View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7708A_low_106 (Length: 292)
Name: NF7708A_low_106
Description: NF7708A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7708A_low_106 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 144; Significance: 9e-76; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 144; E-Value: 9e-76
Query Start/End: Original strand, 136 - 283
Target Start/End: Original strand, 28518944 - 28519091
Alignment:
| Q |
136 |
acttagttatcatgaagccaaagagtccattgtatatagctacacaaagagcttcaatgcatttgctgcaaaactgtcagaaggtgaagtcaataagtta |
235 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
28518944 |
acttagttatcatgaagccaaagagtccattgtatatagctacacaaagagcttcaatgcatttgctgcaaaactgtcagaagatgaagtcaataagtta |
28519043 |
T |
|
| Q |
236 |
tctggtgtgtataattttttctctagcttaaaatttgtagatattgtt |
283 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28519044 |
tctggtgtgtataattttttctctagcttaaaatttgtagatattgtt |
28519091 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 6 - 56
Target Start/End: Original strand, 28518816 - 28518866
Alignment:
| Q |
6 |
atcttctgtgaagggaaggtaaccttattaattcaatcaagcatttcttta |
56 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28518816 |
atcttctgtgaagggaaggtaaccttattaattcaatcaagcatttcttta |
28518866 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 51; Significance: 3e-20; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 148 - 238
Target Start/End: Complemental strand, 12728953 - 12728863
Alignment:
| Q |
148 |
tgaagccaaagagtccattgtatatagctacacaaagagcttcaatgcatttgctgcaaaactgtcagaaggtgaagtcaataagttatct |
238 |
Q |
| |
|
|||||||||||||||||| ||||| ||||||||||||||||| |||||||||||||| ||||| || || | ||||| ||| ||||||||| |
|
|
| T |
12728953 |
tgaagccaaagagtccatagtatacagctacacaaagagctttaatgcatttgctgctaaactatccgaggatgaagccaacaagttatct |
12728863 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 148 - 240
Target Start/End: Original strand, 34291144 - 34291236
Alignment:
| Q |
148 |
tgaagccaaagagtccattgtatatagctacacaaagagcttcaatgcatttgctgcaaaactgtcagaaggtgaagtcaataagttatctgg |
240 |
Q |
| |
|
|||||||||||| ||||| ||||| ||||||||||||||||| |||||||||||||| |||||||| || | ||||| || ||||||||||| |
|
|
| T |
34291144 |
tgaagccaaagaatccatagtatacagctacacaaagagctttaatgcatttgctgctaaactgtctgaggatgaagcaaacaagttatctgg |
34291236 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University