View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7708A_low_101 (Length: 296)

Name: NF7708A_low_101
Description: NF7708A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7708A_low_101
NF7708A_low_101
[»] chr6 (19 HSPs)
chr6 (1-296)||(25195371-25195657)
chr6 (1-189)||(5724635-5724816)
chr6 (1-189)||(4910807-4910988)
chr6 (215-296)||(10564933-10565014)
chr6 (16-118)||(6654110-6654214)
chr6 (115-166)||(9922382-9922433)
chr6 (219-290)||(13687591-13687662)
chr6 (116-154)||(765499-765537)
chr6 (120-189)||(6896049-6896118)
chr6 (16-90)||(7952729-7952805)
chr6 (124-185)||(7952830-7952891)
chr6 (219-260)||(10874325-10874366)
chr6 (1-99)||(26280585-26280685)
chr6 (118-167)||(33136598-33136647)
chr6 (219-263)||(7486424-7486468)
chr6 (121-189)||(10400814-10400882)
chr6 (133-189)||(31710512-31710568)
chr6 (121-185)||(34620789-34620853)
chr6 (121-185)||(34748226-34748290)
[»] scaffold0168 (1 HSPs)
scaffold0168 (28-189)||(31725-31879)
[»] chr4 (31 HSPs)
chr4 (116-185)||(46344944-46345013)
chr4 (120-189)||(21691337-21691406)
chr4 (16-189)||(35064962-35065128)
chr4 (1-107)||(32818375-32818483)
chr4 (132-189)||(50061764-50061821)
chr4 (191-271)||(24921479-24921558)
chr4 (118-189)||(54705506-54705577)
chr4 (116-189)||(2635062-2635135)
chr4 (219-296)||(43628117-43628194)
chr4 (120-189)||(49138952-49139021)
chr4 (1-189)||(16551856-16552035)
chr4 (1-81)||(9064229-9064311)
chr4 (4-108)||(26617439-26617545)
chr4 (28-104)||(50061660-50061738)
chr4 (219-296)||(4014167-4014244)
chr4 (16-82)||(30357509-30357577)
chr4 (120-189)||(33456273-33456342)
chr4 (219-296)||(33560579-33560656)
chr4 (1-62)||(45011893-45011954)
chr4 (16-81)||(8604642-8604709)
chr4 (219-255)||(11271587-11271623)
chr4 (120-172)||(31013850-31013902)
chr4 (118-149)||(39211087-39211118)
chr4 (226-296)||(22683870-22683940)
chr4 (219-296)||(25319047-25319124)
chr4 (116-189)||(48045814-48045888)
chr4 (120-189)||(2326928-2326997)
chr4 (116-165)||(26617740-26617789)
chr4 (1-46)||(39386668-39386713)
chr4 (219-271)||(29904013-29904065)
chr4 (220-296)||(35995229-35995304)
[»] chr1 (27 HSPs)
chr1 (17-189)||(28083909-28084074)
chr1 (1-78)||(30557505-30557582)
chr1 (116-185)||(45660862-45660930)
chr1 (1-107)||(47321912-47322019)
chr1 (1-82)||(11049247-11049330)
chr1 (16-96)||(1514326-1514408)
chr1 (116-167)||(47892501-47892552)
chr1 (16-62)||(34721860-34721906)
chr1 (1-107)||(30850404-30850511)
chr1 (1-82)||(7790647-7790730)
chr1 (121-189)||(30557415-30557483)
chr1 (120-180)||(36780234-36780294)
chr1 (222-273)||(5407803-5407854)
chr1 (118-189)||(15478116-15478187)
chr1 (214-296)||(32088584-32088664)
chr1 (237-296)||(48832907-48832966)
chr1 (1-104)||(6021779-6021884)
chr1 (221-263)||(10324766-10324808)
chr1 (214-296)||(39289272-39289354)
chr1 (1-62)||(7524132-7524193)
chr1 (121-174)||(30234608-30234661)
chr1 (219-296)||(35592496-35592572)
chr1 (20-82)||(50571281-50571345)
chr1 (121-189)||(8381883-8381951)
chr1 (2-42)||(14334069-14334109)
chr1 (16-81)||(34387713-34387780)
chr1 (121-189)||(35681829-35681897)
[»] chr3 (18 HSPs)
chr3 (16-99)||(25359594-25359679)
chr3 (1-82)||(52364048-52364131)
chr3 (118-189)||(1290680-1290751)
chr3 (136-189)||(52363964-52364017)
chr3 (219-271)||(21513380-21513432)
chr3 (118-186)||(52925726-52925794)
chr3 (219-269)||(23290292-23290342)
chr3 (219-269)||(49634075-49634125)
chr3 (121-190)||(3776437-3776506)
chr3 (124-189)||(3845233-3845298)
chr3 (221-294)||(7298328-7298400)
chr3 (120-189)||(52141362-52141431)
chr3 (1-60)||(31708244-31708303)
chr3 (63-105)||(7717390-7717432)
chr3 (122-164)||(38332656-38332698)
chr3 (118-167)||(7262819-7262868)
chr3 (1-62)||(32523345-32523406)
chr3 (24-81)||(35058065-35058124)
[»] chr7 (13 HSPs)
chr7 (1-107)||(41386820-41386928)
chr7 (219-296)||(18349774-18349851)
chr7 (219-263)||(36271329-36271373)
chr7 (1-189)||(40491477-40491658)
chr7 (124-163)||(45997431-45997470)
chr7 (2-60)||(1410983-1411041)
chr7 (1-51)||(42816473-42816523)
chr7 (127-189)||(46325574-46325636)
chr7 (118-163)||(41841088-41841133)
chr7 (219-296)||(42675059-42675136)
chr7 (121-190)||(45004883-45004952)
chr7 (121-189)||(38123766-38123834)
chr7 (118-166)||(48158813-48158861)
[»] chr2 (26 HSPs)
chr2 (19-117)||(2002718-2002818)
chr2 (1-107)||(10644575-10644683)
chr2 (1-107)||(33019161-33019269)
chr2 (219-295)||(37561706-37561782)
chr2 (118-189)||(33047667-33047738)
chr2 (219-271)||(44810374-44810426)
chr2 (226-296)||(32827519-32827590)
chr2 (219-269)||(3654930-3654980)
chr2 (1-61)||(8800703-8800763)
chr2 (118-189)||(9943322-9943393)
chr2 (219-270)||(29823508-29823559)
chr2 (1-81)||(42740975-42741057)
chr2 (120-166)||(8481391-8481437)
chr2 (126-188)||(30503109-30503171)
chr2 (120-190)||(32595894-32595964)
chr2 (219-269)||(37402269-37402319)
chr2 (124-189)||(11759941-11760006)
chr2 (226-271)||(28028848-28028893)
chr2 (219-296)||(44439253-44439330)
chr2 (16-81)||(3352074-3352141)
chr2 (121-189)||(7629761-7629829)
chr2 (16-60)||(12037082-12037126)
chr2 (120-164)||(15928551-15928595)
chr2 (219-255)||(43073975-43074011)
chr2 (116-148)||(43501083-43501115)
chr2 (219-255)||(43501125-43501160)
[»] scaffold0314 (1 HSPs)
scaffold0314 (121-189)||(17325-17393)
[»] chr5 (28 HSPs)
chr5 (1-118)||(38845404-38845523)
chr5 (1-82)||(42858105-42858188)
chr5 (4-107)||(5468745-5468851)
chr5 (118-189)||(11647981-11648052)
chr5 (118-189)||(18851197-18851268)
chr5 (120-189)||(22226353-22226422)
chr5 (219-296)||(42439626-42439703)
chr5 (1-81)||(6951310-6951392)
chr5 (1-96)||(9818717-9818815)
chr5 (221-296)||(12432962-12433037)
chr5 (116-167)||(25548439-25548490)
chr5 (117-187)||(3043118-3043188)
chr5 (136-189)||(38845644-38845697)
chr5 (120-189)||(39097163-39097232)
chr5 (219-271)||(3970434-3970486)
chr5 (121-165)||(12404997-12405041)
chr5 (16-81)||(14299328-14299395)
chr5 (121-189)||(15368142-15368210)
chr5 (16-99)||(13171780-13171866)
chr5 (1-81)||(18851087-18851169)
chr5 (219-270)||(34195211-34195262)
chr5 (119-166)||(35108161-35108208)
chr5 (219-257)||(1102133-1102171)
chr5 (219-293)||(42194543-42194617)
chr5 (118-163)||(7637497-7637542)
chr5 (219-296)||(29923241-29923318)
chr5 (219-271)||(11599632-11599684)
chr5 (219-283)||(17862505-17862569)
[»] chr8 (23 HSPs)
chr8 (1-105)||(37684379-37684485)
chr8 (4-107)||(38868470-38868575)
chr8 (132-189)||(44141186-44141243)
chr8 (5-104)||(44141059-44141160)
chr8 (5-99)||(4662912-4663008)
chr8 (1-168)||(13384659-13384819)
chr8 (116-189)||(15677911-15677984)
chr8 (1-82)||(26100151-26100234)
chr8 (121-189)||(32100972-32101040)
chr8 (1-118)||(32927853-32927972)
chr8 (220-263)||(39648381-39648424)
chr8 (1-58)||(38868766-38868823)
chr8 (220-292)||(11791746-11791818)
chr8 (16-117)||(16972084-16972187)
chr8 (121-189)||(39648263-39648331)
chr8 (8-52)||(40769379-40769423)
chr8 (1-60)||(32101094-32101153)
chr8 (116-163)||(32994337-32994384)
chr8 (4-57)||(6027057-6027110)
chr8 (16-82)||(32994262-32994330)
chr8 (116-165)||(42455835-42455884)
chr8 (219-255)||(1836262-1836298)
chr8 (116-164)||(5859178-5859226)
[»] scaffold0197 (1 HSPs)
scaffold0197 (130-185)||(31542-31597)
[»] scaffold0024 (1 HSPs)
scaffold0024 (222-296)||(23602-23675)


Alignment Details
Target: chr6 (Bit Score: 256; Significance: 1e-142; HSPs: 19)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 1 - 296
Target Start/End: Original strand, 25195371 - 25195657
Alignment:
Q  1 aagtgagttgaattgtaaatttgtgtatgaaaatcaattatagaatgaaaaactacaaatccgcttcaagtagaatcaattccggaggcagaatcaatta 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25195371 aagtgagttgaattgtaaatttgtgtatgaaaatcaattatagaatgaaaaactacaaatccgcttcaagtagaatcaattccggaggcagaatcaatta 25195470  T
Q  101 tactcgatggcaaccaaagcaaccaaacatgtcagaatcaattatacacatccataatcaattttggttcctctagaagtggaaccaaattttggtttca 200  Q
    ||||||||         ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  25195471 tactcgat---------agcaaccaaacatgtcagaatcaattatacacatccagaatcaattttggttcctctagaagtggaaccaaattttggtttca 25195561  T
Q  201 agtttggaggaggcaaatttgattctaacttgaaactaggatttgtagcttttgactccaaacgtgattttcatactaaaattcattgttcaactc 296  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25195562 agtttggaggaggcaaatttgattctaacttgaaactaggatctgtagcttttgactccaaacgtgattttcatactaaaattcattgttcaactc 25195657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 189
Target Start/End: Original strand, 5724635 - 5724816
Alignment:
Q  1 aagtgagttgaattgtaaatttgtgtatgaaaatcaattatagaatgaaaaactacaaatcc--gcttcaagtagaatcaattccggaggcagaatcaat 98  Q
    ||||||||| |||  || |||||||| | ||||||||||||||||| ||||  |||||||||  |||||||||||||||||||  ||||||| |||||||    
T  5724635 aagtgagttaaatgatatatttgtgtgtaaaaatcaattatagaataaaaagttacaaatcctagcttcaagtagaatcaattttggaggcaaaatcaat 5724734  T
Q  99 tatactcgatggcaaccaaagcaaccaaacatgtcagaatcaattatacacatccataatcaattttggttcctctagaagtggaaccaaa 189  Q
    | |||  |         |||||| ||||||||||||||||||||| ||||| || | ||| ||||||||  ||||||||||||||||||||    
T  5724735 tctacctg---------aaagcatccaaacatgtcagaatcaattctacacttctagaattaattttggcccctctagaagtggaaccaaa 5724816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 189
Target Start/End: Complemental strand, 4910988 - 4910807
Alignment:
Q  1 aagtgagttgaattgtaaatttgtgtatgaaaatcaattatagaatgaaaaactacaaatc--cgcttcaagtagaatcaattccggaggcagaatcaat 98  Q
    |||||||| ||| | ||||||||| | |||||||||||| |||||| |||| |||||||||   |||||||||||||||||||   ||||||||||||||    
T  4910988 aagtgagtcgaactataaatttgtatgtgaaaatcaattctagaatcaaaagctacaaatcatagcttcaagtagaatcaatttttgaggcagaatcaat 4910889  T
Q  99 tatactcgatggcaaccaaagcaaccaaacatgtcagaatcaattatacacatccataatcaattttggttcctctagaagtggaaccaaa 189  Q
    | || | || |          |||||||||||||||||||||||| ||||||| || |||||||| | ||  ||||| |||||||||||||    
T  4910888 tctaattgacg---------acaaccaaacatgtcagaatcaattctacacattcagaatcaattatagtctctctaaaagtggaaccaaa 4910807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 215 - 296
Target Start/End: Complemental strand, 10565014 - 10564933
Alignment:
Q  215 aaatttgattctaacttgaaactaggatttgtagcttttgactccaaacgtgattttcatactaaaattcattgttcaactc 296  Q
    ||||| ||||||||||||||  |||||||||||||||||||||| ||| |||||||| |  ||||| || ||||||||||||    
T  10565014 aaattcgattctaacttgaagttaggatttgtagcttttgactcaaaatgtgattttaacgctaaagtttattgttcaactc 10564933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 16 - 118
Target Start/End: Original strand, 6654110 - 6654214
Alignment:
Q  16 taaatttgtgtatgaaaatcaattatagaatgaaaaactacaaatcc--gcttcaagtagaatcaattccggaggcagaatcaattatactcgatggcaa 113  Q
    ||||||| ||| |||||||||| | |||||| |||| ||||||||||  |||||||||||||| ||||| | ||| | |||||||| ||||| || ||||    
