View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7708A_low_123 (Length: 278)
Name: NF7708A_low_123
Description: NF7708A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7708A_low_123 |
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| [»] scaffold0140 (1 HSPs) |
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| [»] scaffold0129 (1 HSPs) |
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Alignment Details
Target: scaffold0140 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: scaffold0140
Description:
Target: scaffold0140; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 257
Target Start/End: Original strand, 36164 - 36420
Alignment:
| Q |
1 |
tcctccatatgttcgtccaggagtagtaagaagagttgaagcatcaccttcgaatgtcactaagcttccatgtgattgcaattgtgaagagatgttgaaa |
100 |
Q |
| |
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||||||||||||| ||||||||||||||||||||| | |||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||| |
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| T |
36164 |
tcctccatatgtttgtccaggagtagtaagaagagcttaagcatcaccttcgaatgtcacaaaacttccatgtgattgcaattgtgaagagatgttgaaa |
36263 |
T |
|
| Q |
101 |
gacattactagaataatgaaggaatttggaatcaacaaaaatgagaagttaaagaagaagctccaatattcaagaaagcaggcaaatttgtttatggttc |
200 |
Q |
| |
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||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||| |
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| T |
36264 |
gacattactggaataatgaaggaattcggaatcaacaaaaatgagaagttaaagaagaagctccaatactcaagaaagaaggcaaatttgtttatggtta |
36363 |
T |
|
| Q |
201 |
tgttggttgtatcttgggcaatgttcatttcatatatgaagatgtagtgtaatgact |
257 |
Q |
| |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
36364 |
tgttggttgtattttgggcaatgttcatttcatatatgaagatgtagtgtaatgact |
36420 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 142; Significance: 1e-74; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 1 - 250
Target Start/End: Original strand, 23573471 - 23573720
Alignment:
| Q |
1 |
tcctccatatgttcgtccaggagtagtaagaagagttgaagcatcaccttcgaatgtcactaagcttccatgtgattgcaattgtgaagagatgttgaaa |
100 |
Q |
| |
|
|||| |||||||||||||||||| ||||||||||| |||||||||| | ||| |||| || || |||| |||||||||||||||||||||| || ||||| |
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| T |
23573471 |
tcctgcatatgttcgtccaggaggagtaagaagagctgaagcatcatcatcggatgtaacaaaacttcgatgtgattgcaattgtgaagagctgctgaaa |
23573570 |
T |
|
| Q |
101 |
gacattactagaataatgaaggaatttggaatcaacaaaaatgagaagttaaagaagaagctccaatattcaagaaagcaggcaaatttgtttatggttc |
200 |
Q |
| |
|
||||||||| ||||||| || ||||| ||||||||||||||||| |||||||||||||| |||||||| ||||||||| ||||||||||||||||| || |
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| T |
23573571 |
gacattactggaataatcaacgaattcggaatcaacaaaaatgacaagttaaagaagaaactccaatactcaagaaagaaggcaaatttgtttatgttta |
23573670 |
T |
|
| Q |
201 |
tgttggttgtatcttgggcaatgttcatttcatatatgaagatgtagtgt |
250 |
Q |
| |
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||||||||||||||||||||||||||| ||||| ||| |||||||||| |
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|
| T |
23573671 |
cattggttgtatcttgggcaatgttcattacatatctgacgatgtagtgt |
23573720 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 62 - 217
Target Start/End: Complemental strand, 31815098 - 31814943
Alignment:
| Q |
62 |
aagcttccatgtgattgcaattgtgaagagatgttgaaagacattactagaataatgaaggaatttggaatcaacaaaaatgagaagttaaagaagaagc |
161 |
Q |
| |
|
|||||||||||||||||||||||||||| | || ||||||| | ||| || |||| || | |||| || ||||| |||||||| |||||||||| |
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| T |
