View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7708A_high_9 (Length: 454)
Name: NF7708A_high_9
Description: NF7708A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7708A_high_9 |
 | |
|
| [»] scaffold1051 (1 HSPs) |
| | |
|
Alignment Details
Target: chr8 (Bit Score: 357; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 62 - 430
Target Start/End: Complemental strand, 41311395 - 41311027
Alignment:
| Q |
62 |
ataaaaatacatggtatctagttcaattgacttggagatgttctcattgagaggtaatcaatgggaacaaattgagtttgattctgatttgccttataag |
161 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41311395 |
ataaaaatacatggtatctagttcaattgacttggagattttctcattgagaggtaatcaatgggaacaaattgagtttgattctgatttgccttataag |
41311296 |
T |
|
| Q |
162 |
aatactgcaagctctaatggtggtcccagagttgggtcgttcttgaatggttctattcattggctgatttatgatgataagactgaaatggatgttatta |
261 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
41311295 |
aatactgcaagctctaatggtggtcccagagttgggtcgttcttgaatggttctattcattggctggtttatgatgataagactgaaatggatgttatta |
41311196 |
T |
|
| Q |
262 |
ttgcctttgatttaaaggaaatgacactgtcagagactgctctcccagatggtttttatagtgattactctactagaatttatgatttgatggtatttgg |
361 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41311195 |
ttgcctttgatttaaaggaaatgacactgtcagagactgctctcccagatggtttttatagtgattactctactagaatttatgatttgatggtatttgg |
41311096 |
T |
|
| Q |
362 |
cagacttattagtgtatggaatatggagatgcctacacttaagatatgggtgatgcaagaatacacaat |
430 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
41311095 |
cagacttattagtgtatggaatatggagatgcctacacttaagatatgggtgatgcaagaatacgcaat |
41311027 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 73 - 425
Target Start/End: Complemental strand, 43165062 - 43164710
Alignment:
| Q |
73 |
tggtatctagttcaattgacttggagatgttctcattgagaggtaatcaatgggaacaaattgagtttgattctgatttgccttataagaatactgcaag |
172 |
Q |
| |
|
||||||||||||| |||||||||||||| ||||||||||||| |||| |||||||||||||||||||||||||||||||||||||| |||||||| ||| |
|
|
| T |
43165062 |
tggtatctagttcgattgacttggagattttctcattgagagctaatgaatgggaacaaattgagtttgattctgatttgccttattggaatactgaaag |
43164963 |
T |
|
| Q |
173 |
ctctaatggtggtcccagagttgggtcgttcttgaatggttctattcattggctgatttatgatgataagactgaaatggatgttattattgcctttgat |
272 |
Q |
| |
|
|| | |||| ||||||||| ||||||||||||||||||||||||||||||||| ||||| || || |||||||||| |||||||||||||||| |||| |
|
|
| T |
43164962 |
acctgaaggtgctcccagagtcgggtcgttcttgaatggttctattcattggctggtttataattatgagactgaaatagatgttattattgcctatgat |
43164863 |
T |
|
| Q |
273 |
ttaaaggaaatgacactgtcagagactgctctcccagatggtttttatagtgattactctactagaatttatgatttgatggtatttggcagacttatta |
372 |
Q |
| |
|
|||||||||| |||| ||||||||| |||||| ||||||| |||||||||||||| ||| | | ||||||||||| ||||| || || ||||||| | |
|
|
| T |
43164862 |
ttaaaggaaaagacaatgtcagagattgctcttccagatgatttttatagtgatttttctcccaacctttatgatttgttggtacttcgcggacttatca |
43164763 |
T |
|
| Q |
373 |
gtgtatggaatatggagatgcctacacttaagatatgggtgatgcaagaatac |
425 |
Q |
| |
|
| |||||||||||||||||| ||||||||||||||||||| |||||||||||| |
|
|
| T |
43164762 |
gcgtatggaatatggagatgtctacacttaagatatgggtaatgcaagaatac |
43164710 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 111; Significance: 7e-56; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 138 - 425
Target Start/End: Original strand, 30165608 - 30165883
Alignment:
| Q |
138 |
tttgattctgatttgccttataagaatactgcaagctctaatggtggtcccagagttgggtcgttcttgaatggttctattcattggctgatttatgatg |
237 |
Q |
| |
|
||||||||| |||||||||||| ||| ||||| ||||| | |||||||||||||||||||||||||| ||||||||||||||||||||| ||||| || |