T  6654110 taaatttctgtgtgaaaatcaaatctagaattaaaagctacaaatcctagcttcaagtagaattaattctgaaggaaaaatcaattctactcaatagcaa 6654209  T
Q  114 ccaaa 118  Q
    |||||    
T  6654210 ccaaa 6654214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 115 - 166
Target Start/End: Complemental strand, 9922433 - 9922382
Alignment:
Q  115 caaagcaaccaaacatgtcagaatcaattatacacatccataatcaattttg 166  Q
    ||||| |||||||||| ||| ||||||||||||||||| | |||||||||||    
T  9922433 caaagaaaccaaacatatcaaaatcaattatacacatcaagaatcaattttg 9922382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 219 - 290
Target Start/End: Original strand, 13687591 - 13687662
Alignment:
Q  219 ttgattctaacttgaaactaggatttgtagcttttgactccaaacgtgattttcatactaaaattcattgtt 290  Q
    ||||||||||||||||  ||||| ||||||||| || |||||||  ||||||||| ||| ||||| ||||||    
T  13687591 ttgattctaacttgaagataggacttgtagcttctgtctccaaatatgattttcacactcaaatttattgtt 13687662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 116 - 154
Target Start/End: Original strand, 765499 - 765537
Alignment:
Q  116 aaagcaaccaaacatgtcagaatcaattatacacatcca 154  Q
    |||||||||||||| ||||||||||||| ||||||||||    
T  765499 aaagcaaccaaacacgtcagaatcaattctacacatcca 765537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 120 - 189
Target Start/End: Original strand, 6896049 - 6896118
Alignment:
Q  120 caaccaaacatgtcagaatcaattatacacatccataatcaattttggttcctctagaagtggaaccaaa 189  Q
    ||||||||||||||| |||||||| ||||  |||| ||||| |||| ||  || ||||||||||||||||    
T  6896049 caaccaaacatgtcataatcaattctacatctccagaatcattttttgtcactttagaagtggaaccaaa 6896118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 90
Target Start/End: Original strand, 7952729 - 7952805
Alignment:
Q  16 taaatttgtgtatgaaaatcaattatagaatgaaaaactacaaatc--cgcttcaagtagaatcaattccggaggca 90  Q
    ||||||||||| |||||  ||||| |||||| |||| |||||||||  ||||||||||||||| ||||  |||||||    
T  7952729 taaatttgtgtgtgaaacccaattctagaatcaaaagctacaaatcctcgcttcaagtagaataaattttggaggca 7952805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 124 - 185
Target Start/End: Original strand, 7952830 - 7952891
Alignment:
Q  124 caaacatgtcagaatcaattatacacatccataatcaattttggttcctctagaagtggaac 185  Q
    ||||||||||| |||||||| ||||| |||||||| |||||| |   |||||||||||||||    
T  7952830 caaacatgtcataatcaattttacacctccataattaattttagcctctctagaagtggaac 7952891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 219 - 260
Target Start/End: Complemental strand, 10874366 - 10874325
Alignment:
Q  219 ttgattctaacttgaaactaggatttgtagcttttgactcca 260  Q
    |||||||||||||||||| |  ||||||||||||||||||||    
T  10874366 ttgattctaacttgaaacaataatttgtagcttttgactcca 10874325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 26280685 - 26280585
Alignment:
Q  1 aagtgagttgaattgtaaatttgtgtatgaaaatcaattatagaatgaaaaactacaaatcc--gcttcaagtagaatcaattccggaggcagaatcaat 98  Q
    ||||||||| || | |||||||||   | |||||||||| | |||| ||||||||||||| |  ||||||||| ||||||||||  |||||| |||||||    
T  26280685 aagtgagtttaactataaatttgtacgtaaaaatcaattttggaatcaaaaactacaaattctagcttcaagtggaatcaattcttgaggcaaaatcaat 26280586  T
Q  99 t 99  Q
    |    
T  26280585 t 26280585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 118 - 167
Target Start/End: Original strand, 33136598 - 33136647
Alignment:
Q  118 agcaaccaaacatgtcagaatcaattatacacatccataatcaattttgg 167  Q
    ||||||||||||||||| |||||||||||||| || | ||| ||||||||    
T  33136598 agcaaccaaacatgtcaaaatcaattatacacctctagaattaattttgg 33136647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 219 - 263
Target Start/End: Original strand, 7486424 - 7486468
Alignment:
Q  219 ttgattctaacttgaaactaggatttgtagcttttgactccaaac 263  Q
    |||||| ||||||||||||| ||||||||| ||||| ||||||||    
T  7486424 ttgattttaacttgaaactatgatttgtagtttttgcctccaaac 7486468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 121 - 189
Target Start/End: Original strand, 10400814 - 10400882
Alignment:
Q  121 aaccaaacatgtcagaatcaattatacacatccataatcaattttggttcctctagaagtggaaccaaa 189  Q
    |||||||||| ||| |||||||||||||| || | |||||||||||  ||||| |  ||||||||||||    
T  10400814 aaccaaacatatcaaaatcaattatacacctctagaatcaattttgcatcctccaagagtggaaccaaa 10400882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 133 - 189
Target Start/End: Original strand, 31710512 - 31710568
Alignment:
Q  133 cagaatcaattatacacatccataatcaattttggttcctctagaagtggaaccaaa 189  Q
    ||||||||||| |||||||||| |||||||| ||||  ||||| ||| |||||||||    
T  31710512 cagaatcaattctacacatccacaatcaattatggtctctctaaaagaggaaccaaa 31710568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 121 - 185
Target Start/End: Complemental strand, 34620853 - 34620789
Alignment:
Q  121 aaccaaacatgtcagaatcaattatacacatccataatcaattttggttcctctagaagtggaac 185  Q
    |||||||||||||| |||||||| ||||| |  | |||||||||||| ||||| | |||||||||    
T  34620853 aaccaaacatgtcaaaatcaattctacacctttagaatcaattttgggtcctccaaaagtggaac 34620789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 121 - 185
Target Start/End: Complemental strand, 34748290 - 34748226
Alignment:
Q  121 aaccaaacatgtcagaatcaattatacacatccataatcaattttggttcctctagaagtggaac 185  Q
    |||||||||||||| |||||||| ||||| |  | |||||||||||| ||||| | |||||||||    
T  34748290 aaccaaacatgtcaaaatcaattctacacctttagaatcaattttgggtcctccaaaagtggaac 34748226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0168 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: scaffold0168
Description:

Target: scaffold0168; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 28 - 189
Target Start/End: Complemental strand, 31879 - 31725
Alignment:
Q  28 tgaaaatcaattatagaatgaaaaactacaaatcc--gcttcaagtagaatcaattccggaggcagaatcaattatactcgatggcaaccaaagcaacca 125  Q
    ||||||||||||  | ||| |||| ||||||||||  |||||||||| ||||||||  |||||||||||||||| |||||||       |||  ||||||    
T  31879 tgaaaatcaattcaataatcaaaagctacaaatcctagcttcaagtataatcaattttggaggcagaatcaattttactcga-------caa--caacca 31789  T
Q  126 aacatgtcagaatcaattatacacatccataatcaattttggttcctctagaagtggaaccaaa 189  Q
    |||||||||||||||||| ||||| || | |||||||||||||  |||||||||||||||||||    
T  31788 aacatgtcagaatcaattctacacctctagaatcaattttggtcactctagaagtggaaccaaa 31725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 54; Significance: 5e-22; HSPs: 31)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 116 - 185
Target Start/End: Original strand, 46344944 - 46345013
Alignment:
Q  116 aaagcaaccaaacatgtcagaatcaattatacacatccataatcaattttggttcctctagaagtggaac 185  Q
    ||||||||||||||||||||||| |||||||||| |||||||||||||||||  ||||||||||||||||    
T  46344944 aaagcaaccaaacatgtcagaattaattatacacctccataatcaattttgggccctctagaagtggaac 46345013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 120 - 189
Target Start/End: Original strand, 21691337 - 21691406
Alignment:
Q  120 caaccaaacatgtcagaatcaattatacacatccataatcaattttggttcctctagaagtggaaccaaa 189  Q
    |||||||| ||||||||||||||| ||||| |||| |||||||| |||| ||||||||||||||||||||    
T  21691337 caaccaaatatgtcagaatcaattctacacctccagaatcaattctggtccctctagaagtggaaccaaa 21691406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 16 - 189
Target Start/End: Complemental strand, 35065128 - 35064962
Alignment:
Q  16 taaatttgtgtatgaaaatcaattatagaatgaaaaactacaaatcc--gcttcaagtagaatcaattccggaggcagaatcaattatactcgatggcaa 113  Q
    ||||||||||| | |||||||||| |||||| ||||   |||||| |  |||||||||| ||||||||   |||||| |||||||| |||||||          
T  35065128 taaatttgtgtgtaaaaatcaattctagaatcaaaagtcacaaatactagcttcaagtaaaatcaattattgaggcaaaatcaattctactcga------ 35065035  T
Q  114 ccaaagcaaccaaacatgtcagaatcaattatacacatccataatcaattttggttcctctagaagtggaaccaaa 189  Q
       ||||||||||| |||||| |||||||| ||||| ||||||||||||||||   |||| |||||||||||||||    
T  35065034 ---aagcaaccaaaaatgtcataatcaattctacacctccataatcaattttgacccctcgagaagtggaaccaaa 35064962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 1 - 107
Target Start/End: Original strand, 32818375 - 32818483
Alignment:
Q  1 aagtgagttgaattgtaaatttgtgtatgaaaatcaattatagaatgaaaaactacaaatcc--gcttcaagtagaatcaattccggaggcagaatcaat 98  Q
    |||| ||||||| | |||||||||||   |||||||||| |||||| |||| |||||||| |  ||||||| |||||||||||| ||||||| |||||||    
T  32818375 aagttagttgaactataaatttgtgtgcaaaaatcaattctagaatcaaaagctacaaattctagcttcaaatagaatcaattctggaggcaaaatcaat 32818474  T
Q  99 tatactcga 107  Q
    | |||||||    
T  32818475 tctactcga 32818483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 132 - 189
Target Start/End: Original strand, 50061764 - 50061821
Alignment:
Q  132 tcagaatcaattatacacatccataatcaattttggttcctctagaagtggaaccaaa 189  Q
    |||||||||||| || || |||| ||||||||||||||||||||||||||||||||||    
T  50061764 tcagaatcaattctagacctccagaatcaattttggttcctctagaagtggaaccaaa 50061821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 191 - 271
Target Start/End: Complemental strand, 24921558 - 24921479
Alignment:
Q  191 tttggtttcaagtttggaggaggcaaatttgattctaacttgaaactaggatttgtagcttttgactccaaacgtgatttt 271  Q
    ||||||||||| |||| | |||||||| ||||||||||||||||||| | ||||||||||||||||| || || |||||||    
T  24921558 tttggtttcaa-tttgaatgaggcaaaattgattctaacttgaaacttgaatttgtagcttttgacttcatacatgatttt 24921479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 118 - 189
Target Start/End: Original strand, 54705506 - 54705577
Alignment:
Q  118 agcaaccaaacatgtcagaatcaattatacacatccataatcaattttggttcctctagaagtggaaccaaa 189  Q
    |||||||||||||||| |||||||||||| || | ||||  |||||||||  ||||||||||||||||||||    
T  54705506 agcaaccaaacatgtctgaatcaattatataccttcatagccaattttggcccctctagaagtggaaccaaa 54705577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 116 - 189
Target Start/End: Complemental strand, 2635135 - 2635062
Alignment:
Q  116 aaagcaaccaaacatgtcagaatcaattatacacatccataatcaattttggttcctctagaagtggaaccaaa 189  Q
    ||||||| ||||||||||| |||||||| ||||| || | ||||||||||||| |||||| ||||| |||||||    
T  2635135 aaagcaatcaaacatgtcaaaatcaattttacacttctagaatcaattttggtccctctaaaagtgaaaccaaa 2635062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 219 - 296
Target Start/End: Original strand, 43628117 - 43628194
Alignment:
Q  219 ttgattctaacttgaaactaggatttgtagcttttgactccaaacgtgattttcatactaaaattcattgttcaactc 296  Q
    |||||||||| ||||| ||| ||||||||| |||||||||||||| ||||||| | | | ||||| ||||||||||||    
T  43628117 ttgattctaagttgaagctaagatttgtagattttgactccaaacatgattttaacatttaaatttattgttcaactc 43628194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 120 - 189
Target Start/End: Original strand, 49138952 - 49139021
Alignment:
Q  120 caaccaaacatgtcagaatcaattatacacatccataatcaattttggttcctctagaagtggaaccaaa 189  Q
    |||||||||||||||||||||||| ||||| || | ||||||||||||   || ||||||||||||||||    
