View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7708A_low_12 (Length: 463)
Name: NF7708A_low_12
Description: NF7708A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7708A_low_12 |
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Alignment Details
Target: chr7 (Bit Score: 267; Significance: 1e-149; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 95 - 453
Target Start/End: Original strand, 24215553 - 24215911
Alignment:
| Q |
95 |
ccaattttaagacattcactcatatatataacagcactaaaaaatcacaaagataaaacgaaacaaaacacaatacacacgaataattgaaatcaagtct |
194 |
Q |
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| T |
24215553 |
ccaattttaagacattcactcatatatataacagcactaaaaaatcacaaagataaaacgatacaaaacacaatacacacgaataattgaaatcaagtct |
24215652 |
T |
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| Q |
195 |
gacgagaatagagacgacgaccgatctcaaatgaaacaaaagcatcaacagttgcatacttaacctgatcagcactaagcaactgactatcccacctact |
294 |
Q |
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| T |
24215653 |
gacgagaatagagacgacaaccgatctcaaatgaaacaaaagcatcaacagttgcatacttaacctgatcagcactaagcaactgactatcccacctact |
24215752 |
T |
|
| Q |
295 |
catagaaatgttctgcggcatctcaacaatcttcccaagcaagcacgacgcaaatgctttaagctcactactccttagtatctctcgctcacacaacaac |
394 |
Q |
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|||||||||||| |||||| ||||||||||||||||||||| ||| ||||||| |||||||||||||||||||||||||||||| |||| ||||| | |
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| T |
24215753 |
catagaaatgttatgcggcttctcaacaatcttcccaagcaggcattctgcaaatgttttaagctcactactccttagtatctctcgatcacccaacacc |
24215852 |
T |
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| Q |
395 |
tgtgaagcatggttacgcaaatcaccatcattctccaactgaagcccacgatattctag |
453 |
Q |
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| T |
24215853 |
tgggaagcaaggttacgcaaatcaacataattcgccaagtggagaccatgatcttctag |
24215911 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 117 - 274
Target Start/End: Original strand, 24224388 - 24224547
Alignment:
| Q |
117 |
tatatataacagcactaaaaaatcacaaagataaaacgaaacaaaacacaatacacac--gaataattgaaatcaagtctgacgagaatagagacgacga |
214 |
Q |
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| T |
24224388 |
tataaataacagcactgaaaaatcacaaagataaaacaaaaccaaacacagaacatacatgaatcattgaaatcaattctgctttgaataaagacggcga |
24224487 |
T |
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| Q |
215 |
ccgatctcaaatgaaacaaaagcatcaacagttgcatacttaacctgatcagcactaagc |
274 |
Q |
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| T |
24224488 |
ccaatctcaaacgaaacaaaagcatcaacagtagcatatttaacctgatcaacattaagc |
24224547 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 198 - 302
Target Start/End: Original strand, 24209902 - 24210006
Alignment:
| Q |
198 |
gagaatagagacgacgaccgatctcaaatgaaacaaaagcatcaacagttgcatacttaacctgatcagcactaagcaactgactatcccacctactcat |
297 |
Q |
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||||||||||||||||||| |||||||| |||||||||||||||||||||||| | ||||||||| |||||| ||| | || |||||||||||||||| |
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| T |
24209902 |
gagaatagagacgacgaccaatctcaaaggaaacaaaagcatcaacagttgcaaatttaacctgaatagcactgagccaaggattatcccacctactcat |
24210001 |
T |
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| Q |
298 |
agaaa |
302 |
Q |
| |
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|||| |
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| T |
24210002 |
cgaaa |
24210006 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 193 - 333
Target Start/End: Complemental strand, 24229652 - 24229512
Alignment:
| Q |
193 |
ctgacgagaatagagacgacgaccgatctcaaatgaaacaaaagcatcaacagttgcatacttaacctgatcagcactaagcaactgactatcccaccta |
292 |
Q |
| |
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|||| ||||||| ||||||||| | |||||||| |||| ||||||||||||||| ||||||||||||||||| | ||||| || ||||||||||| |
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| T |
24229652 |
ctgatgagaataaagacgacgagcaatctcaaaggaaagaaaagcatcaacagtagcatacttaacctgatcccaatcaagcattggattatcccaccta |
24229553 |
T |
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| Q |
293 |
ctcatagaaatgttctgcggcatctcaacaatcttcccaag |
333 |
Q |
| |
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||| | | ||| || |||| ||||||||||||||||||| |
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| T |
24229552 |
ctcctcgtaatcctcgacggcttctcaacaatcttcccaag |
24229512 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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