; Significance: 2e-35; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 117 - 270
Target Start/End: Complemental strand, 32928047 - 32927892
Alignment:
Q  117 ttgattctgtaaatttgattccaactaaaaatgagttgagggcaaagttgtttgtgtttggatacatttatgtaa--gtgagttgaactataaatttgtg 214  Q
    |||||| |||||| |||||||  ||||||| |||||||| ||||||||  |||||||||||||||||| ||||||  |||||||||||||||||||||||    
T  32928047 ttgattatgtaaaattgattcttactaaaattgagttgaaggcaaagtgatttgtgtttggatacattcatgtaaaagtgagttgaactataaatttgtg 32927948  T
Q  215 tgtacaattcaattctagaatcaaaagctataaatcctagctttaatcagaatcaa 270  Q
    |||| || | ||||||| |||||||||||| |||||||||||| ||  ||||||||    
T  32927947 tgtaaaaatgaattctataatcaaaagctacaaatcctagcttcaagtagaatcaa 32927892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 117 - 274
Target Start/End: Original strand, 26100076 - 26100235
Alignment:
Q  117 ttgattctgtaaatttgattccaactaaaaatgagttgagggcaaagttgtttgtgtttggatacatttatgtaa--gtgagttgaactataaatttgtg 214  Q
    |||||| |||||| |||||||  |||||||| ||||||| || |||| | ||||||||||||| |||||||||||  ||||||||||| |||||||||||    
T  26100076 ttgattatgtaaaattgattctgactaaaaacgagttgaaggtaaagctatttgtgtttggatgcatttatgtaaaagtgagttgaaccataaatttgtg 26100175  T
Q  215 tgtacaattcaattctagaatcaaaagctataaatcctagctttaatcagaatcaattct 274  Q
    |||| || |||||| ||||||||||||||| |||||||||||| ||  |||| |||||||    
T  26100176 tgtaaaaatcaattatagaatcaaaagctacaaatcctagcttcaaatagaaccaattct 26100235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 193 - 274
Target Start/End: Original strand, 15677823 - 15677905
Alignment:
Q  193 tgagttgaactataaatttgtgtgtacaat-tcaattctagaatcaaaagctataaatcctagctttaatcagaatcaattct 274  Q
    |||||||||||||||||||||||||| ||  ||||||||| ||||||||||||||||||||||||| ||  ||||||||||||    
T  15677823 tgagttgaactataaatttgtgtgtaaaaaatcaattctataatcaaaagctataaatcctagcttcaagtagaatcaattct 15677905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 167 - 257
Target Start/End: Complemental strand, 35495095 - 35495003
Alignment:
Q  167 tttgtgtttggatacatttatgtaa--gtgagttgaactataaatttgtgtgtacaattcaattctagaatcaaaagctataaatcctagctt 257  Q
    |||||||||||||| ||| ||||||  || |||||||||||| ||||||||||| ||  ||||||||||||||||||||| ||||||||||||    
T  35495095 tttgtgtttggatatattcatgtaaaagtaagttgaactatagatttgtgtgtaaaaaacaattctagaatcaaaagctacaaatcctagctt 35495003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 190 - 272
Target Start/End: Original strand, 13384659 - 13384741
Alignment:
Q  190 aagtgagttgaactataaatttgtgtgtacaattcaattctagaatcaaaagctataaatcctagctttaatcagaatcaatt 272  Q
    ||||||||||||||||||||||||||||  || |||||||||||||||||||||| ||||  |||||| ||  ||||||||||    
T  13384659 aagtgagttgaactataaatttgtgtgtgaaaatcaattctagaatcaaaagctacaaattttagcttcaaatagaatcaatt 13384741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 167 - 257
Target Start/End: Original strand, 4662883 - 4662975
Alignment:
Q  167 tttgtgtttggatacatttatgtaa--gtgagttgaactataaatttgtgtgtacaattcaattctagaatcaaaagctataaatcctagctt 257  Q
    |||||||||||||||||| | | ||  | ||||||||||||| ||||||||||| || |||||||||||| ||||||||| ||||||||||||    
T  4662883 tttgtgtttggatacattcacggaaaagcgagttgaactatacatttgtgtgtaaaaatcaattctagaaacaaaagctacaaatcctagctt 4662975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 167 - 275
Target Start/End: Complemental strand, 37684510 - 37684400
Alignment:
Q  167 tttgtgtttggatacatttatgtaa--gtgagttgaactataaatttgtgtgtacaattcaattctagaatcaaaagctataaatcctagctttaatcag 264  Q
    |||||||||||||||||||||||||  |||||||||| ||||||||| ||  |  || |||||| ||||||||||||| | |||||||| ||| ||  ||    
T  37684510 tttgtgtttggatacatttatgtaaaagtgagttgaattataaatttttgcattaaaatcaattttagaatcaaaagccacaaatcctaacttcaagtag 37684411  T
Q  265 aatcaattctg 275  Q
    |||||||||||    
T  37684410 aatcaattctg 37684400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 173 - 274
Target Start/End: Original strand, 18355836 - 18355937
Alignment:
Q  173 tttggatacatttatgtaa--gtgagttgaactataaatttgtgtgtacaattcaattctagaatcaaaagctataaatcctagctttaatcagaatcaa 270  Q
    ||||||||||||| |||||  | |||||||||| |||||||||||  | || |||||| ||||||||||||  | |||||||||||| ||||||||||||    
T  18355836 tttggatacatttgtgtaaaagggagttgaactttaaatttgtgt--aaaaatcaattttagaatcaaaagacacaaatcctagcttcaatcagaatcaa 18355933  T
Q  271 ttct 274  Q
    ||||    
T  18355934 ttct 18355937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 193 - 272
Target Start/End: Complemental strand, 38868575 - 38868496
Alignment:
Q  193 tgagttgaactataaatttgtgtgtacaattcaattctagaatcaaaagctataaatcctagctttaatcagaatcaatt 272  Q
    |||||||||||||||||||||||||  || |||||| ||||| ||||||||| ||||| |||||| ||  ||||||||||    
T  38868575 tgagttgaactataaatttgtgtgtgaaaatcaattatagaaccaaaagctacaaatcttagcttcaagtagaatcaatt 38868496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 131 - 257
Target Start/End: Original strand, 16972008 - 16972136
Alignment:
Q  131 ttgattccaactaaaaatgagttgagggcaaagttgtttgtgtttggatacatttatgtaa--gtgagttgaactataaatttgtgtgtacaattcaatt 228  Q
    |||||||  ||||||| |||||||| || ||| |  |||||||||| ||||||| ||||||  |||| |||||| |||||||||||| || || ||||||    
T  16972008 ttgattcagactaaaagtgagttgaaggtaaaatgatttgtgtttgaatacattcatgtaaaagtgatttgaacaataaatttgtgtttaaaaatcaatt 16972107  T
Q  229 ctagaatcaaaagctataaatcctagctt 257  Q
    ||| ||| |||| ||| |||| |||||||    
T  16972108 ctaaaattaaaaactacaaattctagctt 16972136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 201 - 274
Target Start/End: Original strand, 32994258 - 32994331
Alignment:
Q  201 actataaatttgtgtgtacaattcaattctagaatcaaaagctataaatcctagctttaatcagaatcaattct 274  Q
    ||||||||||||||| || || ||||||||||| |||||||||| ||||| |||||| ||  ||||||||||||    
T  32994258 actataaatttgtgtataaaaatcaattctagactcaaaagctagaaatcatagcttcaagtagaatcaattct 32994331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 171 - 270
Target Start/End: Complemental strand, 32767490 - 32767387
Alignment:
Q  171 tgtttggatacatttatgt----aagtgagttgaactataaatttgtgtgtacaattcaattctagaatcaaaagctataaatcctagctttaatcagaa 266  Q
    |||||||||||||| ||||    ||||||||||||| ||||||||  ||||| || ||| |||| |||||||||||||| |||| |||||| || || ||    
T  32767490 tgtttggatacattcatgtgtaaaagtgagttgaacaataaatttaagtgtaaaagtcagttctcgaatcaaaagctatgaatcttagcttcaagcataa 32767391  T
Q  267 tcaa 270  Q
    ||||    
T  32767390 tcaa 32767387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 117 - 215
Target Start/End: Original strand, 18356020 - 18356119
Alignment:
Q  117 ttgattctgtaaatttgattccaactaaaaatgagttgagggcaaagttgtttgtgtttggatacatttatgtaa--gtgagttgaactataaatttgtg 214  Q
    |||||| |||||||| ||||| |||||||| |||||||| || || |  |||| |||| |||||||||||| |||  |||||||||| ||||||||||||    
T  18356020 ttgattatgtaaatt-gattctaactaaaagtgagttgaaggtaagggggtttatgttcggatacatttatctaaacgtgagttgaattataaatttgtg 18356118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 167 - 213
