View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7708A_low_100 (Length: 300)
Name: NF7708A_low_100
Description: NF7708A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7708A_low_100 |
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Alignment Details
Target: chr1 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 20 - 288
Target Start/End: Original strand, 45123006 - 45123274
Alignment:
| Q |
20 |
agaacaagataagcaaggttgcttcgtgatctttgcaagaagaacaaggtgattcctccacttatttactttattgcttgacaagtcttgtaggtgacaa |
119 |
Q |
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| T |
45123006 |
agaacaagataaacaaggttgtttcgtgatctttgtaagaagaacaagatgattcctccacttgtttactttattgcttgacaagtcttgtaggtgacaa |
45123105 |
T |
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| Q |
120 |
tattgtttcttgaagtgcaaaacaaacaaagtgatacttatatataagctcgatttctgtatttcaagatgcatcagtcagaaatattttaagtatatat |
219 |
Q |
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| T |
45123106 |
tattgtttcttgaagtgcaagacaaacaaagtgatacctatatataagctcgatttctgtatttcaagatacatcaatcagaaatattttaagtatatat |
45123205 |
T |
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| Q |
220 |
atgaattttatcttttctattatactcttgcggtagagtgttgtagatatagtttggtattgctttgga |
288 |
Q |
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| T |
45123206 |
ctgaattttatcttttctattatactcttgcggtagagtgttgtagatatagtttggtattgctttgga |
45123274 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 64 - 113
Target Start/End: Original strand, 34980546 - 34980595
Alignment:
| Q |
64 |
caaggtgattcctccacttatttactttattgcttgacaagtcttgtagg |
113 |
Q |
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| T |
34980546 |
caaggtgattccttcacttgtttactttcttgcttggcaagtcttgtagg |
34980595 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 65 - 137
Target Start/End: Complemental strand, 15549756 - 15549684
Alignment:
| Q |
65 |
aaggtgattcctccacttatttactttattgcttgacaagtcttgtaggtgacaatattgtttcttgaagtgc |
137 |
Q |
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| T |
15549756 |
aaggtggttcattcacttgtttcctttcttgcatgacaagtattgtaggccacaatgttgtttcttgaagtgc |
15549684 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 158 - 245
Target Start/End: Complemental strand, 35397486 - 35397399
Alignment:
| Q |
158 |
tatatataagctcgatttctgtatttcaagatgcatcagtcagaaatattttaagtatatatatgaattttatcttttctattatact |
245 |
Q |
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| T |
35397486 |
tatatataaactctctttctttattataagatgcatcagtcagaaacattttaagtttatatgtgacattttccttttctcttatact |
35397399 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 93 - 149
Target Start/End: Complemental strand, 12467205 - 12467149
Alignment:
| Q |
93 |
ttgcttgacaagtcttgtaggtgacaatattgtttcttgaagtgcaaaacaaacaaa |
149 |
Q |
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| T |
12467205 |
ttgcttgataagttttgtaggccacaagcttgtttcttgaagtgcaagacaaacaaa |
12467149 |
T |
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