T  49138952 caaccaaacatgtcagaatcaattctacacctctagaatcaattttggccactttagaagtggaaccaaa 49139021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 189
Target Start/End: Complemental strand, 16552035 - 16551856
Alignment:
Q  1 aagtgagttgaattgtaaatttgtgtatgaaaatcaattatagaatgaaaaactacaaatcc--gcttcaagtagaatcaattccggaggcagaatcaat 98  Q
    |||||||||||| | |||||||||||  ||||||||||| |||||  |||||||||||||||  |||||||| |||||| || |  ||||||||||||      
T  16552035 aagtgagttgaactataaatttgtgt--gaaaatcaattctagaactaaaaactacaaatcctagcttcaaggagaatccatcctagaggcagaatcagc 16551938  T
Q  99 tatactcgatggcaaccaaagcaaccaaacatgtcagaatcaattatacacatccataatcaattttggttcctctagaagtggaaccaaa 189  Q
    | || |||         | |||||||| ||||||||||||||||| ||||| || | ||||||||||| |  ||||  |||||||||||||    
T  16551937 tctattcg---------acagcaaccatacatgtcagaatcaattctacacctctaaaatcaattttgatctctctgaaagtggaaccaaa 16551856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 9064311 - 9064229
Alignment:
Q  1 aagtgagttgaattgtaaatttgtgtatgaaaatcaattatagaatgaaaaactacaaatcc--gcttcaagtagaatcaatt 81  Q
    ||||||||||||  ||||| ||| || |||||||||||| |||||| ||||||||||||| |  | |||||||||||||||||    
T  9064311 aagtgagttgaaccgtaaacttgagtgtgaaaatcaattctagaatcaaaaactacaaattctagtttcaagtagaatcaatt 9064229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 4 - 108
Target Start/End: Complemental strand, 26617545 - 26617439
Alignment:
Q  4 tgagttgaattgtaaatttgtgtatgaaaatcaattatagaatgaaaaactacaaatcc--gcttcaagtagaatcaattccggaggcagaatcaattat 101  Q
    ||||||||||| ||||||| | ||| |||||||||| || ||| |||| ||||| || |  |||||||||||||||| ||  ||||||| |||||||| |    
T  26617545 tgagttgaattataaatttatctataaaaatcaattttataatcaaaagctacagattctagcttcaagtagaatcatttttggaggcaaaatcaattct 26617446  T
Q  102 actcgat 108  Q
    |||||||    
T  26617445 actcgat 26617439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 28 - 104
Target Start/End: Original strand, 50061660 - 50061738
Alignment:
Q  28 tgaaaatcaattatagaatgaaaaactacaaatccg--cttcaagtagaatcaattccggaggcagaatcaattatact 104  Q
    |||||||||| | |||||| |||||||||||||||   ||||||||||||||||||  ||||||| |||||||| ||||    
T  50061660 tgaaaatcaactctagaatcaaaaactacaaatcctaacttcaagtagaatcaattttggaggcaaaatcaattctact 50061738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 219 - 296
Target Start/End: Original strand, 4014167 - 4014244
Alignment:
Q  219 ttgattctaacttgaaactaggatttgtagcttttgactccaaacgtgattttcatactaaaattcattgttcaactc 296  Q
    |||||||||||||||| ||| |||||  | ||||||||||||||||| ||||| | | ||||||| || |||||||||    
T  4014167 ttgattctaacttgaagctatgatttaaatcttttgactccaaacgtaatttttacagtaaaatttatggttcaactc 4014244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 16 - 82
Target Start/End: Complemental strand, 30357577 - 30357509
Alignment:
Q  16 taaatttgtgtatgaaaatcaattatagaatgaaaaactacaaat--ccgcttcaagtagaatcaattc 82  Q
    ||||||||||| | ||||||||||||| ||| |||| ||||||||  | ||||||||||||||||||||    
T  30357577 taaatttgtgtgtaaaaatcaattatataatcaaaagctacaaatcacagcttcaagtagaatcaattc 30357509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 120 - 189
Target Start/End: Complemental strand, 33456342 - 33456273
Alignment:
Q  120 caaccaaacatgtcagaatcaattatacacatccataatcaattttggttcctctagaagtggaaccaaa 189  Q
    |||| ||| |||||| |||||||| ||||||| || |||||||| | || ||||||||||||||||||||    
T  33456342 caacaaaatatgtcataatcaattctacacattcaaaatcaattatagtccctctagaagtggaaccaaa 33456273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 219 - 296
Target Start/End: Complemental strand, 33560656 - 33560579
Alignment:
Q  219 ttgattctaacttgaaactaggatttgtagcttttgactccaaacgtgattttcatactaaaattcattgttcaactc 296  Q
    |||||||||||   || |||||||||||||||||||| || ||| |||||||| | ||| | ||||||||||||||||    
T  33560656 ttgattctaaccgaaagctaggatttgtagcttttgagtctaaaagtgatttttaaactgacattcattgttcaactc 33560579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 45011954 - 45011893
Alignment:
Q  1 aagtgagttgaattgtaaatttgtgtatgaaaatcaattatagaatgaaaaactacaaatcc 62  Q
    ||||||||  |||| ||||||||||| |||||||||||| |||||| |||| ||||||||||    
T  45011954 aagtgagtaaaattataaatttgtgtgtgaaaatcaattctagaatcaaaagctacaaatcc 45011893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 81
Target Start/End: Original strand, 8604642 - 8604709
Alignment:
Q  16 taaatttgtgtatgaaaatcaattatagaatgaaaaactacaaatc--cgcttcaagtagaatcaatt 81  Q
    ||||||||||| |||||||||||| ||||||  ||| |||||||||   |||||||||||||||||||    
T  8604642 taaatttgtgtgtgaaaatcaattctagaatcgaaagctacaaatcttagcttcaagtagaatcaatt 8604709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 219 - 255
Target Start/End: Complemental strand, 11271623 - 11271587
Alignment:
Q  219 ttgattctaacttgaaactaggatttgtagcttttga 255  Q
    |||||||||||||||| ||||||||||||||||||||    
T  11271623 ttgattctaacttgaagctaggatttgtagcttttga 11271587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 120 - 172
Target Start/End: Original strand, 31013850 - 31013902
Alignment:
Q  120 caaccaaacatgtcagaatcaattatacacatccataatcaattttggttcct 172  Q
    ||||||||||||||| |||||||| |||||||| | |||||||| ||||||||    
T  31013850 caaccaaacatgtcaaaatcaattttacacatctaaaatcaattatggttcct 31013902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 118 - 149
Target Start/End: Original strand, 39211087 - 39211118
Alignment:
Q  118 agcaaccaaacatgtcagaatcaattatacac 149  Q
    ||||||||||||||||||||||||||||||||    
T  39211087 agcaaccaaacatgtcagaatcaattatacac 39211118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 226 - 296
Target Start/End: Original strand, 22683870 - 22683940
Alignment:
Q  226 taacttgaaactaggatttgtagcttttgactccaaacgtgattttcatactaaaattcattgttcaactc 296  Q
    ||||||||| ||| ||| |||||||||||| || |||||||||||| | | | ||||| ||||||||||||    
T  22683870 taacttgaagctatgatctgtagcttttgagtctaaacgtgatttttacattgaaatttattgttcaactc 22683940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 219 - 296
Target Start/End: Original strand, 25319047 - 25319124
Alignment:
Q  219 ttgattctaacttgaaactaggatttgtagcttttgactccaaacgtga-ttttcatactaaaattcattgttcaactc 296  Q
    ||||||||||||||||  ||||||||||||| ||||| || ||| |||| |||| ||||| ||||| ||||||||||||    
T  25319047 ttgattctaacttgaaggtaggatttgtagc-tttgagtctaaatgtgattttttatactgaaatttattgttcaactc 25319124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 116 - 189
Target Start/End: Original strand, 48045814 - 48045888
Alignment:
Q  116 aaagcaaccaaacatgtcagaatcaattatacacatccataatcaattttgg-ttcctctagaagtggaaccaaa 189  Q
    |||||||||||||||||| ||||||||| |||   || | ||||||||||||   ||||||||||||||||||||    
T  48045814 aaagcaaccaaacatgtccgaatcaattctacttctctagaatcaattttggccccctctagaagtggaaccaaa 48045888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 120 - 189
Target Start/End: Original strand, 2326928 - 2326997
Alignment:
Q  120 caaccaaacatgtcagaatcaattatacacatccataatcaattttggttcctctagaagtggaaccaaa 189  Q
    ||||||||||||||| |||||||| || || |||||||| |||| |||| || ||| ||||| |||||||    
T  2326928 caaccaaacatgtcataatcaattctatacctccataattaattatggtcccactaaaagtgaaaccaaa 2326997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 116 - 165
Target Start/End: Original strand, 26617740 - 26617789
Alignment:
Q  116 aaagcaaccaaacatgtcagaatcaattatacacatccataatcaatttt 165  Q
    |||||| |||||||||||| |||||||| |||||||| | ||||||||||    
T  26617740 aaagcatccaaacatgtcaaaatcaattttacacatctagaatcaatttt 26617789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 39386713 - 39386668
Alignment:
Q  1 aagtgagttgaattgtaaatttgtgtatgaaaatcaattatagaat 46  Q
    |||||||||||| | ||||| ||||| |||||||||||||||||||    
T  39386713 aagtgagttgaactttaaatatgtgtgtgaaaatcaattatagaat 39386668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 219 - 271
Target Start/End: Original strand, 29904013 - 29904065
Alignment:
Q  219 ttgattctaacttgaaactaggatttgtagcttttgactccaaacgtgatttt 271  Q
    |||||||||||||||| |||   |||||| |||||||||||||| ||||||||    
T  29904013 ttgattctaacttgaagctatattttgtaacttttgactccaaaagtgatttt 29904065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 220 - 296
Target Start/End: Original strand, 35995229 - 35995304
Alignment:
Q  220 tgattctaacttgaaactaggatttgtagcttttgactccaaacgtgattttcatactaaaattcattgttcaactc 296  Q
    ||||||||||||||| || ||||| |||| ||| |||| ||||| | ||||||| ||| ||||| ||||||||||||    
T  35995229 tgattctaacttgaagctcggattggtagttttagacttcaaacttaattttcacactcaaatt-attgttcaactc 35995304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 52; Significance: 8e-21; HSPs: 27)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 17 - 189
Target Start/End: Original strand, 28083909 - 28084074
Alignment:
Q  17 aaatttgtgtatgaaaatcaattatagaatgaaaaactacaaatcc--gcttcaagtagaatcaattccggaggcagaatcaattatactcgatggcaac 114  Q
    |||||||||| | ||||| ||||||||||| |||| |||||||| |  ||||||||||||||||||| || || || |||||||| ||||||            
T  28083909 aaatttgtgtgtaaaaattaattatagaatcaaaagctacaaattctagcttcaagtagaatcaattacgaagacaaaatcaattctactcg-------- 28084000  T
Q  115 caaagcaaccaaacatgtcagaatcaattatacacatccataatcaattttggttcctctagaagtggaaccaaa 189  Q
     ||| |||||||| ||||||||||||||| |||||  ||| | |||||||||| |||||||||||||||| ||||    
T  28084001 -aaaacaaccaaatatgtcagaatcaattctacactaccagagtcaattttggctcctctagaagtggaatcaaa 28084074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 30557582 - 30557505
Alignment:
Q  1 aagtgagttgaattgtaaatttgtgtatgaaaatcaattatagaatgaaaaactacaaatcc--gcttcaagtagaatca 78  Q
    |||||||||||| | |||||||||||  ||||||||||| |||||| |||||||||||||||  ||||||| ||||||||    
T  30557582 aagtgagttgaactataaatttgtgt--gaaaatcaattctagaatcaaaaactacaaatcctagcttcaactagaatca 30557505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 116 - 185
Target Start/End: Original strand, 45660862 - 45660930
Alignment:
Q  116 aaagcaaccaaacatgtcagaatcaattatacacatccataatcaattttggttcctctagaagtggaac 185  Q
    |||||||||||||||||||||||||||| | ||| |||| ||||||||||||  |||| |||||||||||    
T  45660862 aaagcaaccaaacatgtcagaatcaattcttcacctcca-aatcaattttggcccctccagaagtggaac 45660930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 107
Target Start/End: Original strand, 47321912 - 47322019
Alignment:
Q  1 aagtgagttgaattgtaaatttgtgtatgaaaatcaattatagaatgaaaaactacaaatcc--gcttcaagtagaatcaattccggaggcagaatcaat 98  Q
    |||||| ||||| | |||||||||||||||||||||||| ||||||  |||||| ||||| |  |||||||||| ||||||||   || |||||||||||    
T  47321912 aagtgaattgaactataaatttgtgtatgaaaatcaattctagaat-taaaactgcaaattctagcttcaagtataatcaattatagaagcagaatcaat 47322010  T
Q  99 tatactcga 107  Q
    | |||||||    
T  47322011 tctactcga 47322019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 11049330 - 11049247