Target Start/End: Complemental strand, 32101178 - 32101130
Alignment:
Q  167 tttgtgtttggatacatttatgtaa--gtgagttgaactataaatttgt 213  Q
    ||||||| |||||||||||||||||  ||||||||||||||||||||||    
T  32101178 tttgtgtgtggatacatttatgtaaaagtgagttgaactataaatttgt 32101130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 167 - 257
Target Start/End: Original strand, 38335841 - 38335933
Alignment:
Q  167 tttgtgtttggatacatttatgtaa--gtgagttgaactataaatttgtgtgtacaattcaattctagaatcaaaagctataaatcctagctt 257  Q
    |||||||| ||||||||| ||||||  |||||||  | |||||||||||| ||| || ||||||||| |||||||||| | ||||| ||||||    
T  38335841 tttgtgttcggatacattcatgtaaaagtgagttagaatataaatttgtgcgtaaaaatcaattctaaaatcaaaagcaacaaatcttagctt 38335933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 194 - 272
Target Start/End: Original strand, 44141059 - 44141137
Alignment:
Q  194 gagttgaactataaatttgtgtgtacaattcaattctagaatcaaaagctataaatcctagctttaatcagaatcaatt 272  Q
    ||||||||||||||| || |||||  || |||| ||||||||||||| ||| |||||||| ||| ||  ||||||||||    
T  44141059 gagttgaactataaaattatgtgtgaaaatcaactctagaatcaaaaactacaaatcctaacttcaagtagaatcaatt 44141137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 195 - 231
Target Start/End: Complemental strand, 33114829 - 33114793
Alignment:
Q  195 agttgaactataaatttgtgtgtacaattcaattcta 231  Q
    ||||||||||||||||||||||||| | |||||||||    
T  33114829 agttgaactataaatttgtgtgtacgaatcaattcta 33114793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 67; Significance: 1e-29; HSPs: 22)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 118 - 253
Target Start/End: Complemental strand, 7524267 - 7524130
Alignment:
Q  118 tgattctgtaaatttgattccaactaaaaatgagttgagggcaaagttgtttgtgtttggatacatttatgtaa--gtgagttgaactataaatttgtgt 215  Q
    ||||||| |||| ||||||| |||||||| |||| | | || |||||  |||||||||||| ||||||||||||  ||||||||||||||||||||||||    
T  7524267 tgattctataaaattgattctaactaaaagtgagctcaaggtaaagtgatttgtgtttggacacatttatgtaaaagtgagttgaactataaatttgtgt 7524168  T
Q  216 gtacaattcaattctagaatcaaaagctataaatccta 253  Q
    ||| || ||||||||| |||||||||||| ||||||||    
T  7524167 gtaaaaatcaattctataatcaaaagctacaaatccta 7524130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 190 - 274
Target Start/End: Complemental strand, 11049330 - 11049246
Alignment:
Q  190 aagtgagttgaactataaatttgtgtgtacaattcaattctagaatcaaaagctataaatcctagctttaatcagaatcaattct 274  Q
    |||||| |||||||||||||||||||||| || |||||| ||||||||||||||| |||||||||||| ||  |||||| |||||    
T  11049330 aagtgacttgaactataaatttgtgtgtaaaaatcaattttagaatcaaaagctacaaatcctagcttcaagtagaatcgattct 11049246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 167 - 257
Target Start/End: Complemental strand, 30557607 - 30557517
Alignment:
Q  167 tttgtgtttggatacatttatgtaa--gtgagttgaactataaatttgtgtgtacaattcaattctagaatcaaaagctataaatcctagctt 257  Q
    |||||||||||||||||| || |||  ||||||||||||||||||||||||| | |  |||||||||||||||||| ||| ||||||||||||    
T  30557607 tttgtgtttggatacattcatataaaagtgagttgaactataaatttgtgtgaaaa--tcaattctagaatcaaaaactacaaatcctagctt 30557517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 167 - 257
Target Start/End: Complemental strand, 1514448 - 1514356
Alignment:
Q  167 tttgtgtttggatacatttatgtaag--tgagttgaactataaatttgtgtgtacaattcaattctagaatcaaaagctataaatcctagctt 257  Q
    |||||||||||||||||| ||||||   |||||||||| ||||||||||||||| || |||||| || ||| |||||||| ||||||||||||    
T  1514448 tttgtgtttggatacattcatgtaaaaatgagttgaacaataaatttgtgtgtaaaaatcaattatataataaaaagctacaaatcctagctt 1514356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 167 - 272
Target Start/End: Original strand, 28083868 - 28083975
Alignment:
Q  167 tttgtgtttggatacatttatgtaa--gtgagttgaactataaatttgtgtgtacaattcaattctagaatcaaaagctataaatcctagctttaatcag 264  Q
    |||||||||||||| ||| ||||||  ||||| ||||||  ||||||||||||| || | |||| ||||||||||||||| |||| ||||||| ||  ||    
T  28083868 tttgtgtttggatatattcatgtaaaagtgagctgaacttgaaatttgtgtgtaaaaattaattatagaatcaaaagctacaaattctagcttcaagtag 28083967  T
Q  265 aatcaatt 272  Q
    ||||||||    
T  28083968 aatcaatt 28083975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 171 - 249
Target Start/End: Complemental strand, 3016263 - 3016183
Alignment:
Q  171 tgtttggatacatttatgtaa--gtgagttgaactataaatttgtgtgtacaattcaattctagaatcaaaagctataaat 249  Q
    |||||||||||||| ||||||  |||||||||||  ||||||| |||||| |  |||||||||||||||||||||| ||||    
T  3016263 tgtttggatacattcatgtaaaagtgagttgaaccgtaaatttatgtgtaaacatcaattctagaatcaaaagctacaaat 3016183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 167 - 274
Target Start/End: Complemental strand, 6021905 - 6021800
Alignment:
Q  167 tttgtgtttggatacatttatgtaagtgagttgaactataaatttgtgtgtacaattcaattctagaatcaaaagctataaatcctagctttaatcagaa 266  Q
    ||||||||||||||||| ||   ||||||||||||| ||||| ||| ||||| || || ||| ||||||||||||||| | |||||||||| ||  ||||    
T  6021905 tttgtgtttggatacatgtaa--aagtgagttgaaccataaacttgagtgtaaaaatctattatagaatcaaaagctacatatcctagcttcaagtagaa 6021808  T
Q  267 tcaattct 274  Q
    || |||||    
T  6021807 tcgattct 6021800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 190 - 274
Target Start/End: Original strand, 7790647 - 7790731
Alignment:
Q  190 aagtgagttgaactataaatttgtgtgtacaattcaattctagaatcaaaagctataaatcctagctttaatcagaatcaattct 274  Q
    ||||||||||||| ||||||||||||||| || |||||| ||||||| ||| ||| ||||| || ||| ||  ||||||||||||    
T  7790647 aagtgagttgaacaataaatttgtgtgtaaaaatcaattatagaatctaaatctacaaatcataacttcaagtagaatcaattct 7790731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 190 - 274
Target Start/End: Original strand, 28287341 - 28287425
Alignment:
Q  190 aagtgagttgaactataaatttgtgtgtacaattcaattctagaatcaaaagctataaatcctagctttaatcagaatcaattct 274  Q
    |||| |||||||| ||||||||| ||||  || ||||||||| |||||||||||| ||||||| |||| ||  |||| |||||||    
T  28287341 aagttagttgaacaataaatttgagtgttaaaatcaattctaaaatcaaaagctacaaatccttgcttcaagtagaaccaattct 28287425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 190 - 254
Target Start/End: Original strand, 30850404 - 30850468
Alignment:
Q  190 aagtgagttgaactataaatttgtgtgtacaattcaattctagaatcaaaagctataaatcctag 254  Q
    |||||||||||||||||||||||| |||  || ||||||||| ||| |||| ||| |||||||||    
T  30850404 aagtgagttgaactataaatttgtatgttaaaatcaattctaaaattaaaaactacaaatcctag 30850468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 50 - 94
Target Start/End: Complemental strand, 32088715 - 32088671
Alignment:
Q  50 aaaatttattttgataggtttggttgctctcaagtagaattgatt 94  Q
    |||||| ||||||| | ||||||||||||||||||||||||||||    
T  32088715 aaaattgattttgacatgtttggttgctctcaagtagaattgatt 32088671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 167 - 207
Target Start/End: Complemental strand, 52059431 - 52059391
