View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7708A_low_110 (Length: 288)
Name: NF7708A_low_110
Description: NF7708A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7708A_low_110 |
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Alignment Details
Target: chr7 (Bit Score: 235; Significance: 1e-130; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 7 - 257
Target Start/End: Complemental strand, 12487819 - 12487569
Alignment:
| Q |
7 |
actggctgccctgtggtgccgtcatagaggattatggcggaaaaacctacaacatcagccgatatttaccatgggggcgagcccaaaaatagccaccaat |
106 |
Q |
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| T |
12487819 |
actggctgccctgtggtgccgtcatagaggattatggcggaaaaacctacaacatcagccgatatttaccatgggggcgagcccaaaaatagccaccaat |
12487720 |
T |
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| Q |
107 |
atccaccatgaccgacattcgaaaacactgtattgaacttgactgacagactttaaaacaaactaagaccgcattgtcaattttccattgagagcacact |
206 |
Q |
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| T |
12487719 |
atgcaccatggccgacattcgaaaacactgtattgaacttgactgacagactttaaaacaaactaagaccacattgtcaattttccattgaaagcacact |
12487620 |
T |
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| Q |
207 |
cacattcaactagttagtttgtgtagttgcaaactataataatatcagtga |
257 |
Q |
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| T |
12487619 |
cacattcaactagttagtttgtgtagttgcaaactataataatatcagtga |
12487569 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 48 - 231
Target Start/End: Complemental strand, 12541599 - 12541412
Alignment:
| Q |
48 |
aaaacctacaacatcagccgatatttaccatgggggcgagcccaaaaatagccaccaatatccaccatgaccgacattcgaaaacactgt-----attga |
142 |
Q |
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| T |
12541599 |
aaaacctacaacgtcagtcgatatttacaaagagggcaagcccaaaaatcgccaccgatatcctccatggccgacattcgaaaacactgtattgtattga |
12541500 |
T |
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| Q |
143 |
acttgactgacagactttaaaacaaactaagaccgcattgtcaattttccattgagagcacactcacattcaactagttagtttgtgta |
231 |
Q |
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| T |
12541499 |
acttgactgacagactttaaaacaaactaagaccacgttgtcaattttccatt-aaagcacactcacattcaattatttagtttgtgta |
12541412 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 48 - 176
Target Start/End: Complemental strand, 12509402 - 12509274
Alignment:
| Q |
48 |
aaaacctacaacatcagccgatatttaccatgggggcgagcccaaaaatagccaccaatatccaccatgaccgacattcgaaaacactgtattgaacttg |
147 |
Q |
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|||||||||||| |||| |||||| ||| | |||||| ||||||||||| |||||| |||||| ||||| |||| |||||| ||||| | |||||||||| |
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| T |
12509402 |
aaaacctacaacgtcagtcgatatctacgaagggggcaagcccaaaaatcgccaccgatatcctccatggccgatattcgataacacaggattgaacttg |
12509303 |
T |
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| Q |
148 |
actgacagactttaaaacaaactaagacc |
176 |
Q |
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||| || ||||||||||| | ||||||| |
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| T |
12509302 |
actctcaaactttaaaacataataagacc |
12509274 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 183 - 224
Target Start/End: Complemental strand, 12508940 - 12508899
Alignment:
| Q |
183 |
tcaattttccattgagagcacactcacattcaactagttagt |
224 |
Q |
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| T |
12508940 |
tcaattttccattgaaagcacactcgcattcaactacttagt |
12508899 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 28 - 108
Target Start/End: Original strand, 34498884 - 34498964
Alignment:
| Q |
28 |
tcatagaggattatggcggaaaaacctacaacatcagccgatatttaccatgggggcgagcccaaaaatagccaccaatat |
108 |
Q |
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| T |
34498884 |
tcatagaggattatgctggaaagacctgcaatatcgaccgatatttaccattgcggcgagcccaaaaaccgccaccgatat |
34498964 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 28 - 108
Target Start/End: Original strand, 27610409 - 27610489
Alignment:
| Q |
28 |
tcatagaggattatggcggaaaaacctacaacatcagccgatatttaccatgggggcgagcccaaaaatagccaccaatat |
108 |
Q |
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| T |
27610409 |
tcatagaggattatgctggaaagacctgcaatattgaccgatatttaccattgcggcgagcccaaaaaccgccaccgatat |
27610489 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 18 - 110
Target Start/End: Original strand, 40554379 - 40554471
Alignment:
| Q |
18 |
tgtggtgccgtcatagaggattatggcggaaaaacctacaacatcagccgatatttaccatgggggcgagcccaaaaatagccaccaatatcc |
110 |
Q |
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| T |
40554379 |
tgtggcgccgtcatatcggatcatggcggaaaatcctgccatatcagccgaaattgggcatggcggagagcccaaaaattgccaccgatatcc |
40554471 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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