Alignment:
Q  1 aagtgagttgaattgtaaatttgtgtatgaaaatcaattatagaatgaaaaactacaaatcc--gcttcaagtagaatcaattc 82  Q
    |||||| ||||| | ||||||||||| | |||||||||| |||||| |||| ||||||||||  ||||||||||||||| ||||    
T  11049330 aagtgacttgaactataaatttgtgtgtaaaaatcaattttagaatcaaaagctacaaatcctagcttcaagtagaatcgattc 11049247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 16 - 96
Target Start/End: Complemental strand, 1514408 - 1514326
Alignment:
Q  16 taaatttgtgtatgaaaatcaattatagaatgaaaaactacaaatcc--gcttcaagtagaatcaattccggaggcagaatca 96  Q
    ||||||||||| | ||||||||||||| ||| |||| ||||||||||  |||||||||||||| ||||  |||| ||||||||    
T  1514408 taaatttgtgtgtaaaaatcaattatataataaaaagctacaaatcctagcttcaagtagaataaattttggagacagaatca 1514326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 116 - 167
Target Start/End: Original strand, 47892501 - 47892552
Alignment:
Q  116 aaagcaaccaaacatgtcagaatcaattatacacatccataatcaattttgg 167  Q
    |||||||||||||||| | ||||||||| ||||| |||||||||||||||||    
T  47892501 aaagcaaccaaacatgacggaatcaattctacacttccataatcaattttgg 47892552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 16 - 62
Target Start/End: Original strand, 34721860 - 34721906
Alignment:
Q  16 taaatttgtgtatgaaaatcaattatagaatgaaaaactacaaatcc 62  Q
    ||||||||||| ||||||||||||||||||| |||||| ||||||||    
T  34721860 taaatttgtgtgtgaaaatcaattatagaataaaaaacaacaaatcc 34721906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 107
Target Start/End: Original strand, 30850404 - 30850511
Alignment:
Q  1 aagtgagttgaattgtaaatttgtgtatgaaaatcaattatagaatgaaaaactacaaatcc--gcttcaagtagaatcaattccggaggcagaatcaat 98  Q
    |||||||||||| | ||||||||| | | |||||||||| || ||| |||||||||||||||  | ||||||||||||| | ||| ||| || || ||||    
T  30850404 aagtgagttgaactataaatttgtatgttaaaatcaattctaaaattaaaaactacaaatcctagtttcaagtagaatc-agtccagagacaaaaccaat 30850502  T
Q  99 tatactcga 107  Q
    |||||||||    
T  30850503 tatactcga 30850511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 7790647 - 7790730
Alignment:
Q  1 aagtgagttgaattgtaaatttgtgtatgaaaatcaattatagaatgaaaaactacaaatc--cgcttcaagtagaatcaattc 82  Q
    ||||||||||||   ||||||||||| | |||||||||||||||||  ||| |||||||||    |||||||||||||||||||    
T  7790647 aagtgagttgaacaataaatttgtgtgtaaaaatcaattatagaatctaaatctacaaatcataacttcaagtagaatcaattc 7790730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 121 - 189
Target Start/End: Complemental strand, 30557483 - 30557415
Alignment:
Q  121 aaccaaacatgtcagaatcaattatacacatccataatcaattttggttcctctagaagtggaaccaaa 189  Q
    ||||||||||||||||||||||| ||||| |||| |||||||| | || | | ||||||||| ||||||    
T  30557483 aaccaaacatgtcagaatcaattctacacctccagaatcaattctagtccttgtagaagtgggaccaaa 30557415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 120 - 180
Target Start/End: Original strand, 36780234 - 36780294
Alignment:
Q  120 caaccaaacatgtcagaatcaattatacacatccataatcaattttggttcctctagaagt 180  Q
    ||||||||||| ||| |||||||| ||||| ||||||||||||| |||| |||||| ||||    
T  36780234 caaccaaacatatcaaaatcaattctacacctccataatcaattatggtccctctaaaagt 36780294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 222 - 273
Target Start/End: Original strand, 5407803 - 5407854
Alignment:
Q  222 attctaacttgaaactaggatttgtagcttttgactccaaacgtgattttca 273  Q
    ||||||||||||| ||||||||||||||||  ||||| |||| |||||||||    
T  5407803 attctaacttgaagctaggatttgtagcttcggactcaaaacatgattttca 5407854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 118 - 189
Target Start/End: Original strand, 15478116 - 15478187
Alignment:
Q  118 agcaaccaaacatgtcagaatcaattatacacatccataatcaattttggttcctctagaagtggaaccaaa 189  Q
    ||||||||||||||||| |||||||| |||||  | | |||||| ||||| ||||| | |||||||||||||    
T  15478116 agcaaccaaacatgtcaaaatcaattctacaccgctaaaatcaagtttggctcctccaaaagtggaaccaaa 15478187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 214 - 296
Target Start/End: Complemental strand, 32088664 - 32088584
Alignment:
Q  214 caaatttgattctaacttgaaactaggatttgtagcttttgactccaaacgtgattttcatactaaaattcattgttcaactc 296  Q
    |||| |||||||||||||||| |||||||||  ||||||||| |  ||| |||||||| | ||| ||||| ||||||||||||    
T  32088664 caaaattgattctaacttgaagctaggatttcgagcttttgatt--aaaagtgatttttacactgaaatttattgttcaactc 32088584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 237 - 296
Target Start/End: Original strand, 48832907 - 48832966
Alignment:
Q  237 taggatttgtagcttttgactccaaacgtgattttcatactaaaattcattgttcaactc 296  Q
    |||||||||||||||||||||||||| |||||||| | ||| ||||| ||| || |||||    
T  48832907 taggatttgtagcttttgactccaaatgtgatttttacactcaaatttattattgaactc 48832966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 6021884 - 6021779
Alignment:
Q  1 aagtgagttgaattgtaaatttgtgtatgaaaatcaattatagaatgaaaaactacaaatcc--gcttcaagtagaatcaattccggaggcagaatcaat 98  Q
    ||||||||||||   |||| ||| || | |||||| |||||||||| |||| ||||| ||||  ||||||||||||||| ||||  |||||| |||||||    
T  6021884 aagtgagttgaaccataaacttgagtgtaaaaatctattatagaatcaaaagctacatatcctagcttcaagtagaatcgattctagaggcaaaatcaat 6021785  T
Q  99 tatact 104  Q
    | ||||    
T  6021784 tctact 6021779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 221 - 263
Target Start/End: Original strand, 10324766 - 10324808
Alignment:
Q  221 gattctaacttgaaactaggatttgtagcttttgactccaaac 263  Q
    |||||||||||||| ||||| |||| |||||||||||||||||    
T  10324766 gattctaacttgaagctaggctttgcagcttttgactccaaac 10324808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 214 - 296
Target Start/End: Complemental strand, 39289354 - 39289272
Alignment:
Q  214 caaatttgattctaacttgaaactaggatttgtagcttttgactccaaacgtgattttcatactaaaattcattgttcaactc 296  Q
    |||| |||||||||||||||| |||| | || |||||||||| || |||||||||||| | ||| ||| | || |||||||||    
T  39289354 caaaattgattctaacttgaagctagaacttttagcttttgagtcaaaacgtgatttttacactgaaacttatcgttcaactc 39289272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 7524193 - 7524132
Alignment:
Q  1 aagtgagttgaattgtaaatttgtgtatgaaaatcaattatagaatgaaaaactacaaatcc 62  Q
    |||||||||||| | ||||||||||| | |||||||||| || ||| |||| ||||||||||    
T  7524193 aagtgagttgaactataaatttgtgtgtaaaaatcaattctataatcaaaagctacaaatcc 7524132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 121 - 174
Target Start/End: Original strand, 30234608 - 30234661
Alignment:
Q  121 aaccaaacatgtcagaatcaattatacacatccataatcaattttggttcctct 174  Q
    ||||| |||||||| |||||||||||||| |  | |||||||||||||||||||    
T  30234608 aaccatacatgtcataatcaattatacacttatagaatcaattttggttcctct 30234661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 219 - 296
Target Start/End: Original strand, 35592496 - 35592572
Alignment:
Q  219 ttgattctaacttgaaactaggatttgtagcttttgactccaaacgtgattttcatactaaaattcattgttcaactc 296  Q
    ||||||||||||| || ||||||||| ||||||||||||| |||| | ||||| | ||| ||||| ||| ||||||||    
T  35592496 ttgattctaacttaaagctaggatttttagcttttgactctaaacat-atttttacacttaaatttattcttcaactc 35592572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 82
Target Start/End: Complemental strand, 50571345 - 50571281
Alignment:
Q  20 tttgtgtatgaaaatcaattatagaatgaaaaactacaaatcc--gcttcaagtagaatcaattc 82  Q
    ||||||| |||| |||| || |||||| |||||||||||||||   |||||||||||||||||||    
T  50571345 tttgtgtctgaacatcagttctagaataaaaaactacaaatcctaacttcaagtagaatcaattc 50571281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 121 - 189
Target Start/End: Complemental strand, 8381951 - 8381883
Alignment:
Q  121 aaccaaacatgtcagaatcaattatacacatccataatcaattttggttcctctagaagtggaaccaaa 189  Q
    |||||||||||||| |||||||| || || || | |||||||||||  ||||| |||||| ||||||||    
T  8381951 aaccaaacatgtcaaaatcaattttatacctctagaatcaattttgactcctccagaagtcgaaccaaa 8381883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 2 - 42
Target Start/End: Original strand, 14334069 - 14334109
Alignment:
Q  2 agtgagttgaattgtaaatttgtgtatgaaaatcaattata 42  Q
    |||||||| || | |||||||||||||||||||||||||||    
T  14334069 agtgagtttaactataaatttgtgtatgaaaatcaattata 14334109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 16 - 81
Target Start/End: Original strand, 34387713 - 34387780
Alignment:
Q  16 taaatttgtgtatgaaaatcaattatagaatgaaaaactacaaatcc--gcttcaagtagaatcaatt 81  Q
    ||||||||||| ||||||||||||||||||| |||| || ||| |||   ||||||||| ||||||||    
T  34387713 taaatttgtgtgtgaaaatcaattatagaatcaaaagctgcaattcccaacttcaagtaaaatcaatt 34387780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 121 - 189
Target Start/End: Complemental strand, 35681897 - 35681829
Alignment:
Q  121 aaccaaacatgtcagaatcaattatacacatccataatcaattttggttcctctagaagtggaaccaaa 189  Q
    ||||||||||||||||||||||  |||||||| | |||||| ||||   |||||| ||||| |||||||    
T  35681897 aaccaaacatgtcagaatcaatgttacacatctaaaatcaactttgacccctctaaaagtgaaaccaaa 35681829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 51; Significance: 3e-20; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 16 - 99
Target Start/End: Original strand, 25359594 - 25359679
Alignment:
Q  16 taaatttgtgtatgaaaatcaattatagaatgaaaaactacaaatcc--gcttcaagtagaatcaattccggaggcagaatcaatt 99  Q
    ||||| ||||| ||||||||||||||||||| ||||||||||||| |   ||||||||||||||||||| ||||||||||||||||    
T  25359594 taaatatgtgtgtgaaaatcaattatagaataaaaaactacaaattctaacttcaagtagaatcaattctggaggcagaatcaatt 25359679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 52364131 - 52364048
Alignment:
Q  1 aagtgagttgaattgtaaatttgtgtatgaaaatcaattatagaatgaaaaactacaaatc--cgcttcaagtagaatcaattc 82  Q
    |||||||||||| ||||||||| ||| ||||||||||||||||||| |||| ||| |||||   ||||||||||||| ||||||    
T  52364131 aagtgagttgaactgtaaatttatgtttgaaaatcaattatagaatcaaaagctataaatcatagcttcaagtagaaacaattc 52364048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 118 - 189
Target Start/End: Complemental strand, 1290751 - 1290680
Alignment:
Q  118 agcaaccaaacatgtcagaatcaattatacacatccataatcaattttggttcctctagaagtggaaccaaa 189  Q
    ||||||||||||  ||| |||||||| ||||| || | |||||||||| |||||||||||||||||||||||    
T  1290751 agcaaccaaacaaatcaaaatcaattctacacctctagaatcaattttagttcctctagaagtggaaccaaa 1290680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 136 - 189
Target Start/End: Complemental strand, 52364017 - 52363964
Alignment:
Q  136 aatcaattatacacatccataatcaattttggttcctctagaagtggaaccaaa 189  Q
    |||||||||||||| || ||||||||||||||| |||||| |||||||||||||    
T  52364017 aatcaattatacacctctataatcaattttggtccctctaaaagtggaaccaaa 52363964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 219 - 271
Target Start/End: Complemental strand, 21513432 - 21513380
Alignment:
Q  219 ttgattctaacttgaaactaggatttgtagcttttgactccaaacgtgatttt 271  Q