Alignment:
Q  167 tttgtgtttggatacatttatgtaagtgagttgaactataa 207  Q
    |||||||||| |||||||||||||||||||||||| |||||    
T  52059431 tttgtgtttgaatacatttatgtaagtgagttgaattataa 52059391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 193 - 260
Target Start/End: Complemental strand, 3416157 - 3416090
Alignment:
Q  193 tgagttgaactataaatttgtgtgtacaattcaattctagaatcaaaagctataaatcctagctttaa 260  Q
    |||||| ||||||||||||||||||| || ||||||||| ||| |||| ||| ||||| || ||||||    
T  3416157 tgagttaaactataaatttgtgtgtaaaaatcaattctaaaataaaaaactacaaatcttaactttaa 3416090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 169 - 244
Target Start/End: Original strand, 10324920 - 10324997
Alignment:
Q  169 tgtgtttggatacatttatgtaa--gtgagttgaactataaatttgtgtgtacaattcaattctagaatcaaaagcta 244  Q
    ||||| |||||||||| ||||||  ||||||  ||| ||||||||| ||||| || |||||| |||||||||||||||    
T  10324920 tgtgtatggatacattaatgtaaaagtgagtataacaataaatttgagtgtaaaaatcaattatagaatcaaaagcta 10324997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 195 - 260
Target Start/End: Original strand, 40662991 - 40663054
Alignment:
Q  195 agttgaactataaatttgtgtgtacaattcaattctagaatcaaaagctataaatcctagctttaa 260  Q
    ||||||| |||||||||||||||  |  |||||||| ||||||||||||| |||| ||||||||||    
T  40662991 agttgaattataaatttgtgtgttaa--tcaattcttgaatcaaaagctacaaatactagctttaa 40663054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 172 - 242
Target Start/End: Original strand, 213522 - 213594
Alignment:
Q  172 gtttggatacatttatgtaa--gtgagttgaactataaatttgtgtgtacaattcaattctagaatcaaaagc 242  Q
    |||||||| |||| ||||||  ||||||||||| | ||||||| || || || ||||||||||||||||||||    
T  213522 gtttggatgcattcatgtaaaagtgagttgaacaacaaatttgagtttaaaaatcaattctagaatcaaaagc 213594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 167 - 275
Target Start/End: Original strand, 2099667 - 2099778
Alignment:
Q  167 tttgtgtttggatacatttatgtaag---tgagttgaactataaatttgtgtgtacaattcaattctagaatcaaaagctataaatcctagctttaatca 263  Q
    |||||||||||||||||| || |||    |||||||| |||||||||| |||||  || ||||||||| || ||||| ||| |||||  ||||| ||| |    
T  2099667 tttgtgtttggatacattcatataaaaaatgagttgagctataaatttatgtgtgaaaatcaattctataaccaaaatctacaaatctcagcttcaatta 2099766  T
Q  264 gaatcaattctg 275  Q
     |||||||||||    
T  2099767 caatcaattctg 2099778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 171 - 272
Target Start/End: Original strand, 48548998 - 48549099
Alignment:
Q  171 tgtttggatacatttatgtaa--gtgagttgaactataaatttgtgtgtacaattcaattctagaatcaaaagctataaatcctagctttaatcagaatc 268  Q
    ||||| |||||||||||||||  ||||||||||| ||||||  | || || || ||||||||||||||| |||||| || | ||||||| ||  ||||||    
T  48548998 tgttttgatacatttatgtaaaagtgagttgaacaataaat--gagtttaaaaatcaattctagaatcagaagctacaatttctagcttcaagtagaatc 48549095  T
Q  269 aatt 272  Q
    ||||    
T  48549096 aatt 48549099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 213 - 254
Target Start/End: Original strand, 51500862 - 51500903
Alignment:
Q  213 tgtgtacaattcaattctagaatcaaaagctataaatcctag 254  Q
    |||||| || |||||||||||||||||||||| |||||||||    
T  51500862 tgtgtaaaaatcaattctagaatcaaaagctacaaatcctag 51500903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 426 - 470
Target Start/End: Original strand, 2099659 - 2099703
Alignment:
Q  426 aaaagtggtttgtgttttgatacattcacataagaaatgagttga 470  Q
    ||||||| ||||||||| |||||||||| |||| |||||||||||    
T  2099659 aaaagtgatttgtgtttggatacattcatataaaaaatgagttga 2099703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 171 - 244
Target Start/End: Complemental strand, 34915167 - 34915092
Alignment:
Q  171 tgtttggatacatttatgtaa--gtgagttgaactataaatttgtgtgtacaattcaattctagaatcaaaagcta 244  Q
    |||||| ||||||| ||||||  |||||||||| |||||| | ||||||   | ||||||||||||||||||||||    
T  34915167 tgtttgaatacattcatgtaaaagtgagttgaattataaaatggtgtgttagaatcaattctagaatcaaaagcta 34915092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 190 - 230
Target Start/End: Original strand, 38797634 - 38797674
Alignment:
Q  190 aagtgagttgaactataaatttgtgtgtacaattcaattct 230  Q
    ||||||||||||||||||||||||||||  || ||||||||    
T  38797634 aagtgagttgaactataaatttgtgtgtgaaaatcaattct 38797674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 58; Significance: 3e-24; HSPs: 21)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 169 - 275
Target Start/End: Original strand, 32818352 - 32818460
Alignment:
Q  169 tgtgtttggatacatttatgtaa--gtgagttgaactataaatttgtgtgtacaattcaattctagaatcaaaagctataaatcctagctttaatcagaa 266  Q
    |||||||||||||||| ||||||  || |||||||||||||||||||||| | || |||||||||||||||||||||| |||| ||||||| ||  ||||    
T  32818352 tgtgtttggatacattcatgtaaaagttagttgaactataaatttgtgtgcaaaaatcaattctagaatcaaaagctacaaattctagcttcaaatagaa 32818451  T
Q  267 tcaattctg 275  Q
    |||||||||    
T  32818452 tcaattctg 32818460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 167 - 241
Target Start/End: Complemental strand, 35065168 - 35065092
Alignment:
Q  167 tttgtgtttggatacatttatgtaa--gtgagttgaactataaatttgtgtgtacaattcaattctagaatcaaaag 241  Q
    |||||||||||||||||| ||||||  |||||| ||  |||||||||||||||| || |||||||||||||||||||    
T  35065168 tttgtgtttggatacattcatgtaaaagtgagtggagatataaatttgtgtgtaaaaatcaattctagaatcaaaag 35065092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 171 - 272
Target Start/End: Original strand, 8604606 - 8604709
Alignment:
Q  171 tgtttggatacatttatgtaa--gtgagttgaactataaatttgtgtgtacaattcaattctagaatcaaaagctataaatcctagctttaatcagaatc 268  Q
    |||||||||||||| ||||||  |||  || ||||||||||||||||||  || |||||||||||||| ||||||| ||||| |||||| ||  ||||||    
T  8604606 tgtttggatacattcatgtaaaagtgcattcaactataaatttgtgtgtgaaaatcaattctagaatcgaaagctacaaatcttagcttcaagtagaatc 8604705  T
Q  269 aatt 272  Q
    ||||    
T  8604706 aatt 8604709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 167 - 274
Target Start/End: Original strand, 21691192 - 21691301
Alignment:
Q  167 tttgtgtttggatacatttatgtaa--gtgagttgaactataaatttgtgtgtacaattcaattctagaatcaaaagctataaatcctagctttaatcag 264  Q
    |||||||||||||| ||| ||||||  ||| ||||||||||||||||||||||  || ||||||||| || ||||||||| ||||| ||| || ||   |    
T  21691192 tttgtgtttggatatattcatgtaaaagtgtgttgaactataaatttgtgtgtgaaaatcaattctacaaccaaaagctacaaatcttagtttcaagttg 21691291  T
Q  265 aatcaattct 274  Q
    ||||||||||    
T  21691292 aatcaattct 21691301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 160 - 276
Target Start/End: Original strand, 31012711 - 31012830
Alignment:
Q  160 aaagttgtttgtgtttggatacatttatgtaag--tgagttgaactataaatttgtgtgt-acaattcaattctagaatcaaaagctataaatcctagct 256  Q
    ||||||||||||||||| |  |||||||||||   ||||||||||||||||| | ||||| | || ||||||||| ||| |||| ||| ||||||||| |    
T  31012711 aaagttgtttgtgtttgaacgcatttatgtaaaaatgagttgaactataaatatatgtgtgaaaaatcaattctaaaattaaaaactacaaatcctagtt 31012810  T
