View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7708A_low_118 (Length: 286)
Name: NF7708A_low_118
Description: NF7708A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7708A_low_118 |
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Alignment Details
Target: chr4 (Bit Score: 268; Significance: 1e-150; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 268; E-Value: 1e-150
Query Start/End: Original strand, 9 - 280
Target Start/End: Original strand, 56045299 - 56045570
Alignment:
| Q |
9 |
ataatatcacagcacaacaaattggatcaggttaccatggccttggaattggtgcattcacacttgattgggctggaatttcagcttatcatggaagccc |
108 |
Q |
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| T |
56045299 |
ataatatcacagcacaacaaattggatcaggttaccatggacttggaattggtgcattcacacttgattgggctggaatttcagcttatcatggaagccc |
56045398 |
T |
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| Q |
109 |
acttgttgcaccgtggacttccattgttaatgttggggttggatttatcatgttcatctatataattctacccgtatgttactggaggtttaacactttt |
208 |
Q |
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| T |
56045399 |
acttgttgcaccgtggacttccattgttaatgttggggttggatttatcatgttcatctatataattctacccgtatgttactggaggtttaacactttt |
56045498 |
T |
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| Q |
209 |
gatgctaggaagtttcctatattctctaatcagttgttcacgtcaagtggacacaagtatgacacgacaaag |
280 |
Q |
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| T |
56045499 |
gatgctaggaagtttcctatattctctaatcagttgttcacgtcaagtggacacaagtatgacacgacaaag |
56045570 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 65 - 261
Target Start/End: Original strand, 55706814 - 55707012
Alignment:
| Q |
65 |
ttcacacttgattgggctggaatttcagcttatcatggaagcccacttgttgcaccgtggacttccattgttaatgttggggttggatttatcatgttca |
164 |
Q |
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| T |
55706814 |
ttcacacttgactgcgcttggatttcagcttatcatggaagccctcttgttacaccgtggtcttccactgttaatgtttgggttggatttatcttgttca |
55706913 |
T |
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| Q |
165 |
tctatataattctacccgt-atgttactggaggtttaaca-cttttgatgctaggaagtttcctatattctctaatcagttgttcacgtcaagtggaca |
261 |
Q |
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| T |
55706914 |
tctatataattctatctataatgttagtggaagtttaacaccttttgatgctaggaagtttcctatactttctaatcagttgttcacatccagtggaca |
55707012 |
T |
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