|
|
| T |
30165608 |
tttgattctcatttgccttataggaaccctgcatgctctgaaggtggtcccagagttgggtcgttcttcaatggttctattcattggctggtttataatt |
30165707 |
T |
|
| Q |
238 |
ataagactgaaatggatgttattattgcctttgatttaaaggaaatgacactgtcagagactgctctcccagatggtttttatagtgattactctactag |
337 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||| |||| || |||||| ||||| ||| ||| || || | ||| | |
|
|
| T |
30165708 |
atcagactgaaatggatgttattattgcctttgatttaaaggaagcgacaatggcagagatagctcttccaaatgattgttctcgtg------------g |
30165795 |
T |
|
| Q |
338 |
aatttatgatttgatggtatttggcagacttattagtgtatggaatatggagatgcctacacttaagatatgggtgatgcaagaatac |
425 |
Q |
| |
|
||||||||||||| |||||||| ||||||| |||||||||||| |||||| | ||||| |||||||||||||||||||||||||| |
|
|
| T |
30165796 |
aatttatgatttgttggtatttcatggacttatcagtgtatggaatgtggagaggtctacagttaagatatgggtgatgcaagaatac |
30165883 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 83 - 430
Target Start/End: Complemental strand, 30125328 - 30124981
Alignment:
| Q |
83 |
ttcaattgacttggagatgttctcattgagaggtaatcaatgggaacaaattgagtttgattctgatttgccttataagaatactgcaagctctaatggt |
182 |
Q |
| |
|
|||||||||||||||||| ||| ||||||||| |||| | ||||| ||||||||||||||||| |||||||||||| ||||||||| ||||||| || |
|
|
| T |
30125328 |
ttcaattgacttggagattttcccattgagagctaataagtgggaggaaattgagtttgattctcatttgccttataggaatactgctcgctctaacgga |
30125229 |
T |
|
| Q |
183 |
ggtcccagagttgggtcgttcttgaatggttctattcattggctgatttatgatgataagactgaaatggatgttattattgcctttgatttaaaggaaa |
282 |
Q |
| |
|
| ||||||||||||| |||||||||||| |||||||||||||| || || || || |||| | | |||||||||| |||||||||||||||||||| |
|
|
| T |
30125228 |
tggcccagagttgggttgttcttgaatgggactattcattggctggttcataatcatgagaccaacaaggatgttattgttgcctttgatttaaaggaag |
30125129 |
T |
|
| Q |
283 |
tgacactgtcagagactgctctcccagatggtttttatagtgattactctactagaatttatgatttgatggtatttggcagacttattagtgtatggaa |
382 |
Q |
| |
|
|||| ||||||| | ||||| ||| ||| |||||||| ||||||||| || | |||||||||| | |||||||| ||||||| ||| |||||| |
|
|
| T |
30125128 |
cgacaatgtcagaaatagctcttccaaatgatttttataccgattactctcctgtagattatgatttgttagtatttggtggacttatcagtttatggat |
30125029 |
T |
|
| Q |
383 |
tatggagatgcctacacttaagatatgggtgatgcaagaatacacaat |
430 |
Q |
| |
|
| | |||||| | || |||||||| |||||||||| |||||| |||| |
|
|
| T |
30125028 |
tcttgagatggatgcagttaagatacgggtgatgcatgaatacgcaat |
30124981 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 212 - 327
Target Start/End: Complemental strand, 28181080 - 28180965
Alignment:
| Q |
212 |
ttctattcattggctgatttatgatgataagactgaaatggatgttattattgcctttgatttaaaggaaatgacactgtcagagactgctctcccagat |
311 |
Q |
| |
|
|||||||||||||||| ||||| || || |||| |||| | |||||||||||||||||||||||||||||||||| ||||||| | ||||| |||||| |
|
|
| T |
28181080 |
ttctattcattggctggtttataattatgagaccaaaattggtgttattattgcctttgatttaaaggaaatgacaatgtcagatatagctcttccagat |
28180981 |
T |
|
| Q |
312 |
ggtttttatagtgatt |
327 |
Q |
| |
|
| ||||||||| |||| |
|
|
| T |
28180980 |
gatttttatagggatt |
28180965 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 187 - 297
Target Start/End: Complemental strand, 30131178 - 30131068
Alignment:
| Q |
187 |
ccagagttgggtcgttcttgaatggttctattcattggctgatttatgatgataagactgaaatggatgttattattgcctttgatttaaaggaaatgac |
286 |
Q |
| |
|
||||||| |||| |||||||||||| |||||||||||||| ||||| || || |||| || |||||||||||| |||||| |||||||||||||||| |
|
|
| T |
30131178 |
ccagagtcgggttgttcttgaatggggctattcattggctggtttataattatgagacaagaagggatgttattatagcctttaatttaaaggaaatgac |
30131079 |
T |
|
| Q |
287 |
actgtcagaga |
297 |
Q |
| |
|