Q  257 ttaatcagaatcaattctga 276  Q
    || |  ||||||||||||||    
T  31012811 ttgagtagaatcaattctga 31012830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 174 - 257
Target Start/End: Complemental strand, 16552053 - 16551970
Alignment:
Q  174 ttggatacatttatgtaa--gtgagttgaactataaatttgtgtgtacaattcaattctagaatcaaaagctataaatcctagctt 257  Q
    ||||||||||| ||||||  |||||||||||||||||||||||||   || ||||||||||||  |||| ||| ||||||||||||    
T  16552053 ttggatacattcatgtaaaagtgagttgaactataaatttgtgtg--aaaatcaattctagaactaaaaactacaaatcctagctt 16551970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 131 - 182
Target Start/End: Original strand, 20712758 - 20712809
Alignment:
Q  131 ttgattccaactaaaaatgagttgagggcaaagttgtttgtgtttggataca 182  Q
    |||||||| |||||||||||||||| || |||||| ||||||||||||||||    
T  20712758 ttgattccgactaaaaatgagttgaaggtaaagttatttgtgtttggataca 20712809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 200 - 274
Target Start/End: Complemental strand, 30357582 - 30357508
Alignment:
Q  200 aactataaatttgtgtgtacaattcaattctagaatcaaaagctataaatcctagctttaatcagaatcaattct 274  Q
    ||||||||||||||||||| || |||||| || |||||||||||| |||||  ||||| ||  ||||||||||||    
T  30357582 aactataaatttgtgtgtaaaaatcaattatataatcaaaagctacaaatcacagcttcaagtagaatcaattct 30357508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 195 - 249
Target Start/End: Original strand, 42971912 - 42971966
Alignment:
Q  195 agttgaactataaatttgtgtgtacaattcaattctagaatcaaaagctataaat 249  Q
    ||||||||||||||||||| |||| || ||||||||| || ||||||||||||||    
T  42971912 agttgaactataaatttgtatgtaaaaatcaattctaaaagcaaaagctataaat 42971966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 160 - 251
Target Start/End: Complemental strand, 45011986 - 45011893
Alignment:
Q  160 aaagttgtttgtgtttggatacatttatgtaa--gtgagttgaactataaatttgtgtgtacaattcaattctagaatcaaaagctataaatcc 251  Q
    ||||| ||||| ||||| ||||||| || |||  ||||||  || |||||||||||||||  || |||||||||||||||||||||| ||||||    
T  45011986 aaagtggtttgggtttgaatacattcatataaaagtgagtaaaattataaatttgtgtgtgaaaatcaattctagaatcaaaagctacaaatcc 45011893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 160 - 274
Target Start/End: Complemental strand, 1616502 - 1616387
Alignment:
Q  160 aaagttgtttgtgtttggatacatttatgtaag--tgagttgaactataaatttgtgtgtacaattcaattctagaatcaaaagctataaatcctagctt 257  Q
    ||||| ||||||||||| ||||||| ||||||   ||||||||||| ||||  |||||||   | |||||||||||||||||||||| ||||  |||| |    
T  1616502 aaagtggtttgtgtttgaatacattcatgtaaaaatgagttgaactttaaacatgtgtgtgggaatcaattctagaatcaaaagctacaaattgtagc-t 1616404  T
Q  258 taatcagaatcaattct 274  Q
    |||  ||||||||||||    
T  1616403 taagtagaatcaattct 1616387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 190 - 243
Target Start/End: Complemental strand, 4243467 - 4243414
Alignment:
Q  190 aagtgagttgaactataaatttgtgtgtacaattcaattctagaatcaaaagct 243  Q
    |||||||| |||| ||||||||| ||||| || |||||||||||||||||||||    
T  4243467 aagtgagtagaacaataaatttgagtgtaaaaatcaattctagaatcaaaagct 4243414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 167 - 257
Target Start/End: Original strand, 53713541 - 53713633
Alignment:
Q  167 tttgtgtttggatacatttatgtaa--gtgagttgaactataaatttgtgtgtacaattcaattctagaatcaaaagctataaatcctagctt 257  Q
    |||||||||||| ||||| ||||||  ||||||||||||||| || | | |||  || |||||| ||||||||||||||| ||||| ||||||    
T  53713541 tttgtgtttggacacattcatgtaaaagtgagttgaactatatatatttatgtggaagtcaattatagaatcaaaagctacaaatcgtagctt 53713633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 193 - 257
Target Start/End: Original strand, 49138771 - 49138835
Alignment:
Q  193 tgagttgaactataaatttgtgtgtacaattcaattctagaatcaaaagctataaatcctagctt 257  Q
    |||||||||||||||  |||||| || || |||||| |||||||||||| || ||||||||||||    
T  49138771 tgagttgaactataagcttgtgtataaaaatcaattttagaatcaaaagttacaaatcctagctt 49138835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 43 - 94
Target Start/End: Original strand, 29728938 - 29728989
Alignment:
Q  43 aggagccaaaatttattttgataggtttggttgctctcaagtagaattgatt 94  Q
    |||| |||||||| ||||||| | |||||||||||||| |||||||||||||    
T  29728938 aggatccaaaattgattttgacaagtttggttgctctcgagtagaattgatt 29728989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 190 - 249
Target Start/End: Original strand, 52965859 - 52965918
Alignment:
Q  190 aagtgagttgaactataaatttgtgtgtacaattcaattctagaatcaaaagctataaat 249  Q
    |||||||||||| ||||||||| |||||   | |||||| ||||||||||||||||||||    
T  52965859 aagtgagttgaattataaatttatgtgttagaatcaattttagaatcaaaagctataaat 52965918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 190 - 272
Target Start/End: Complemental strand, 39386713 - 39386631
Alignment:
Q  190 aagtgagttgaactataaatttgtgtgtacaattcaattctagaatcaaaagctataaatcctagctttaatcagaatcaatt 272  Q
    |||||||||||||| ||||| |||||||  || |||||| |||||| ||| | |||||||  |||||||||  ||||||||||    
T  39386713 aagtgagttgaactttaaatatgtgtgtgaaaatcaattatagaattaaatgttataaattttagctttaagtagaatcaatt 39386631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 173 - 243
Target Start/End: Complemental strand, 10185293 - 10185221
Alignment:
Q  173 tttggatacatttatgtaa--gtgagttgaactataaatttgtgtgtacaattcaattctagaatcaaaagct 243  Q
    |||||||||||| ||||||  ||||||| ||| ||||||||| ||||| |  |||||| ||||||||||||||    
T  10185293 tttggatacattaatgtaaaagtgagttaaacaataaatttgagtgtaaagatcaattttagaatcaaaagct 10185221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 179 - 272
Target Start/End: Complemental strand, 9064324 - 9064229
Alignment:
Q  179 tacatttatgtaa--gtgagttgaactataaatttgtgtgtacaattcaattctagaatcaaaagctataaatcctagctttaatcagaatcaatt 272  Q
    |||||||||||||  |||||||||||  |||| ||| ||||  || |||||||||||||||||| ||| |||| |||| || ||  ||||||||||    
T  9064324 tacatttatgtaaaagtgagttgaaccgtaaacttgagtgtgaaaatcaattctagaatcaaaaactacaaattctagtttcaagtagaatcaatt 9064229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 193 - 253
Target Start/End: Original strand, 27967431 - 27967491
Alignment:
Q  193 tgagttgaactataaatttgtgtgtacaattcaattctagaatcaaaagctataaatccta 253  Q
    |||||||||||||||||||||| ||| || |||||| | |||| ||||  |||||||||||    
T  27967431 tgagttgaactataaatttgtgcgtaaaagtcaattattgaataaaaaattataaatccta 27967491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 168 - 241
Target Start/End: Complemental strand, 45694718 - 45694643
Alignment:
Q  168 ttgtgtttggatacatttatgtaag--tgagttgaactataaatttgtgtgtacaattcaattctagaatcaaaag 241  Q
    ||||||||||||||||| ||||||   |||||| |||||||||| |||||||   | ||||||||||||| |||||    
T  45694718 ttgtgtttggatacattcatgtaaaaatgagttcaactataaatgtgtgtgttagaatcaattctagaattaaaag 45694643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 55; Significance: 2e-22; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 117 - 244