    |||||| ||||||  | ||||||||||||||||||||||||||||||||||||    
T  21513432 ttgattttaacttagagctaggatttgtagcttttgactccaaacgtgatttt 21513380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 118 - 186
Target Start/End: Original strand, 52925726 - 52925794
Alignment:
Q  118 agcaaccaaacatgtcagaatcaattatacacatccataatcaattttggttcctctagaagtggaacc 186  Q
    ||||||||||||||||| |||||||||||||| || | |||||||||||  ||||| | ||||||||||    
T  52925726 agcaaccaaacatgtcaaaatcaattatacacctctagaatcaattttgactcctccaaaagtggaacc 52925794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 219 - 269
Target Start/End: Original strand, 23290292 - 23290342
Alignment:
Q  219 ttgattctaacttgaaactaggatttgtagcttttgactccaaacgtgatt 269  Q
    |||||||||||||||||||| ||||||||||||||| | |||||| |||||    
T  23290292 ttgattctaacttgaaactatgatttgtagcttttgcccccaaacatgatt 23290342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 219 - 269
Target Start/End: Complemental strand, 49634125 - 49634075
Alignment:
Q  219 ttgattctaacttgaaactaggatttgtagcttttgactccaaacgtgatt 269  Q
    |||||||||||||||| ||||||||||||||||||| ||| ||| ||||||    
T  49634125 ttgattctaacttgaagctaggatttgtagcttttgcctctaaatgtgatt 49634075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 121 - 190
Target Start/End: Complemental strand, 3776506 - 3776437
Alignment:
Q  121 aaccaaacatgtcagaatcaattatacacatccataatcaattttggttcctctagaagtggaaccaaat 190  Q
    |||||||||||||| |||||||| ||||| || |||| ||||||||  ||||| | ||||||||||||||    
T  3776506 aaccaaacatgtcaaaatcaattctacacctctataaccaattttgtctcctccaaaagtggaaccaaat 3776437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 124 - 189
Target Start/End: Original strand, 3845233 - 3845298
Alignment:
Q  124 caaacatgtcagaatcaattatacacatccataatcaattttggttcctctagaagtggaaccaaa 189  Q
    ||||||||||| |||||||| ||||| || | |||||||||||||| ||| | |||||||||||||    
T  3845233 caaacatgtcaaaatcaattctacacctctagaatcaattttggttactccaaaagtggaaccaaa 3845298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 221 - 294
Target Start/End: Complemental strand, 7298400 - 7298328
Alignment:
Q  221 gattctaacttgaaactaggatttgtagcttttgactccaaacgtgattttcatactaaaattcattgttcaac 294  Q
    |||||||||||||| ||||||||||||| |||||| || || ||||||||| | ||| ||||| ||||||||||    
T  7298400 gattctaacttgaagctaggatttgtagtttttgagtctaatcgtgattttta-actgaaatttattgttcaac 7298328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 120 - 189
Target Start/End: Original strand, 52141362 - 52141431
Alignment:
Q  120 caaccaaacatgtcagaatcaattatacacatccataatcaattttggttcctctagaagtggaaccaaa 189  Q
    |||| |||||| |||||||| ||| ||||| || | |||||||| |||| ||||||||||||||||||||    
T  52141362 caactaaacatatcagaatctattctacacctcaaaaatcaattatggtccctctagaagtggaaccaaa 52141431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 31708244 - 31708303
Alignment:
Q  1 aagtgagttgaattgtaaatttgtgtatgaaaatcaattatagaatgaaaaactacaaat 60  Q
    |||||||||||||| ||||||||||| | | |||||||| |||||| |||| ||||||||    
T  31708244 aagtgagttgaattataaatttgtgtgttagaatcaattctagaatcaaaagctacaaat 31708303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 63 - 105
Target Start/End: Original strand, 7717390 - 7717432
Alignment:
Q  63 gcttcaagtagaatcaattccggaggcagaatcaattatactc 105  Q
    |||||||||||||||||||| ||||||| |||||||| |||||    
T  7717390 gcttcaagtagaatcaattctggaggcaaaatcaattctactc 7717432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 122 - 164
Target Start/End: Original strand, 38332656 - 38332698
Alignment:
Q  122 accaaacatgtcagaatcaattatacacatccataatcaattt 164  Q
    ||||||||||||| ||||||||||||||||| | |||||||||    
T  38332656 accaaacatgtcaaaatcaattatacacatctagaatcaattt 38332698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 118 - 167
Target Start/End: Complemental strand, 7262868 - 7262819
Alignment:
Q  118 agcaaccaaacatgtcagaatcaattatacacatccataatcaattttgg 167  Q
    |||||||||||||||||||||||||| | ||| || | ||||||||||||    
T  7262868 agcaaccaaacatgtcagaatcaattcttcacctctaaaatcaattttgg 7262819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 32523345 - 32523406
Alignment:
Q  1 aagtgagttgaattgtaaatttgtgtatgaaaatcaattatagaatgaaaaactacaaatcc 62  Q
    ||||||||| || | ||||||||||| | |||||||||| |||||| |||| ||||||||||    
T  32523345 aagtgagttaaactctaaatttgtgtgtaaaaatcaattttagaatcaaaagctacaaatcc 32523406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 24 - 81
Target Start/End: Complemental strand, 35058124 - 35058065
Alignment:
Q  24 tgtatgaaaatcaattatagaatgaaaaactacaaatcc--gcttcaagtagaatcaatt 81  Q
    |||||||||||||||| || ||| |||| ||||||||||  |||||| ||||||||||||    
T  35058124 tgtatgaaaatcaattctataattaaaagctacaaatcctagcttcatgtagaatcaatt 35058065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 50; Significance: 1e-19; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 107
Target Start/End: Original strand, 41386820 - 41386928
Alignment:
Q  1 aagtgagttgaattgtaaatttgtgtatgaaaatcaattatagaatgaaaaactacaaatcc--gcttcaagtagaatcaattccggaggcagaatcaat 98  Q
    |||||||||||||| ||||||||||| | || ||||||| |||||| |||| ||||||||||  |||||||||||||||||||| | |||   |||||||    
T  41386820 aagtgagttgaattataaatttgtgtgtaaatatcaattctagaattaaaagctacaaatcctagcttcaagtagaatcaattctgaaggtgaaatcaat 41386919  T
Q  99 tatactcga 107  Q
    |||||||||    
T  41386920 tatactcga 41386928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 219 - 296
Target Start/End: Original strand, 18349774 - 18349851
Alignment:
Q  219 ttgattctaacttgaaactaggatttgtagcttttgactccaaacgtgattttcatactaaaattcattgttcaactc 296  Q
    |||||| ||| |||||  |||| |||||||||||||||| ||||||||||||| | ||| ||||| ||||||||||||    
T  18349774 ttgattttaatttgaagttagggtttgtagcttttgacttcaaacgtgatttttacactcaaatttattgttcaactc 18349851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 219 - 263
Target Start/End: Complemental strand, 36271373 - 36271329
Alignment:
Q  219 ttgattctaacttgaaactaggatttgtagcttttgactccaaac 263  Q
    |||||||||| ||||||||||||||| |||||||||||| |||||    
T  36271373 ttgattctaatttgaaactaggatttctagcttttgactacaaac 36271329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 189
Target Start/End: Complemental strand, 40491658 - 40491477
Alignment:
Q  1 aagtgagttgaattgtaaatttgtgtatgaaaatcaattatagaatgaaaaactacaaatccg--cttcaagtagaatcaattccggaggcagaatcaat 98  Q
    ||||||||| || | ||||||||||| | ||| |||||| |||||| |||| ||||||| |    ||||||||||| ||||||| | ||||| |||||||    
T  40491658 aagtgagttaaactttaaatttgtgtgtaaaagtcaattctagaatcaaaagctacaaaacttaacttcaagtagagtcaattctgaaggcaaaatcaat 40491559  T
Q  99 tatactcgatggcaaccaaagcaaccaaacatgtcagaatcaattatacacatccataatcaattttggttcctctagaagtggaaccaaa 189  Q
    |||  ||||         |||||||||| ||||| |||||||||| ||||   ||||| |||||| ||   ||||||||||||||||||||    
T  40491558 tatcttcga---------aagcaaccaaccatgttagaatcaattctacaaccccatattcaattatgacacctctagaagtggaaccaaa 40491477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 124 - 163
Target Start/End: Complemental strand, 45997470 - 45997431
Alignment:
Q  124 caaacatgtcagaatcaattatacacatccataatcaatt 163  Q
    ||||||||| |||||||||||| |||||||||||||||||    
T  45997470 caaacatgtaagaatcaattatgcacatccataatcaatt 45997431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 2 - 60
Target Start/End: Complemental strand, 1411041 - 1410983
Alignment:
Q  2 agtgagttgaattgtaaatttgtgtatgaaaatcaattatagaatgaaaaactacaaat 60  Q
    |||||||||||||||||||||| || |||||||||||| || ||  |||| ||||||||    
T  1411041 agtgagttgaattgtaaatttgcgtgtgaaaatcaattctaaaaacaaaatctacaaat 1410983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 42816473 - 42816523
Alignment:
Q  1 aagtgagttgaattgtaaatttgtgtatgaaaatcaattatagaatgaaaa 51  Q
    |||||| ||||||| ||||||||||| |||||||||||| |||||| ||||    
T  42816473 aagtgaattgaattataaatttgtgtgtgaaaatcaattctagaattaaaa 42816523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 127 - 189
Target Start/End: Complemental strand, 46325636 - 46325574
Alignment:
Q  127 acatgtcagaatcaattatacacatccataatcaattttggttcctctagaagtggaaccaaa 189  Q
    |||| ||| |||||||| |||||||||| ||| || ||||||| ||||||||||| |||||||    
T  46325636 acatatcaaaatcaattctacacatccaaaattaaatttggtttctctagaagtgaaaccaaa 46325574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 118 - 163
Target Start/End: Complemental strand, 41841133 - 41841088
Alignment:
Q  118 agcaaccaaacatgtcagaatcaattatacacatccataatcaatt 163  Q
    ||||||||||||||||| | |||||| ||||| |||||||||||||    
T  41841133 agcaaccaaacatgtcaaagtcaattttacacctccataatcaatt 41841088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 219 - 296
Target Start/End: Complemental strand, 42675136 - 42675059
Alignment:
Q  219 ttgattctaacttgaaactaggatttgtagcttttgactccaaacgtgattttcatactaaaattcattgttcaactc 296  Q
    |||||||||||||| |||||||||| |||| |||||| ||||||| | ||||| | | || |||| || |||||||||    
T  42675136 ttgattctaacttggaactaggattggtagattttgattccaaacataatttttacattagaatttatcgttcaactc 42675059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 121 - 190
Target Start/End: Complemental strand, 45004952 - 45004883
Alignment:
Q  121 aaccaaacatgtcagaatcaattatacacatccataatcaattttggttcctctagaagtggaaccaaat 190  Q
    |||||||||||||| |||||||| ||||| || | ||||||||||||  | | |||||||| ||||||||    
T  45004952 aaccaaacatgtcaaaatcaattctacacctctagaatcaattttggcccttttagaagtgaaaccaaat 45004883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 121 - 189
Target Start/End: Original strand, 38123766 - 38123834
Alignment:
Q  121 aaccaaacatgtcagaatcaattatacacatccataatcaattttggttcctctagaagtggaaccaaa 189  Q
    |||||||||||| | |||||||| ||||  || | |||||||||||| ||||| | |||||||||||||    
T  38123766 aaccaaacatgttaaaatcaattctacatctctagaatcaattttggctcctccaaaagtggaaccaaa 38123834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 118 - 166
Target Start/End: Complemental strand, 48158861 - 48158813
Alignment:
Q  118 agcaaccaaacatgtcagaatcaattatacacatccataatcaattttg 166  Q
    ||||||||||||||||| |||||||| ||| | | ||||||||||||||    
T  48158861 agcaaccaaacatgtcaaaatcaattttacgccttcataatcaattttg 48158813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 46; Significance: 3e-17; HSPs: 26)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 19 - 117
Target Start/End: Original strand, 2002718 - 2002818
Alignment:
Q  19 atttgtgtatgaaaatcaattatagaatgaaaaactacaaatcc--gcttcaagtagaatcaattccggaggcagaatcaattatactcgatggcaacca 116  Q
    |||||||| | |||||||||| ||||||||||||||||||||||  ||||||||||||||||  || ||||||| |||||||| |||| ||  |||||||    
T  2002718 atttgtgtgtaaaaatcaattttagaatgaaaaactacaaatcctagcttcaagtagaatcaggtctggaggcaaaatcaattctactagaaagcaacca 2002817  T
Q  117 a 117  Q
    |    