| ||||||||| |
|
|
| T |
30131078 |
aatgtcagaga |
30131068 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 191 - 297
Target Start/End: Complemental strand, 30120174 - 30120068
Alignment:
| Q |
191 |
agttgggtcgttcttgaatggttctattcattggctgatttatgatgataagactgaaatggatgttattattgcctttgatttaaaggaaatgacactg |
290 |
Q |
| |
|
|||||||| |||||||||||| ||||||||||| || || || || || |||| | ||| |||||||||||||||||||||||||||||| |||| | |
|
|
| T |
30120174 |
agttgggttgttcttgaatggggctattcattgggtggttcataatcatgagaccaacatgaatgttattattgcctttgatttaaaggaaacgacaata |
30120075 |
T |
|
| Q |
291 |
tcagaga |
297 |
Q |
| |
|
||||||| |
|
|
| T |
30120074 |
tcagaga |
30120068 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 74 - 119
Target Start/End: Complemental strand, 28180559 - 28180514
Alignment:
| Q |
74 |
ggtatctagttcaattgacttggagatgttctcattgagaggtaat |
119 |
Q |
| |
|
|||||||||||||||||| || ||||| ||||||||||||| |||| |
|
|
| T |
28180559 |
ggtatctagttcaattgaattagagattttctcattgagagctaat |
28180514 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 395 - 428
Target Start/End: Complemental strand, 30130967 - 30130934
Alignment:
| Q |
395 |
tacacttaagatatgggtgatgcaagaatacaca |
428 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||| |
|
|
| T |
30130967 |
tacagttaagatatgggtgatgcaagaatacaca |
30130934 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 54; Significance: 8e-22; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 79 - 312
Target Start/End: Original strand, 21426470 - 21426703
Alignment:
| Q |
79 |
ctagttcaattgacttggagatgttctcattgagaggtaatcaatgggaacaaattgagtttgattctgatttgccttataagaatactgcaagctctaa |
178 |
Q |
| |
|
||||||||||||||||| |||| ||||||||||||| | || ||||| ||||||||||| ||| |||| |||||||||||| | ||||| || | | |
|
|
| T |
21426470 |
ctagttcaattgacttgaagattttctcattgagagctcataaatggaaacaaattgaggttgcttctcatttgccttatatcattactgatgtctatga |
21426569 |
T |
|
| Q |
179 |
tggtggtcccagagttgggtcgttcttgaatggttctattcattggctgatttatgatgataagactgaaatggatgttattattgcctttgatttaaag |
278 |
Q |
| |
|
| | |||||||| ||||||||||| ||||| |||||||||||||| || || || | |||| | |||||||||||||||| ||||||||||| |
|
|
| T |
21426570 |
atttcggcccagagtcgggtcgttcttaaatggggctattcattggctggttcataattctgagaccaaccgggatgttattattgcccttgatttaaag |
21426669 |
T |
|
| Q |
279 |
gaaatgacactgtcagagactgctctcccagatg |
312 |
Q |
| |
|
|||| ||| ||||||||| ||||| ||||||| |
|
|
| T |
21426670 |
gaaacaacaatgtcagagatagctcttccagatg |
21426703 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 74 - 158
Target Start/End: Original strand, 21430161 - 21430244
Alignment:
| Q |
74 |
ggtatctagttcaattgacttggagatgttctcattgagaggtaatcaatgggaacaaattgagtttgattctgatttgccttat |
158 |
Q |
| |
|
||||||||||||||||||||| ||||| ||||||||||||| |||||||| |||| |||||||| ||| |||| ||||||||||| |
|
|
| T |
21430161 |
ggtatctagttcaattgacttagagattttctcattgagagctaatcaat-ggaaaaaattgaggttgcttctcatttgccttat |
21430244 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1051 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold1051
Description:
Target: scaffold1051; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 89 - 157
Target Start/End: Complemental strand, 2039 - 1971
Alignment:
| Q |
89 |
tgacttggagatgttctcattgagaggtaatcaatgggaacaaattgagtttgattctgatttgcctta |
157 |
Q |
| |
|
|||||||||||| ||||||||||||| |||| | ||| ||||||||||||||| |||| ||||||||| |
|
|
| T |
2039 |
tgacttggagattttctcattgagagctaataagtggaaacaaattgagtttggttctcctttgcctta |
1971 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University