Target Start/End: Complemental strand, 40491733 - 40491604
Alignment:
Q  117 ttgattctgtaaatttgattccaactaaaaatgagttgagggcaaagttgtttgtgtttggatacatttatgtaa--gtgagttgaactataaatttgtg 214  Q
    ||||||||||||| ||||||   ||||||| |||||||| || |||||  ||| | |||||||||||| ||||||  ||||||| |||| ||||||||||    
T  40491733 ttgattctgtaaaattgattttgactaaaagtgagttgaaggtaaagtgatttatttttggatacattcatgtaaaagtgagttaaactttaaatttgtg 40491634  T
Q  215 tgtacaattcaattctagaatcaaaagcta 244  Q
    |||| || ||||||||||||||||||||||    
T  40491633 tgtaaaagtcaattctagaatcaaaagcta 40491604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 190 - 276
Target Start/End: Original strand, 41386820 - 41386906
Alignment:
Q  190 aagtgagttgaactataaatttgtgtgtacaattcaattctagaatcaaaagctataaatcctagctttaatcagaatcaattctga 276  Q
    |||||||||||| |||||||||||||||| |  ||||||||||||| |||||||| |||||||||||| ||  ||||||||||||||    
T  41386820 aagtgagttgaattataaatttgtgtgtaaatatcaattctagaattaaaagctacaaatcctagcttcaagtagaatcaattctga 41386906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 131 - 274
Target Start/End: Complemental strand, 45557506 - 45557361
Alignment:
Q  131 ttgattccaactaaaaatgagttgagggcaaagttgtttgtgtttggatacatttatgtaa--gtgagttgaactataaatttgtgtgtacaattcaatt 228  Q
    |||||||  ||||||| |||||||| || |||||  |||||||||||||||||| ||||||  ||||||||| ||| ||||||||||||| || |||||     
T  45557506 ttgattctgactaaaagtgagttgaaggtaaagtgatttgtgtttggatacattcatgtaaaagtgagttgagctacaaatttgtgtgtaaaaatcaatc 45557407  T
Q  229 ctagaatcaaaagctataaatcctagctttaatcagaatcaattct 274  Q
    ||||||| |||||||| | || |||||||  | || ||||||||||    
T  45557406 ctagaattaaaagctacagattctagcttctagcaaaatcaattct 45557361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 140 - 274
Target Start/End: Original strand, 38123619 - 38123755
Alignment:
Q  140 actaaaaatgagttgagggcaaagttgtttgtgtttggatacatttatgtaa--gtgagttgaactataaatttgtgtgtacaattcaattctagaatca 237  Q
    ||||||| |||||||| || |||||  |||||||| ||| ||||| ||||||  ||||||||| | ||||||||| ||||| || ||||||||||||| |    
T  38123619 actaaaattgagttgaaggtaaagtaatttgtgttcggacacattcatgtaaaagtgagttgaccaataaatttgagtgtaaaaatcaattctagaatta 38123718  T
Q  238 aaagctataaatcctagctttaatcagaatcaattct 274  Q
     |||||| || | ||||||| ||  ||||||||||||    
T  38123719 gaagctacaatttctagcttcaagtagaatcaattct 38123755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 169 - 250
Target Start/End: Original strand, 42816450 - 42816533
Alignment:
Q  169 tgtgtttggatacatttatgta--agtgagttgaactataaatttgtgtgtacaattcaattctagaatcaaaagctataaatc 250  Q
    |||||||| ||||||| |||||  ||||| ||||| |||||||||||||||  || ||||||||||||| ||||| ||||||||    
T  42816450 tgtgtttgcatacattcatgtagaagtgaattgaattataaatttgtgtgtgaaaatcaattctagaattaaaagttataaatc 42816533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 194 - 250
Target Start/End: Complemental strand, 45997764 - 45997707
Alignment:
Q  194 gagttgaactataaatttgtgt-gtacaattcaattctagaatcaaaagctataaatc 250  Q
    |||||||||||||||||||||| ||| || | |||| |||||||||||||||||||||    
T  45997764 gagttgaactataaatttgtgttgtaaaaataaattatagaatcaaaagctataaatc 45997707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 174 - 243
Target Start/End: Complemental strand, 27571960 - 27571889
Alignment:
Q  174 ttggatacatttatgtaa--gtgagttgaactataaatttgtgtgtacaattcaattctagaatcaaaagct 243  Q
    ||||||||||||||||||  ||||||||||  ||||| ||| ||||  || |||||||||||||||||||||    
T  27571960 ttggatacatttatgtaaatgtgagttgaataataaacttgagtgttaaaatcaattctagaatcaaaagct 27571889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 144 - 272
Target Start/End: Complemental strand, 29842214 - 29842087
Alignment:
Q  144 aaaatgagttgagggcaaagttgtttgtgtttggatacatttatgtaagtgagttgaactataaatttgtgtgtacaattcaattctagaatcaaaagct 243  Q
    |||||| ||||| || |||||  |||||||||||||| |||  |||||||||||||||||||| |  | |||||  || ||||||||||||| ||||||     
T  29842214 aaaatgggttgaaggtaaagtgatttgtgtttggatagattcgtgtaagtgagttgaactatataagtctgtgtgtaa-tcaattctagaattaaaagcc 29842116  T
Q  244 ataaatcctagctttaatcagaatcaatt 272  Q
    |  ||||||  ||||||  ||||||||||    
T  29842115 acgaatcctctctttaagtagaatcaatt 29842087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 52 - 94
Target Start/End: Original strand, 12306679 - 12306721
Alignment:
Q  52 aatttattttgataggtttggttgctctcaagtagaattgatt 94  Q
    |||| ||||||| | ||||||||||||||||||||||||||||    
T  12306679 aattgattttgacatgtttggttgctctcaagtagaattgatt 12306721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 196 - 273
Target Start/End: Complemental strand, 31625495 - 31625420
Alignment:
Q  196 gttgaactataaatttgtgtgtacaattcaattctagaatcaaaagctataaatcctagctttaatcagaatcaattc 273  Q
    ||||||||||||||||| ||| | |  |||||| || || |||| |||| |||||||||||||||| |||||||||||    
T  31625495 gttgaactataaatttgcgtgaaaa--tcaattttataaccaaaggctacaaatcctagctttaatgagaatcaattc 31625420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 167 - 217
Target Start/End: Complemental strand, 32295289 - 32295237
Alignment:
Q  167 tttgtgtttggatacatttatgtaa--gtgagttgaactataaatttgtgtgt 217  Q
    |||||||||  ||||||||||||||  |||||||||| |||||||||||||||    
T  32295289 tttgtgttttaatacatttatgtaaaagtgagttgaattataaatttgtgtgt 32295237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 52; Significance: 1e-20; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 117 - 249
Target Start/End: Original strand, 31708169 - 31708303
Alignment:
Q  117 ttgattctgtaaatttgattccaactaaaaatgagttgagggcaaagttgtttgtgtttggatacatttatgtaa--gtgagttgaactataaatttgtg 214  Q
    |||||| |||||| ||||||   ||||||| |||||||  |  ||||| ||||||||||||||||||| ||||||  |||||||||| ||||||||||||    
T  31708169 ttgattttgtaaaattgattaggactaaaagtgagttgctgataaagtggtttgtgtttggatacattcatgtaaaagtgagttgaattataaatttgtg 31708268  T
Q  215 tgtacaattcaattctagaatcaaaagctataaat 249  Q
    |||   | |||||||||||||||||||||| ||||    
T  31708269 tgttagaatcaattctagaatcaaaagctacaaat 31708303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 189 - 253
Target Start/End: Original strand, 32523344 - 32523408
Alignment:
Q  189 taagtgagttgaactataaatttgtgtgtacaattcaattctagaatcaaaagctataaatccta 253  Q
    |||||||||| |||| |||||||||||||| || |||||| ||||||||||||||| ||||||||    
T  32523344 taagtgagttaaactctaaatttgtgtgtaaaaatcaattttagaatcaaaagctacaaatccta 32523408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 171 - 276
Target Start/End: Original strand, 40147834 - 40147941
Alignment:
Q  171 tgtttggatacatttatgtaa--gtgagttgaactataaatttgtgtgtacaattcaattctagaatcaaaagctataaatcctagctttaatcagaatc 268  Q
    |||||||||||||| ||||||  ||||||||||  |||||||   ||||  || |||||||||||||||||||||  |||| ||||||| ||  ||||||    
T  40147834 tgtttggatacattaatgtaaaagtgagttgaatgataaattcaagtgttgaaatcaattctagaatcaaaagctccaaattctagcttgaagtagaatc 40147933  T
Q  269 aattctga 276  Q