T  2002818 a 2002818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 107
Target Start/End: Complemental strand, 10644683 - 10644575
Alignment:
Q  1 aagtgagttgaattgtaaatttgtgtatgaaaatcaattatagaatgaaaaactacaaatc--cgcttcaagtagaatcaattccggaggcagaatcaat 98  Q
    |||||||||||| | ||||||| ||||||||| | |||| || ||||||||||||||||||    ||||||||||||| ||||  |||||||||||||||    
T  10644683 aagtgagttgaactataaatttatgtatgaaagttaattctataatgaaaaactacaaatcttaacttcaagtagaataaattttggaggcagaatcaat 10644584  T
Q  99 tatactcga 107  Q
    | |||||||    
T  10644583 tctactcga 10644575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 1 - 107
Target Start/End: Original strand, 33019161 - 33019269
Alignment:
Q  1 aagtgagttgaattgtaaatttgtgtatgaaaatcaattatagaatgaaaaactacaaatcc--gcttcaagtagaatcaattccggaggcagaatcaat 98  Q
    |||||||||||| | ||||||| ||| |||||||||||| || ||  |||| |||||||| |  ||||||| || |||||||||  ||||||||||||||    
T  33019161 aagtgagttgaactataaatttatgtgtgaaaatcaattctaaaaccaaaagctacaaattctagcttcaaatataatcaattctagaggcagaatcaat 33019260  T
Q  99 tatactcga 107  Q
    |||||||||    
T  33019261 tatactcga 33019269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 219 - 295
Target Start/End: Original strand, 37561706 - 37561782
Alignment:
Q  219 ttgattctaacttgaaactaggatttgtagcttttgactccaaacgtgattttcatactaaaattcattgttcaact 295  Q
    |||||||||||||||||||| |||||||| ||||||||| |||| |||||||| | ||| ||||  |||||||||||    
T  37561706 ttgattctaacttgaaactacgatttgtaccttttgacttcaaatgtgatttttacactcaaatctattgttcaact 37561782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 118 - 189
Target Start/End: Original strand, 33047667 - 33047738
Alignment:
Q  118 agcaaccaaacatgtcagaatcaattatacacatccataatcaattttggttcctctagaagtggaaccaaa 189  Q
    ||||| ||||||||| |||||||||| ||||| |||| ||||||||||||| |||||||||| | |||||||    
T  33047667 agcaatcaaacatgtgagaatcaattctacacctccaaaatcaattttggtccctctagaagcgaaaccaaa 33047738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 219 - 271
Target Start/End: Original strand, 44810374 - 44810426
Alignment:
Q  219 ttgattctaacttgaaactaggatttgtagcttttgactccaaacgtgatttt 271  Q
    |||||||||||||||| |||||||||||||||||||||  ||||| |||||||    
T  44810374 ttgattctaacttgaagctaggatttgtagcttttgacggcaaacatgatttt 44810426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 226 - 296
Target Start/End: Original strand, 32827519 - 32827590
Alignment:
Q  226 taacttgaaactaggatttgta-gcttttgactccaaacgtgattttcatactaaaattcattgttcaactc 296  Q
    ||||||||| ||||||||| || |||||||| ||||||||||||||||||| | ||||  ||||||||||||    
T  32827519 taacttgaagctaggatttttaagcttttgattccaaacgtgattttcataatcaaatatattgttcaactc 32827590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 219 - 269
Target Start/End: Complemental strand, 3654980 - 3654930
Alignment:
Q  219 ttgattctaacttgaaactaggatttgtagcttttgactccaaacgtgatt 269  Q
    ||||||||||||| || |||||||||||| ||||||||||||||| |||||    
T  3654980 ttgattctaacttcaagctaggatttgtaccttttgactccaaacatgatt 3654930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 8800703 - 8800763
Alignment:
Q  1 aagtgagttgaattgtaaatttgtgtatgaaaatcaattatagaatgaaaaactacaaatc 61  Q
    |||||||||||||| ||||||||| ||| ||||||||||||||| | ||||  ||||||||    
T  8800703 aagtgagttgaattataaatttgtatattaaaatcaattatagattcaaaagttacaaatc 8800763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 118 - 189
Target Start/End: Complemental strand, 9943393 - 9943322
Alignment:
Q  118 agcaaccaaacatgtcagaatcaattatacacatccataatcaattttggttcctctagaagtggaaccaaa 189  Q
    ||||||||||||||| | |||||||| ||||| | || |||||||||||||| ||| | | |||||||||||    
T  9943393 agcaaccaaacatgttaaaatcaattttacaccttcagaatcaattttggttgctccaaatgtggaaccaaa 9943322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 219 - 270
Target Start/End: Original strand, 29823508 - 29823559
Alignment:
Q  219 ttgattctaacttgaaactaggatttgtagcttttgactccaaacgtgattt 270  Q
    ||||||| |||||||| ||| ||||||||||||||||| ||||| |||||||    
T  29823508 ttgattcaaacttgaatctaagatttgtagcttttgaccccaaatgtgattt 29823559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 42741057 - 42740975
Alignment:
Q  1 aagtgagttgaattgtaaatttgtgtatgaaaatcaattatagaatgaaaaactacaaatcc--gcttcaagtagaatcaatt 81  Q
    |||||||||| |  ||||||||| || | |||||||||| |||||| |||| |||||||||   |||||||||||||||||||    
T  42741057 aagtgagttggacagtaaatttgagtgtaaaaatcaattctagaatcaaaagctacaaatcttagcttcaagtagaatcaatt 42740975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 120 - 166
Target Start/End: Original strand, 8481391 - 8481437
Alignment:
Q  120 caaccaaacatgtcagaatcaattatacacatccataatcaattttg 166  Q
    |||| |||||||||| |||| |||||||||||||| |||||||||||    
T  8481391 caacaaaacatgtcaaaatccattatacacatccagaatcaattttg 8481437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 126 - 188
Target Start/End: Complemental strand, 30503171 - 30503109
Alignment:
Q  126 aacatgtcagaatcaattatacacatccataatcaattttggttcctctagaagtggaaccaa 188  Q
    ||||||| |||||||||| ||||| |||| |||||||||||   ||| |||||||||||||||    
T  30503171 aacatgttagaatcaattctacacttccaaaatcaattttgacccctttagaagtggaaccaa 30503109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 120 - 190
Target Start/End: Complemental strand, 32595964 - 32595894
Alignment:
Q  120 caaccaaacatgtcagaatcaattatacacatccataatcaattttggttcctctagaagtggaaccaaat 190  Q
    ||||||||||||||||||   ||| |||||  |||||||||||| |||| ||||||||| || ||||||||    
T  32595964 caaccaaacatgtcagaaatgattttacaccaccataatcaattatggtccctctagaattgaaaccaaat 32595894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 219 - 269
Target Start/End: Complemental strand, 37402319 - 37402269
Alignment:
Q  219 ttgattctaacttgaaactaggatttgtagcttttgactccaaacgtgatt 269  Q
    |||| ||||||||||| |||| ||||||||||||||||| ||||| |||||    
T  37402319 ttgactctaacttgaagctagaatttgtagcttttgacttcaaacatgatt 37402269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 124 - 189
Target Start/End: Original strand, 11759941 - 11760006
Alignment:
Q  124 caaacatgtcagaatcaattatacacatccataatcaattttggttcctctagaagtggaaccaaa 189  Q
    |||||||||||||||||||| ||||| |||  ||||||||||| |  |||||||| ||||| ||||    
T  11759941 caaacatgtcagaatcaattctacacttccggaatcaattttgatctctctagaaatggaatcaaa 11760006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 226 - 271
Target Start/End: Original strand, 28028848 - 28028893
Alignment:
Q  226 taacttgaaactaggatttgtagcttttgactccaaacgtgatttt 271  Q
    ||||||||| |||| ||||||||||||||||| |||| ||||||||    
T  28028848 taacttgaagctagaatttgtagcttttgactacaaatgtgatttt 28028893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 219 - 296
Target Start/End: Original strand, 44439253 - 44439330
Alignment:
Q  219 ttgattctaacttgaaactaggatttgtagcttttgactccaaacgtgattttcatactaaaattcattgttcaactc 296  Q
    |||||||||||||||| |||  ||||| ||||||||| || |||  ||||||| | ||| ||||| ||||||||||||    
T  44439253 ttgattctaacttgaagctaaaatttggagcttttgattctaaaattgattttaacactcaaatttattgttcaactc 44439330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 16 - 81
Target Start/End: Complemental strand, 3352141 - 3352074
Alignment:
Q  16 taaatttgtgtatgaaaatcaattatagaatgaaaaactacaaatcc--gcttcaagtagaatcaatt 81  Q
    ||||||||||| ||||||||||||||||||| |||| || ||| |||   ||||||||| ||||||||    
T  3352141 taaatttgtgtgtgaaaatcaattatagaatcaaaagctgcaattcccaacttcaagtaaaatcaatt 3352074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 121 - 189
Target Start/End: Complemental strand, 7629829 - 7629761
Alignment:
Q  121 aaccaaacatgtcagaatcaattatacacatccataatcaattttggttcctctagaagtggaaccaaa 189  Q
    ||||||||||| || |||||||| ||||| || | ||||||| |||| ||||| | |||||||||||||    
T  7629829 aaccaaacatgacaaaatcaattctacacctctagaatcaatcttggctcctccaaaagtggaaccaaa 7629761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 16 - 60
Target Start/End: Complemental strand, 12037126 - 12037082
Alignment:
Q  16 taaatttgtgtatgaaaatcaattatagaatgaaaaactacaaat 60  Q
    ||||||||| |||||||||||||| |||||| |||| ||||||||    
T  12037126 taaatttgtttatgaaaatcaattgtagaatcaaaagctacaaat 12037082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 120 - 164
Target Start/End: Original strand, 15928551 - 15928595
Alignment:
Q  120 caaccaaacatgtcagaatcaattatacacatccataatcaattt 164  Q
    ||||||||||||||| |||||||| ||||| |||| |||||||||    
T  15928551 caaccaaacatgtcaaaatcaattctacacctccagaatcaattt 15928595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 219 - 255
Target Start/End: Original strand, 43073975 - 43074011
Alignment:
Q  219 ttgattctaacttgaaactaggatttgtagcttttga 255  Q
    |||||| ||||||||||||| ||||||||||||||||    
T  43073975 ttgattttaacttgaaactaagatttgtagcttttga 43074011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 116 - 148
Target Start/End: Complemental strand, 43501115 - 43501083
Alignment:
Q  116 aaagcaaccaaacatgtcagaatcaattataca 148  Q
    |||||||||||||||||||||||||||| ||||    
T  43501115 aaagcaaccaaacatgtcagaatcaattctaca 43501083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 219 - 255
Target Start/End: Original strand, 43501125 - 43501160
Alignment:
Q  219 ttgattctaacttgaaactaggatttgtagcttttga 255  Q
    ||||||||| |||||||||||||||||||||||||||    
T  43501125 ttgattcta-cttgaaactaggatttgtagcttttga 43501160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0314 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0314
Description:

Target: scaffold0314; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 121 - 189
Target Start/End: Complemental strand, 17393 - 17325
Alignment:
Q  121 aaccaaacatgtcagaatcaattatacacatccataatcaattttggttcctctagaagtggaaccaaa 189  Q
    ||||||| |||||| |||||||| ||||| |||| |||||||||||||| |||||||||||||||||||    
T  17393 aaccaaatatgtcataatcaattctacacctccagaatcaattttggttactctagaagtggaaccaaa 17325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 1e-16; HSPs: 28)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 118
Target Start/End: Complemental strand, 38845523 - 38845404
Alignment:
Q  1 aagtgagttgaattgtaaatttgtgtatgaaaatcaattatagaatgaaaaactacaaatc--cgcttcaagtagaatcaattccggaggcagaatcaat 98  Q
    ||||||||| || | || |||||||| |||||||||||| |||||| ||||||||||||||   |||||||||||||||||||  |||  |||||||||     
T  38845523 aagtgagtttaactatatatttgtgtgtgaaaatcaattctagaatcaaaaactacaaatcttagcttcaagtagaatcaattttggacacagaatcaac 38845424  T
Q  99 tatactcgatggcaaccaaa 118  Q
    | |||| |||| ||||||||    
T  38845423 tttacttgatgacaaccaaa 38845404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 42858188 - 42858105
Alignment:
Q  1 aagtgagttgaattgtaaatttgtgtatgaaaatcaattatagaatgaaaaactacaaatcc--gcttcaagtagaatcaattc 82  Q