    ||||||||    
T  40147934 aattctga 40147941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 190 - 274
Target Start/End: Complemental strand, 52364131 - 52364047
Alignment:
Q  190 aagtgagttgaactataaatttgtgtgtacaattcaattctagaatcaaaagctataaatcctagctttaatcagaatcaattct 274  Q
    |||||||||||||| ||||||| ||| |  || |||||| ||||||||||||||||||||| |||||| ||  |||| |||||||    
T  52364131 aagtgagttgaactgtaaatttatgtttgaaaatcaattatagaatcaaaagctataaatcatagcttcaagtagaaacaattct 52364047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 117 - 249
Target Start/End: Complemental strand, 31013173 - 31013039
Alignment:
Q  117 ttgattctgtaaatttgattccaactaaaaatgagttgagggcaaagttgtttgtgtttggatacatttatgta--agtgagttgaactataaatttgtg 214  Q
    |||||||  |||| |||||||| ||||||| |||||||  |  |||||  ||||||||||||| |||| |||||  ||||||||||| | ||||||||||    
T  31013173 ttgattccataaaattgattccgactaaaagtgagttgtagataaagtgatttgtgtttggatgcattcatgtacaagtgagttgaattctaaatttgtg 31013074  T
Q  215 tgtacaattcaattctagaatcaaaagctataaat 249  Q
    |||   | ||||||||||| ||||| |||| ||||    
T  31013073 tgttagaatcaattctagattcaaaggctacaaat 31013039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 176 - 243
Target Start/End: Original strand, 46853523 - 46853592
Alignment:
Q  176 ggatacatttatgtaa--gtgagttgaactataaatttgtgtgtacaattcaattctagaatcaaaagct 243  Q
    ||||| ||||||||||  ||||||||||| ||||||||| ||||  || |||||||||||||||||||||    
T  46853523 ggatatatttatgtaaaagtgagttgaacaataaatttgagtgttaaaatcaattctagaatcaaaagct 46853592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 180 - 241
Target Start/End: Complemental strand, 4526224 - 4526161
Alignment:
Q  180 acatttatgtaa--gtgagttgaactataaatttgtgtgtacaattcaattctagaatcaaaag 241  Q
    ||||||||||||  ||| ||||||||||||||||||||||| || |||||| || |||||||||    
T  4526224 acatttatgtaaaagtgtgttgaactataaatttgtgtgtaaaaatcaattttaaaatcaaaag 4526161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 190 - 250
Target Start/End: Complemental strand, 50550654 - 50550594
Alignment:
Q  190 aagtgagttgaactataaatttgtgtgtacaattcaattctagaatcaaaagctataaatc 250  Q
    ||||||||  ||||||||||||||||||  || |||||| |||||||||||| ||||||||    
T  50550654 aagtgagtcaaactataaatttgtgtgtgaaaatcaattttagaatcaaaagttataaatc 50550594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 160 - 257
Target Start/End: Original strand, 52141221 - 52141320
Alignment:
Q  160 aaagttgtttgtgtttggatacatttatgtaa--gtgagttgaactataaatttgtgtgtacaattcaattctagaatcaaaagctataaatcctagctt 257  Q
    ||||| ||||||||||  ||||||| || |||  |||||||||||||||| | |||||||  || | |||||||||||| || |||| ||||||||||||    
T  52141221 aaagtagtttgtgtttaaatacattcatataaaagtgagttgaactataattatgtgtgtgaaaattaattctagaatcgaatgctacaaatcctagctt 52141320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 117 - 244
Target Start/End: Original strand, 37334964 - 37335093
Alignment:
Q  117 ttgattctgtaaatttgattccaactaaaaatgagttgagggcaaagttgtttgtgtttggatacatttatgtaag--tgagttgaactataaatttgtg 214  Q
    |||||| | |||| |||||||| ||||||| |||||||| || |||||  ||| ||| || ||||||| || |||   |||||||||| || ||||   |    
T  37334964 ttgattatataaaattgattccgactaaaattgagttgaaggtaaagtgatttatgtctgaatacattcatataaaaatgagttgaacaatgaattcaag 37335063  T
Q  215 tgtacaattcaattctagaatcaaaagcta 244  Q
    |||| || ||||||||||||||||||||||    
T  37335064 tgtaaaaatcaattctagaatcaaaagcta 37335093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 117 - 243
Target Start/End: Original strand, 35264341 - 35264469
Alignment:
Q  117 ttgattctgtaaatttgattccaactaaaaatgagttgagggcaaagttgtttgtgtttggatacatttatgtaag--tgagttgaactataaatttgtg 214  Q
    ||||||||||||| ||||||  ||| |||| ||||||||  | |||||   || ||||||| |||||| ||||||   ||| |||||| ||||||||  |    
T  35264341 ttgattctgtaaaattgattgtaaccaaaagtgagttgaaagtaaagtgagttatgtttgggtacattcatgtaaaaatgacttgaacaataaatttaag 35264440  T
Q  215 tgtacaattcaattctagaatcaaaagct 243  Q
    |||  || |||||||||||||||||||||    
T  35264441 tgttaaaatcaattctagaatcaaaagct 35264469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 192 - 273
Target Start/End: Complemental strand, 44771772 - 44771691
Alignment:
Q  192 gtgagttgaactataaatttgtgtgtacaattcaattctagaatcaaaagctataaatcctagctttaatcagaatcaattc 273  Q
    ||||||||||||  |||||  |||||| || |||||| ||||||||||||||| |||| |||| ||||   |||||||||||    
T  44771772 gtgagttgaacttcaaattaatgtgtaaaaatcaattttagaatcaaaagctacaaattctagatttaggtagaatcaattc 44771691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 50 - 94
Target Start/End: Complemental strand, 2410072 - 2410028
Alignment:
Q  50 aaaatttattttgataggtttggttgctctcaagtagaattgatt 94  Q
    |||||||||||||| | |||||| || ||||||||||||||||||    
T  2410072 aaaatttattttgacatgtttggatgttctcaagtagaattgatt 2410028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 197 - 249
Target Start/End: Complemental strand, 31492839 - 31492788
Alignment:
Q  197 ttgaactataaatttgtgtgtacaattcaattctagaatcaaaagctataaat 249  Q
    ||||| |||||||||||||||  ||| ||||||||||||||||||||| ||||    
T  31492839 ttgaattataaatttgtgtgttaaat-caattctagaatcaaaagctacaaat 31492788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 171 - 244
Target Start/End: Original strand, 41596133 - 41596208
Alignment:
Q  171 tgtttggatacatttatgtaa--gtgagttgaactataaatttgtgtgtacaattcaattctagaatcaaaagcta 244  Q
    |||||||||||||| ||| ||  ||||||  ||||||||| ||||||||| || ||||||||  ||||||||||||    
T  41596133 tgtttggatacattcatggaaaagtgagtcaaactataaacttgtgtgtaaaaatcaattctttaatcaaaagcta 41596208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 46; Significance: 5e-17; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 117 - 239
Target Start/End: Original strand, 11759789 - 11759913
Alignment:
Q  117 ttgattctgtaaatttgattccaactaaaaatgagttgagggcaaagttgtttgtgtttggatacatttatgtaag--tgagttgaactataaatttgtg 214  Q
    |||||| |||||| ||||||   | ||||| |||||||| || ||| | ||||||||||| ||||| |||||||||  ||| |||||||||||||||||     
T  11759789 ttgattttgtaaaattgattttgattaaaagtgagttgaaggtaaattggtttgtgtttgtatacacttatgtaagcgtgatttgaactataaatttgta 11759888  T
Q  215 tgtacaattcaattctagaatcaaa 239  Q
    |||| || |||||||||||||||||    
T  11759889 tgtaaaaatcaattctagaatcaaa 11759913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 141 - 275
Target Start/End: Complemental strand, 16518909 - 16518774
Alignment:
Q  141 ctaaaaatgagttgagggcaaagttgtttgtgtttggatacatttatgt--aagtgagttgaactataaatttgtgtgtacaattcaattctagaatcaa 238  Q
    |||||| ||||||||||| ||| |  |||||||||||||||||| ||||  ||||||||||||||||||||||||| ||| || || ||  || ||||||    
T  16518909 ctaaaagtgagttgagggtaaaatgatttgtgtttggatacattcatgtaaaagtgagttgaactataaatttgtgcgtaaaagtc-atcttataatcaa 16518811  T
Q  239 aagctataaatcctagctttaatcagaatcaattctg 275  Q
    |||||| |||||||| |||  |  |||||||||||||    
T  16518810 aagctacaaatcctatcttctagtagaatcaattctg 16518774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 167 - 274
Target Start/End: Original strand, 33019136 - 33019245
Alignment:
Q  167 tttgtgtttggatacatttatgtaa--gtgagttgaactataaatttgtgtgtacaattcaattctagaatcaaaagctataaatcctagctttaatcag 264  Q
    ||||||||||||| |||| ||||||  |||||||||||||||||||| |||||  || ||||||||| || ||||||||| |||| ||||||| ||  |     
T  33019136 tttgtgtttggatgcattcatgtaaaagtgagttgaactataaatttatgtgtgaaaatcaattctaaaaccaaaagctacaaattctagcttcaaatat 33019235  T
Q  265 aatcaattct 274  Q
    ||||||||||    
T  33019236 aatcaattct 33019245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 167 - 272
Target Start/End: Complemental strand, 42741081 - 42740975
Alignment:
Q  167 tttgtgtttggatacatttatgtaa--gtgagttgaactataaatttgtgtgtacaattcaattctagaatcaaaagctataaatcctagctttaatcag 264  Q
    |||||||||| ||||||| ||||||  |||||||| ||  |||||||| ||||| || |||||||||||||||||||||| ||||| |||||| ||  ||    
T  42741081 tttgtgtttgaatacatt-atgtaaaagtgagttggacagtaaatttgagtgtaaaaatcaattctagaatcaaaagctacaaatcttagcttcaagtag 42740983  T
Q  265 aatcaatt 272  Q
    ||||||||    
T  42740982 aatcaatt 42740975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 167 - 241
Target Start/End: Complemental strand, 33502339 - 33502266
Alignment:
Q  167 tttgtgtttggatacatttatgtaagtgagttgaactataaatttgtgtgtacaattcaattctagaatcaaaag 241  Q
    ||||||||||||||||||  |  |||||||||||||||||||| |||||||| || |||||| ||||||||||||    
T  33502339 tttgtgtttggatacattg-taaaagtgagttgaactataaatatgtgtgtaaaaatcaattttagaatcaaaag 33502266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 168 - 241
Target Start/End: Complemental strand, 32596095 - 32596020
Alignment:
Q  168 ttgtgtttggatacatttatgtaa--gtgagttgaactataaatttgtgtgtacaattcaattctagaatcaaaag 241  Q
    ||||||||||||| ||||||||||  |||||||||| ||| ||||||| |||| || |||||| ||||||||||||    
T  32596095 ttgtgtttggatatatttatgtaaaagtgagttgaattatgaatttgtatgtaaaaatcaattttagaatcaaaag 32596020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 173 - 270
Target Start/End: Complemental strand, 42982643 - 42982544
Alignment:
Q  173 tttggatacatttatgtaa--gtgagttgaactataaatttgtgtgtacaattcaattctagaatcaaaagctataaatcctagctttaatcagaatcaa 270  Q
    |||||||||||| ||||||  |||||||| |  ||||||||||||||| || |||||||| ||||||||||||| || | ||||||| ||  ||||||||    
T  42982643 tttggatacattcatgtaaaagtgagttgtaaaataaatttgtgtgtaaaaatcaattctggaatcaaaagctacaatttctagcttcaagtagaatcaa 42982544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 167 - 243
Target Start/End: Complemental strand, 22536103 - 22536025
Alignment:
Q  167 tttgtgtttggatacatttatgt--aagtgagttgaactataaatttgtgtgtacaattcaattctagaatcaaaagct 243  Q
    |||||||||||||||||||||||  || |||||| |||||||||| |||||| | || | ||||||| |||||||||||    
T  22536103 tttgtgtttggatacatttatgtaaaaatgagtttaactataaatatgtgtgcaaaaattaattctaaaatcaaaagct 22536025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 167 - 274
Target Start/End: Complemental strand, 43501228 - 43501121
Alignment:
Q  167 tttgtgtttggatacatttatgtaag--tgagttgaactataaatttgtgtgtacaattcaattctagaatcaaaagctataaatcctagctttaatcag 264  Q
    |||||||||| ||||||| ||||||   ||||||||| ||||| ||||||| || ||| |||||||| |||||||||||| ||||||||| || ||  ||    
T  43501228 tttgtgtttgtatacattcatgtaaaactgagttgaattataattttgtgt-tagaat-caattctaaaatcaaaagctacaaatcctagtttcaagtag 43501131  T
Q  265 aatcaattct 274  Q
    ||||||||||    
T  43501130 aatcaattct 43501121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 167 - 253
Target Start/End: Original strand, 33047562 - 33047650
Alignment:
Q  167 tttgtgtttggatacatttatgt--aagtgagttgaactataaatttgtgtgtacaattcaattctagaatcaaaagctataaatccta 253  Q
    |||||||||||||||||||||||  ||||||| |||||  ||||||| | |||  || ||| ||||| |||||||||||| ||||||||    
T  33047562 tttgtgtttggatacatttatgtaaaagtgaggtgaaccgtaaatttttctgtgaaaatcatttctaaaatcaaaagctacaaatccta 33047650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 171 - 243
Target Start/End: Complemental strand, 44439355 - 44439281
Alignment:
Q  171 tgtttggatacatttatgtaa--gtgagttgaactataaatttgtgtgtacaattcaattctagaatcaaaagct 243  Q
    ||||||||||  |||||||||  ||||||||||| ||||||||| ||||  || |||||| ||||||||||||||    
T  44439355 tgtttggatatgtttatgtaaaagtgagttgaacaataaatttgagtgttaaaatcaattttagaatcaaaagct 44439281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 167 - 258
Target Start/End: Original strand, 11504042 - 11504134
Alignment:
Q  167 tttgtgtttggatacatttatgtaa--gtgagttgaactataaatttgtgtgtacaattcaattctagaatcaaaagctataaatcctagcttt 258  Q
    |||||||||  ||||||| ||||||  |||||||||||||||| |||||||||  ||  |||||||| |||||||| ||| |||||||| ||||    
T  11504042 tttgtgttttaatacattcatgtaaaagtgagttgaactataactttgtgtgt-gaaaacaattctataatcaaaaactacaaatcctaacttt 11504134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 45 - 94
Target Start/End: Original strand, 1101941 - 1101990
Alignment:
Q  45 gagccaaaatttattttgataggtttggttgctctcaagtagaattgatt 94  Q
    ||||||||||||||||||| |  ||||||||| ||| |||||||||||||    
T  1101941 gagccaaaatttattttgaaatttttggttgcactcgagtagaattgatt 1101990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 167 - 249
Target Start/End: Original strand, 5533011 - 5533095
Alignment:
Q  167 tttgtgtttggatacatttatgtaa--gtgagttgaactataaatttgtgtgtacaattcaattctagaatcaaaagctataaat 249  Q
    ||||| ||||||||| || ||||||  |||||||||| ||||||||| |||||  || ||||||  |||||||||||||| ||||    
T  5533011 tttgtttttggatacgttcatgtaaatgtgagttgaattataaatttatgtgtttaaatcaatttaagaatcaaaagctacaaat 5533095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 167 - 257
Target Start/End: Complemental strand, 13912892 - 13912800
Alignment:
Q  167 tttgtgtttggatacatttatgtaag--tgagttgaactataaatttgtgtgtacaattcaattctagaatcaaaagctataaatcctagctt 257  Q
    |||||||||||||||| | ||||||   ||||||||||  |||||||||||||| || | ||||||||||| ||||  || |||| |||||||    
T  13912892 tttgtgtttggatacaatcatgtaaaaatgagttgaacggtaaatttgtgtgtaaaaattaattctagaataaaaaattacaaattctagctt 13912800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 190 - 239
Target Start/End: Original strand, 26032040 - 26032089
Alignment:
Q  190 aagtgagttgaactataaatttgtgtgtacaattcaattctagaatcaaa 239  Q
    |||||||||||| ||||||||| ||||||||| ||||||  |||||||||    
T  26032040 aagtgagttgaagtataaatttatgtgtacaagtcaatttaagaatcaaa 26032089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0361 (Bit Score: 44; Significance: 8e-16; HSPs: 1)
Name: scaffold0361
Description:

Target: scaffold0361; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 116 - 244
Target Start/End: Original strand, 14043 - 14173
Alignment:
Q  116 tttgattctgtaaatttgattccaactaaaaatgagttgagggcaaagttgtttgtgtttggatacatttatgt--aagtgagttgaactataaatttgt 213  Q
    ||||||| |||||| |||||||   ||| || |||||||| || |||||  ||| |||||||||||||| ||||  ||||||||||||  |||||||||     