    |||||||||||| | ||||||||||| ||||||||||||||||||| |||| || |||||||   ||||||||| |||||||||    
T  42858188 aagtgagttgaactataaatttgtgtgtgaaaatcaattatagaattaaaagctccaaatcctaacttcaagtaaaatcaattc 42858105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 4 - 107
Target Start/End: Complemental strand, 5468851 - 5468745
Alignment:
Q  4 tgagttgaattgtaaatttgtgtatgaaaatcaa-ttatagaatgaaaaactacaaatcc--gcttcaagtagaatcaattccggaggcagaatcaatta 100  Q
    ||||||||| | |||||||||||||||||||||| ||||| ||| ||||| || ||||||  |  |||||||||||||| |  |||||||||||||||||    
T  5468851 tgagttgaactataaatttgtgtatgaaaatcaaattataaaattaaaaattataaatcctagtctcaagtagaatcaaatatggaggcagaatcaatta 5468752  T
Q  101 tactcga 107  Q
    || ||||    
T  5468751 taatcga 5468745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 118 - 189
Target Start/End: Complemental strand, 11648052 - 11647981
Alignment:
Q  118 agcaaccaaacatgtcagaatcaattatacacatccataatcaattttggttcctctagaagtggaaccaaa 189  Q
    ||||| ||||||||||| ||||||||||||||  ||| |||||||| |||| |||||||||||||| |||||    
T  11648052 agcaatcaaacatgtcaaaatcaattatacaccaccaaaatcaattatggtccctctagaagtggagccaaa 11647981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 118 - 189
Target Start/End: Original strand, 18851197 - 18851268
Alignment:
Q  118 agcaaccaaacatgtcagaatcaattatacacatccataatcaattttggttcctctagaagtggaaccaaa 189  Q
    |||||||||||| |||||| |||||| ||||  |||||||||||||||||| |||||||||| |||| ||||    
T  18851197 agcaaccaaacacgtcagagtcaattctacaactccataatcaattttggtccctctagaagcggaatcaaa 18851268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 120 - 189
Target Start/End: Original strand, 22226353 - 22226422
Alignment:
Q  120 caaccaaacatgtcagaatcaattatacacatccataatcaattttggttcctctagaagtggaaccaaa 189  Q
    |||||||||||||||||||||||| ||||| |||| |||||||| | |||| |||| |||||||| ||||    
T  22226353 caaccaaacatgtcagaatcaattctacacgtccaaaatcaattatagttcgtctaaaagtggaatcaaa 22226422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 219 - 296
Target Start/End: Complemental strand, 42439703 - 42439626
Alignment:
Q  219 ttgattctaacttgaaactaggatttgtagcttttgactccaaacgtgattttcatactaaaattcattgttcaactc 296  Q
    |||||||||||||||| |||| || |||||||||||| || |||||||||||| | |||||| || || |||||||||    
T  42439703 ttgattctaacttgaagctagaatctgtagcttttgagtctaaacgtgatttttacactaaattttatcgttcaactc 42439626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 6951310 - 6951392
Alignment:
Q  1 aagtgagttgaattgtaaatttgtgtatgaaaatcaattatagaatgaaaaactacaaatcc--gcttcaagtagaatcaatt 81  Q
    |||||| ||||||| ||||||| ||| |  |||||||||||||||| |||| ||||||||||   ||||||||||||||||||    
T  6951310 aagtgaattgaattataaatttatgtgtacaaatcaattatagaatcaaaagctacaaatcctaacttcaagtagaatcaatt 6951392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 96
Target Start/End: Complemental strand, 9818815 - 9818717
Alignment:
Q  1 aagtgagttgaattgtaaatttgtgtatgaaaa-tcaattatagaatgaaaaactacaaatcc--gcttcaagtagaatcaattccggaggcagaatca 96  Q
    |||||||||||| | ||||||||||| | |||| |||||| |||||| |||| |||||||||   |||||||||||||||||||  ||||||| |||||    
T  9818815 aagtgagttgaactataaatttgtgtttaaaaaatcaattctagaatcaaaagctacaaatcatagcttcaagtagaatcaattatggaggcaaaatca 9818717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 221 - 296
Target Start/End: Complemental strand, 12433037 - 12432962
Alignment:
Q  221 gattctaacttgaaactaggatttgtagcttttgactccaaacgtgattttcatactaaaattcattgttcaactc 296  Q
    |||||||||||||| |||||||||||| || ||||||| |||||||||||  | ||  ||||| ||||||||||||    
T  12433037 gattctaacttgaagctaggatttgtatctgttgactcaaaacgtgatttctacacacaaatttattgttcaactc 12432962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 116 - 167
Target Start/End: Complemental strand, 25548490 - 25548439
Alignment:
Q  116 aaagcaaccaaacatgtcagaatcaattatacacatccataatcaattttgg 167  Q
    ||||||| ||||||||||| |||||||| |||||||||| ||||||||||||    
T  25548490 aaagcaatcaaacatgtcataatcaattctacacatccacaatcaattttgg 25548439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 117 - 187
Target Start/End: Original strand, 3043118 - 3043188
Alignment:
Q  117 aagcaaccaaacatgtcagaatcaattatacacatccataatcaattttggttcctctagaagtggaacca 187  Q
    ||||||| |||||||||| |||||||| ||||| || | ||||||||||| |||||| | |||||||||||    
T  3043118 aagcaactaaacatgtcaaaatcaattctacacctctagaatcaattttgattcctccataagtggaacca 3043188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 136 - 189
Target Start/End: Original strand, 38845644 - 38845697
Alignment:
Q  136 aatcaattatacacatccataatcaattttggttcctctagaagtggaaccaaa 189  Q
    |||||||| ||||| |||| |||||||||||||  |||||||||||||||||||    
T  38845644 aatcaattctacacctccagaatcaattttggtctctctagaagtggaaccaaa 38845697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 120 - 189
Target Start/End: Complemental strand, 39097232 - 39097163
Alignment:
Q  120 caaccaaacatgtcagaatcaattatacacatccataatcaattttggttcctctagaagtggaaccaaa 189  Q
    ||||||||||||||| |||||||| ||||| || ||||||||||| |||  ||||| ||||| |||||||    
T  39097232 caaccaaacatgtcaaaatcaattctacacctctataatcaatttcggtctctctaaaagtgaaaccaaa 39097163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 219 - 271
Target Start/End: Complemental strand, 3970486 - 3970434
Alignment:
Q  219 ttgattctaacttgaaactaggatttgtagcttttgactccaaacgtgatttt 271  Q
    ||||||||||  |||| |||||| ||||||||||||||||||||| |||||||    
T  3970486 ttgattctaatctgaagctaggaattgtagcttttgactccaaacttgatttt 3970434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 121 - 165
Target Start/End: Original strand, 12404997 - 12405041
Alignment:
Q  121 aaccaaacatgtcagaatcaattatacacatccataatcaatttt 165  Q
    |||||||||||||| |||||||||||||| | |||||||||||||    
T  12404997 aaccaaacatgtcaaaatcaattatacaccttcataatcaatttt 12405041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 81
Target Start/End: Complemental strand, 14299395 - 14299328
Alignment:
Q  16 taaatttgtgtatgaaaatcaattatagaatgaaaaactacaaatcc--gcttcaagtagaatcaatt 81  Q
    ||||||| ||| |||||| ||||| |||||| |||||||||||||||   ||||||||||||||||||    
T  14299395 taaatttatgtgtgaaaaccaattctagaataaaaaactacaaatcctaacttcaagtagaatcaatt 14299328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 121 - 189
Target Start/End: Complemental strand, 15368210 - 15368142
Alignment:
Q  121 aaccaaacatgtcagaatcaattatacacatccataatcaattttggttcctctagaagtggaaccaaa 189  Q
    ||||| |||||||| |||||||| |||| ||| | |||||||||||| ||||| | |||||||||||||    
T  15368210 aaccatacatgtcaaaatcaattctacatatctagaatcaattttggctcctccaaaagtggaaccaaa 15368142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 16 - 99
Target Start/End: Original strand, 13171780 - 13171866
Alignment:
Q  16 taaatttgtgtatgaaaa-tcaattatagaatgaaaaactacaaatccg--cttcaagtagaatcaattccggaggcagaatcaatt 99  Q
    ||||||| |||||||||| ||| ||||||||| ||||  ||||||||    ||||||||||||||||||  ||||||||||||||||    
T  13171780 taaatttttgtatgaaaaatcatttatagaatcaaaatttacaaatcttttcttcaagtagaatcaattttggaggcagaatcaatt 13171866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 18851087 - 18851169
Alignment:
Q  1 aagtgagttgaattgtaaatttgtgtatgaaaatcaattatagaatgaaaaactacaaatc--cgcttcaagtagaatcaatt 81  Q
    ||||||||| || | ||||| ||||| |||||||||||| || ||| |||| |||||||||   |||||||||||||||||||    
T  18851087 aagtgagtttaactataaatatgtgtgtgaaaatcaattctataatcaaaagctacaaatcatagcttcaagtagaatcaatt 18851169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 219 - 270
Target Start/End: Original strand, 34195211 - 34195262
Alignment:
Q  219 ttgattctaacttgaaactaggatttgtagcttttgactccaaacgtgattt 270  Q
    |||||| |||||| || |||||||||||| ||||| ||||||||||||||||    
T  34195211 ttgattttaactttaagctaggatttgtatcttttaactccaaacgtgattt 34195262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 119 - 166
Target Start/End: Complemental strand, 35108208 - 35108161
Alignment:
Q  119 gcaaccaaacatgtcagaatcaattatacacatccataatcaattttg 166  Q
    |||| |||| ||||||||||||||||||||| |||| |||||||||||    
T  35108208 gcaatcaaatatgtcagaatcaattatacacttccaaaatcaattttg 35108161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 219 - 257
Target Start/End: Original strand, 1102133 - 1102171
Alignment:
Q  219 ttgattctaacttgaaactaggatttgtagcttttgact 257  Q
    |||||| ||||||||| ||||||||||||||||||||||    
T  1102133 ttgattttaacttgaagctaggatttgtagcttttgact 1102171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 219 - 293
Target Start/End: Complemental strand, 42194617 - 42194543
Alignment:
Q  219 ttgattctaacttgaaactaggatttgtagcttttgactccaaacgtgattttcatactaaaattcattgttcaa 293  Q
    ||||||||||| |||| ||||| |||||||||||||| || ||| ||| |||| | ||| ||||| |||||||||    
T  42194617 ttgattctaacctgaagctaggttttgtagcttttgagtctaaatgtggtttttacactgaaatttattgttcaa 42194543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 118 - 163
Target Start/End: Original strand, 7637497 - 7637542
Alignment:
Q  118 agcaaccaaacatgtcagaatcaattatacacatccataatcaatt 163  Q
    ||||| ||||||||||| |||||||| |||||||||| ||||||||    
T  7637497 agcaatcaaacatgtcaaaatcaattttacacatccagaatcaatt 7637542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 219 - 296
Target Start/End: Original strand, 29923241 - 29923318
Alignment:
Q  219 ttgattctaacttgaaactaggatttgtagcttttgactccaaacgtgattttcatactaaaattcattgttcaactc 296  Q
    |||||||||||||||| ||| ||||||| | |||| |||| |||||||||||| | ||| ||||| | |||| |||||    
T  29923241 ttgattctaacttgaagctaagatttgtcgtttttaactcaaaacgtgatttttacactcaaatttaatgtttaactc 29923318  T

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Target: chr5; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 219 - 271
Target Start/End: Original strand, 11599632 - 11599684
Alignment:
Q  219 ttgattctaacttgaaactaggatttgtagcttttgactccaaacgtgatttt 271  Q
    ||||||||||||||||| ||| | ||||| ||||| ||||||||| |||||||    
T  11599632 ttgattctaacttgaaattagaacttgtaacttttaactccaaacatgatttt 11599684  T

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Target: chr5; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 219 - 283
Target Start/End: Original strand, 17862505 - 17862569
Alignment:
Q  219 ttgattctaacttgaaactaggatttgtagcttttgactccaaacgtgattttcatactaaaatt 283  Q
    |||||| ||||||||| |||  || |||||||||||| | ||||||||||||||| ||| |||||    
T  17862505 ttgattttaacttgaagctataatatgtagcttttgaattcaaacgtgattttcacactcaaatt 17862569  T

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Target: chr8 (Bit Score: 44; Significance: 4e-16; HSPs: 23)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 105
Target Start/End: Complemental strand, 37684485 - 37684379
Alignment:
Q  1 aagtgagttgaattgtaaatttgtgtatgaaaatcaattatagaatgaaaaactacaaatcc--gcttcaagtagaatcaattccggaggcagaatcaat 98  Q