T  14043 tttgattttgtaaaattgattcttgctacaattgagttgaaggtaaagtgatttatgtttggatacattcatgtgaaagtgagttgaaaaataaatttga 14142  T
Q  214 gtgtacaattcaattctagaatcaaaagcta 244  Q
    ||||| || ||||||||||||||| ||||||    
T  14143 gtgtaaaaatcaattctagaatcataagcta 14173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 8e-16; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 168 - 272
Target Start/End: Original strand, 6951286 - 6951392
Alignment:
Q  168 ttgtgtttggatacatttatgtaa--gtgagttgaactataaatttgtgtgtacaattcaattctagaatcaaaagctataaatcctagctttaatcaga 265  Q
    |||| |||||||| ||| ||||||  |||| ||||| ||||||||| ||||||||| |||||| ||||||||||||||| |||||||| ||| ||  |||    
T  6951286 ttgtatttggataaattcatgtaaaagtgaattgaattataaatttatgtgtacaaatcaattatagaatcaaaagctacaaatcctaacttcaagtaga 6951385  T
Q  266 atcaatt 272  Q
    |||||||    
T  6951386 atcaatt 6951392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 190 - 272
Target Start/End: Complemental strand, 9818815 - 9818732
Alignment:
Q  190 aagtgagttgaactataaatttgtgtgtacaat-tcaattctagaatcaaaagctataaatcctagctttaatcagaatcaatt 272  Q
    |||||||||||||||||||||||||| || ||  |||||||||||||||||||||| ||||| |||||| ||  ||||||||||    
T  9818815 aagtgagttgaactataaatttgtgtttaaaaaatcaattctagaatcaaaagctacaaatcatagcttcaagtagaatcaatt 9818732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 167 - 272
Target Start/End: Complemental strand, 38845549 - 38845441
Alignment:
Q  167 tttgtgtttggatacatttatgtaa---gtgagttgaactataaatttgtgtgtacaattcaattctagaatcaaaagctataaatcctagctttaatca 263  Q
    |||||||||||||| ||| ||||||   ||||||| ||||||| ||||||||||  || |||||||||||||||||| ||| ||||| |||||| ||  |    
T  38845549 tttgtgtttggatatattcatgtaaaaagtgagtttaactatatatttgtgtgtgaaaatcaattctagaatcaaaaactacaaatcttagcttcaagta 38845450  T
Q  264 gaatcaatt 272  Q
    |||||||||    
T  38845449 gaatcaatt 38845441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 166 - 272
Target Start/End: Original strand, 18851061 - 18851169
Alignment:
Q  166 gtttgtgtttggatacatttatgtaa--gtgagttgaactataaatttgtgtgtacaattcaattctagaatcaaaagctataaatcctagctttaatca 263  Q
    |||||||||||||||  || ||||||  ||||||| |||||||||| |||||||  || ||||||||| |||||||||||| ||||| |||||| ||  |    
T  18851061 gtttgtgtttggataacttcatgtaaaagtgagtttaactataaatatgtgtgtgaaaatcaattctataatcaaaagctacaaatcatagcttcaagta 18851160  T
Q  264 gaatcaatt 272  Q
    |||||||||    
T  18851161 gaatcaatt 18851169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 191 - 274
Target Start/End: Original strand, 22572410 - 22572493
Alignment:
Q  191 agtgagttgaactataaatttgtgtgtacaattcaattctagaatcaaaagctataaatcctagctttaatcagaatcaattct 274  Q
    |||||||| |||||||||||||| | || |||||||||||| |||||||||||| |||||| ||||| ||  | ||||||||||    
T  22572410 agtgagttaaactataaatttgtttataaaattcaattctataatcaaaagctacaaatcccagcttcaagaacaatcaattct 22572493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 190 - 274
Target Start/End: Complemental strand, 42858188 - 42858104
Alignment:
Q  190 aagtgagttgaactataaatttgtgtgtacaattcaattctagaatcaaaagctataaatcctagctttaatcagaatcaattct 274  Q
    ||||||||||||||||||||||||||||  || |||||| |||||| |||||||  |||||||| ||| ||  | ||||||||||    
T  42858188 aagtgagttgaactataaatttgtgtgtgaaaatcaattatagaattaaaagctccaaatcctaacttcaagtaaaatcaattct 42858104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 131 - 244
Target Start/End: Complemental strand, 18637424 - 18637310
Alignment:
Q  131 ttgattccaactaaaaatgagttgagggcaaagttgtttgtgtttggatacatttatgt---aagtgagttgaactataaatttgtgtgtacaattcaat 227  Q
    ||||||| |||||||| ||||||||| | | |||  |||||||||||||| |||  | |   || |||||||||||||||||  ||||||| || |||||    
T  18637424 ttgattctaactaaaagtgagttgagagtacagtgatttgtgtttggatagattctttttaaaattgagttgaactataaat--gtgtgtaaaaatcaat 18637327  T
Q  228 tctagaatcaaaagcta 244  Q
    |||||||||||||||||    
T  18637326 tctagaatcaaaagcta 18637310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 50 - 97
Target Start/End: Original strand, 38592173 - 38592220
Alignment:
Q  50 aaaatttattttgataggtttggttgctctcaagtagaattgattcta 97  Q
    |||||| || |||||| |||||||||||||||||||||||||||||||    
T  38592173 aaaattgatattgatatgtttggttgctctcaagtagaattgattcta 38592220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 195 - 249
Target Start/End: Original strand, 370743 - 370797
Alignment:
Q  195 agttgaactataaatttgtgtgtacaattcaattctagaatcaaaagctataaat 249  Q
    ||||||| ||||||||||||||||||| |||||| || |||||||||||| ||||    
T  370743 agttgaagtataaatttgtgtgtacaaatcaattttaaaatcaaaagctacaaat 370797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 117 - 272
Target Start/End: Complemental strand, 14299481 - 14299328
Alignment:
Q  117 ttgattctgtaaatttgattccaactaaaaatgagttgagggcaaagttgtttgtgtttggatacatttatgtaa-gtgagttgaactataaatttgtgt 215  Q
    |||||| |||||| ||||||| |  ||||| |||||||| || |||||  |||||||||| |||||   |||||| |||| | ||||||||||||| |||    
T  14299481 ttgattgtgtaaaattgattctagataaaagtgagttgaaggtaaagtgatttgtgtttgaataca---atgtaaagtgaatcgaactataaatttatgt 14299385  T
Q  216 gtacaattcaattctagaatcaaaagctataaatcctagctttaatcagaatcaatt 272  Q
    ||  ||  |||||||||||| |||| ||| |||||||| ||| ||  ||||||||||    
T  14299384 gtgaaaaccaattctagaataaaaaactacaaatcctaacttcaagtagaatcaatt 14299328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 190 - 251
Target Start/End: Original strand, 28110443 - 28110504
Alignment:
Q  190 aagtgagttgaactataaatttgtgtgtacaattcaattctagaatcaaaagctataaatcc 251  Q
    ||||||||| ||||||||||||||||||  || ||||||||| ||||||||| || ||||||    
T  28110443 aagtgagttcaactataaatttgtgtgtgaaaatcaattctaaaatcaaaagttacaaatcc 28110504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 190 - 271
Target Start/End: Original strand, 22226241 - 22226322
Alignment:
Q  190 aagtgagttgaactataaatttgtgtgtacaattcaattctagaatcaaaagctataaatcctagctttaatcagaatcaat 271  Q
    |||| ||| ||||| |||||||||||||| || | ||||||| |||||||||||| |||| ||| ||| ||  |||||||||    
T  22226241 aagttagtcgaactctaaatttgtgtgtaaaagttaattctaaaatcaaaagctacaaatactatcttcaagtagaatcaat 22226322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0168 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: scaffold0168
Description:

Target: scaffold0168; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 161 - 257
Target Start/End: Complemental strand, 31940 - 31839
Alignment:
Q  161 aagttgtttgtgtttggatacatttatgt--aagtgagttg---aactataaatttgtgtgtacaattcaattctagaatcaaaagctataaatcctagc 255  Q
    |||| ||||||||||||||||||||||||  ||||||||||   |||||||||| ||| |||  || ||||||| | |||||||||||| ||||||||||    
T  31940 aagtggtttgtgtttggatacatttatgtaaaagtgagttgtttaactataaatatgtatgtgaaaatcaattcaataatcaaaagctacaaatcctagc 31841  T
Q  256 tt 257  Q
    ||    
T  31840 tt 31839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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