    |||||||||||||| ||||||| || || |||||||||| |||||| |||| | ||||||||   ||||||||||||||||||| |||| || |||||||    
T  37684485 aagtgagttgaattataaatttttgcattaaaatcaattttagaatcaaaagccacaaatcctaacttcaagtagaatcaattctggagacaaaatcaat 37684386  T
Q  99 tatactc 105  Q
    | |||||    
T  37684385 tctactc 37684379  T

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Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 4 - 107
Target Start/End: Complemental strand, 38868575 - 38868470
Alignment:
Q  4 tgagttgaattgtaaatttgtgtatgaaaatcaattatagaatgaaaaactacaaatc--cgcttcaagtagaatcaattccggaggcagaatcaattat 101  Q
    ||||||||| | ||||||||||| ||||||||||||||||||  |||| |||||||||   |||||||||||||||||||   ||||||  ||||||| |    
T  38868575 tgagttgaactataaatttgtgtgtgaaaatcaattatagaaccaaaagctacaaatcttagcttcaagtagaatcaattttagaggcatcatcaatttt 38868476  T
Q  102 actcga 107  Q
    ||||||    
T  38868475 actcga 38868470  T

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Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 132 - 189
Target Start/End: Original strand, 44141186 - 44141243
Alignment:
Q  132 tcagaatcaattatacacatccataatcaattttggttcctctagaagtggaaccaaa 189  Q
    |||||||||||| || || |||| ||||||||||||||||||||||||||||||||||    
T  44141186 tcagaatcaattctagacctccagaatcaattttggttcctctagaagtggaaccaaa 44141243  T

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Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 5 - 104
Target Start/End: Original strand, 44141059 - 44141160
Alignment:
Q  5 gagttgaattgtaaatttgtgtatgaaaatcaattatagaatgaaaaactacaaatcc--gcttcaagtagaatcaattccggaggcagaatcaattata 102  Q
    |||||||| | |||| || ||| |||||||||| | |||||| |||||||||||||||   ||||||||||||||||||  ||||||| |||||||| ||    
T  44141059 gagttgaactataaaattatgtgtgaaaatcaactctagaatcaaaaactacaaatcctaacttcaagtagaatcaattttggaggcaaaatcaattcta 44141158  T
Q  103 ct 104  Q
    ||    
T  44141159 ct 44141160  T

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Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 5 - 99
Target Start/End: Original strand, 4662912 - 4663008
Alignment:
Q  5 gagttgaattgtaaatttgtgtatgaaaatcaattatagaatgaaaaactacaaatcc--gcttcaagtagaatcaattccggaggcagaatcaatt 99  Q
    |||||||| | || |||||||| | |||||||||| |||||  |||| ||||||||||  |||||||||||||| ||||||||| ||| ||||||||    
T  4662912 gagttgaactatacatttgtgtgtaaaaatcaattctagaaacaaaagctacaaatcctagcttcaagtagaataaattccggatgcaaaatcaatt 4663008  T

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Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 168
Target Start/End: Original strand, 13384659 - 13384819
Alignment:
Q  1 aagtgagttgaattgtaaatttgtgtatgaaaatcaattatagaatgaaaaactacaaa--tccgcttcaagtagaatcaattccggaggcagaatcaat 98  Q
    |||||||||||| | ||||||||||| |||||||||||| |||||| |||| |||||||  |  ||||||| |||||||||||  ||||  ||||  |||    
T  13384659 aagtgagttgaactataaatttgtgtgtgaaaatcaattctagaatcaaaagctacaaattttagcttcaaatagaatcaattttggagaaagaacaaat 13384758  T
Q  99 tatactcgatggcaaccaaagcaaccaaacatgtcagaatcaattatacacatccataatcaattttggt 168  Q
    |  ||||||   |||      |||||||||||||||||||||||| ||||| |||| |||||||| ||||    
T  13384759 tcgactcga---caa------caaccaaacatgtcagaatcaattctacacctccaaaatcaattatggt 13384819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 116 - 189
Target Start/End: Original strand, 15677911 - 15677984
Alignment:
Q  116 aaagcaaccaaacatgtcagaatcaattatacacatccataatcaattttggttcctctagaagtggaaccaaa 189  Q
    |||||||||||||||||||||||||||| ||||  |||| ||||||||||    ||| ||||||||||||||||    
T  15677911 aaagcaaccaaacatgtcagaatcaattgtacaactccacaatcaattttaacccctgtagaagtggaaccaaa 15677984  T

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Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 26100151 - 26100234
Alignment:
Q  1 aagtgagttgaattgtaaatttgtgtatgaaaatcaattatagaatgaaaaactacaaatcc--gcttcaagtagaatcaattc 82  Q
    ||||||||||||   ||||||||||| | ||||||||||||||||| |||| ||||||||||  ||||||| ||||| ||||||    
T  26100151 aagtgagttgaaccataaatttgtgtgtaaaaatcaattatagaatcaaaagctacaaatcctagcttcaaatagaaccaattc 26100234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 121 - 189
Target Start/End: Complemental strand, 32101040 - 32100972
Alignment:
Q  121 aaccaaacatgtcagaatcaattatacacatccataatcaattttggttcctctagaagtggaaccaaa 189  Q
    ||||||||||||||||||||||| ||||||| || |||||| | | || |||||| |||||||||||||    
T  32101040 aaccaaacatgtcagaatcaattctacacattcagaatcaactctagtccctctaaaagtggaaccaaa 32100972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 118
Target Start/End: Complemental strand, 32927972 - 32927853
Alignment:
Q  1 aagtgagttgaattgtaaatttgtgtatgaaaatcaattatagaatgaaaaactacaaatcc--gcttcaagtagaatcaattccggaggcagaatcaat 98  Q
    |||||||||||| | ||||||||||| | ||||| |||| || ||| |||| ||||||||||  ||||||||||||||||| |   |||||| |||||||    
T  32927972 aagtgagttgaactataaatttgtgtgtaaaaatgaattctataatcaaaagctacaaatcctagcttcaagtagaatcaactattgaggcaaaatcaat 32927873  T
Q  99 tatactcgatggcaaccaaa 118  Q
    | |||| ||  |||||||||    
T  32927872 tctactggaaagcaaccaaa 32927853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 220 - 263
Target Start/End: Complemental strand, 39648424 - 39648381
Alignment:
Q  220 tgattctaacttgaaactaggatttgtagcttttgactccaaac 263  Q
    |||||||||||| || ||||||||||||||||||||||||||||    
T  39648424 tgattctaactttaagctaggatttgtagcttttgactccaaac 39648381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 38868823 - 38868766
Alignment:
Q  1 aagtgagttgaattgtaaatttgtgtatgaaaatcaattatagaatgaaaaactacaa 58  Q
    |||||||| ||| | ||||||||||  ||||||||||||||||||| |||||||||||    
T  38868823 aagtgagtagaactataaatttgtgcgtgaaaatcaattatagaataaaaaactacaa 38868766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 220 - 292
Target Start/End: Complemental strand, 11791818 - 11791746
Alignment:
Q  220 tgattctaacttgaaactaggatttgtagcttttgactccaaacgtgattttcatactaaaattcattgttca 292  Q
    |||||||| ||| || |||||||||||||||||||| ||  ||||||||||| | ||||||||| | ||||||    
T  11791818 tgattctaccttcaagctaggatttgtagcttttgagtctcaacgtgatttttacactaaaatttactgttca 11791746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 117
Target Start/End: Original strand, 16972084 - 16972187
Alignment:
Q  16 taaatttgtgtatgaaaatcaattatagaatgaaaaactacaaatcc--gcttcaagtagaatcaattccggaggcagaatcaattatactcgatggcaa 113  Q
    ||||||||||| | |||||||||| || ||| ||||||||||||| |  ||||||| || |||||| || | ||||| |||||||| |||||||| |||     
T  16972084 taaatttgtgtttaaaaatcaattctaaaattaaaaactacaaattctagcttcaaatacaatcaactctgaaggcaaaatcaattctactcgatagcat 16972183  T
Q  114 ccaa 117  Q
    ||||    
T  16972184 ccaa 16972187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 121 - 189
Target Start/End: Original strand, 39648263 - 39648331
Alignment:
Q  121 aaccaaacatgtcagaatcaattatacacatccataatcaattttggttcctctagaagtggaaccaaa 189  Q
    |||||||||||||| |||||||||||||  || | |||||||||||  ||||||| ||||| |||||||    
T  39648263 aaccaaacatgtcaaaatcaattatacatctctagaatcaattttgactcctctaaaagtgtaaccaaa 39648331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 8 - 52
Target Start/End: Original strand, 40769379 - 40769423
Alignment:
Q  8 ttgaattgtaaatttgtgtatgaaaatcaattatagaatgaaaaa 52  Q
    ||||||| ||||||||||| ||||||||||||||||||| |||||    
T  40769379 ttgaattataaatttgtgtgtgaaaatcaattatagaataaaaaa 40769423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 32101153 - 32101094
Alignment:
Q  1 aagtgagttgaattgtaaatttgtgtatgaaaatcaattatagaatgaaaaactacaaat 60  Q
    |||||||||||| | ||||||||| ||||||||| |||| || ||| |||||||||||||    
T  32101153 aagtgagttgaactataaatttgtatatgaaaattaattttaaaattaaaaactacaaat 32101094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 116 - 163
Target Start/End: Original strand, 32994337 - 32994384
Alignment:
Q  116 aaagcaaccaaacatgtcagaatcaattatacacatccataatcaatt 163  Q
    ||||||||||||||| ||| |||||||| |||||||||| ||||||||    
T  32994337 aaagcaaccaaacatatcataatcaattctacacatccagaatcaatt 32994384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 4 - 57
Target Start/End: Original strand, 6027057 - 6027110
Alignment:
Q  4 tgagttgaattgtaaatttgtgtatgaaaatcaattatagaatgaaaaactaca 57  Q
    |||||| || ||||||||||| |||||||||||||| |||||| |||| |||||    
T  6027057 tgagttaaactgtaaatttgtatatgaaaatcaattctagaatcaaaagctaca 6027110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 82
Target Start/End: Original strand, 32994262 - 32994330
Alignment:
Q  16 taaatttgtgtatgaaaatcaattatagaatgaaaaactacaaatc--cgcttcaagtagaatcaattc 82  Q
    ||||||||||||| |||||||||| |||| | |||| ||| |||||   ||||||||||||||||||||    
T  32994262 taaatttgtgtataaaaatcaattctagactcaaaagctagaaatcatagcttcaagtagaatcaattc 32994330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 116 - 165
Target Start/End: Complemental strand, 42455884 - 42455835
Alignment:
Q  116 aaagcaaccaaacatgtcagaatcaattatacacatccataatcaatttt 165  Q
    ||||||||||||||||||| |||||||| |||   |||||||||||||||    
T  42455884 aaagcaaccaaacatgtcaaaatcaattctactgctccataatcaatttt 42455835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 219 - 255
Target Start/End: Complemental strand, 1836298 - 1836262
Alignment:
Q  219 ttgattctaacttgaaactaggatttgtagcttttga 255  Q
    |||||||||||||||| ||||||| ||||||||||||    
T  1836298 ttgattctaacttgaagctaggatgtgtagcttttga 1836262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 116 - 164
Target Start/End: Original strand, 5859178 - 5859226
Alignment:
Q  116 aaagcaaccaaacatgtcagaatcaattatacacatccataatcaattt 164  Q
    |||||||| |||||| |||||||||||| ||||| |||||||| |||||    
T  5859178 aaagcaactaaacatatcagaatcaattttacacctccataattaattt 5859226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0197 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0197
Description:

Target: scaffold0197; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 130 - 185
Target Start/End: Original strand, 31542 - 31597
Alignment:
Q  130 tgtcagaatcaattatacacatccataatcaattttggttcctctagaagtggaac 185  Q
    |||||||||||||| ||||  || | ||||||||||||| ||||||||||||||||    
T  31542 tgtcagaatcaattttacaggtctaaaatcaattttggtccctctagaagtggaac 31597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 222 - 296
Target Start/End: Complemental strand, 23675 - 23602
Alignment:
Q  222 attctaacttgaaactaggatttgtagcttttgactccaaacgtgattttcatactaaaattcattgttcaactc 296  Q
    ||||||||| ||| |||||||||||||||||||| || | |||||||||| | ||||||||| ||  ||||||||    
T  23675 attctaact-gaagctaggatttgtagcttttgaatctagacgtgatttttagactaaaatttatcattcaactc 23602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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