31815098 |
aagcttccatgtgattgcaattgtgaagtggtgatgaaagagttgactgtgatgttgaaagatctgggaacgaagaaaaacgagaagttgaagaagaagc |
31814999 |
T |
|
| Q |
162 |
tccaatattcaagaaagcaggcaaatttgtttatggttctgttggttgtatcttgg |
217 |
Q |
| |
|
| ||| ||||||| ||| || | || |||||||||||| ||||| |||| |||||| |
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|
| T |
31814998 |
tacaacattcaaggaagaagacgaacttgtttatggttttgttgattgtttcttgg |
31814943 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 117; Significance: 1e-59; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 1 - 205
Target Start/End: Complemental strand, 13507842 - 13507638
Alignment:
| Q |
1 |
tcctccatatgttcgtccaggagtagtaagaagagttgaagcatcaccttcgaatgtcactaagcttccatgtgattgcaattgtgaagagatgttgaaa |
100 |
Q |
| |
|
||||| |||||||||||||| || ||||||||||||||||||||||||| || |||||| ||||||||||||||||||||||||||||||||| |||| |
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| T |
13507842 |
tcctctatatgttcgtccagtagcggtaagaagagttgaagcatcacctttgactgtcacaaagcttccatgtgattgcaattgtgaagagatgccgaaa |
13507743 |
T |
|
| Q |
101 |
gacattactagaataatgaaggaatttggaatcaacaaaaatgagaagttaaagaagaagctccaatattcaagaaagcaggcaaatttgtttatggttc |
200 |
Q |
| |
|
|||||||| ||||||||||||| || |||| |||||||| |||||| ||||||||||||||||||| ||||| ||| ||||||||||||||||| || |
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|
| T |
13507742 |
aacattactggaataatgaaggatttcagaataaacaaaaacgagaagctaaagaagaagctccaatactcaaggaagaaggcaaatttgtttatgattt |
13507643 |
T |
|
| Q |
201 |
tgttg |
205 |
Q |
| |
|
||||| |
|
|
| T |
13507642 |
tgttg |
13507638 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 1 - 205
Target Start/End: Original strand, 13507407 - 13507611
Alignment:
| Q |
1 |
tcctccatatgttcgtccaggagtagtaagaagagttgaagcatcaccttcgaatgtcactaagcttccatgtgattgcaattgtgaagagatgttgaaa |
100 |
Q |
| |
|
|||||| |||||||||| || || ||||||| || ||||||||||||||||| ||||| ||||||||| ||||||||||||||||||||||| ||||| |
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|
| T |
13507407 |
tcctccgtatgttcgtctagtagcggtaagaatagctgaagcatcaccttcgacggtcacaaagcttccacgtgattgcaattgtgaagagatgctgaaa |
13507506 |
T |
|
| Q |
101 |
gacattactagaataatgaaggaatttggaatcaacaaaaatgagaagttaaagaagaagctccaatattcaagaaagcaggcaaatttgtttatggttc |
200 |
Q |
| |
|
||||||||| |||||||||||| || |||||||||||| ||||||||||||||||||||| |||| ||||| ||| | |||||||||||||||||| |
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|
| T |
13507507 |
gacattactcaaataatgaaggatttcaaaatcaacaaaaacgagaagttaaagaagaagctctaatactcaaggaagaatgcaaatttgtttatggttt |
13507606 |
T |
|
| Q |
201 |
tgttg |
205 |
Q |
| |
|
||||| |
|
|
| T |
13507607 |
tgttg |
13507611 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 57; Significance: 7e-24; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 62 - 218
Target Start/End: Complemental strand, 7799543 - 7799387
Alignment:
| Q |
62 |
aagcttccatgtgattgcaattgtgaagagatgttgaaagacattactagaataatgaaggaatttggaatcaacaaaaatgagaagttaaagaagaagc |
161 |
Q |
| |
|
|||||||||||||||||||||||||||| | || ||||||| | ||| ||| |||| || || |||||||| |||||||||||||| |||||||||| |
|
|
| T |
7799543 |
aagcttccatgtgattgcaattgtgaagtggtgatgaaagatttgactgtgatattgaaagatttgggaatcaagaaaaatgagaagttgaagaagaagc |
7799444 |
T |
|
| Q |
162 |
tccaatattcaagaaagcaggcaaatttgtttatggttctgttggttgtatcttggg |
218 |
Q |
| |
|
| ||| ||||||| ||| || | || |||||||||||| ||||| |||| ||||||| |
|
|
| T |
7799443 |
tacaacattcaaggaagaagacgaacttgtttatggttttgttgattgtttcttggg |
7799387 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 62 - 218
Target Start/End: Complemental strand, 19398644 - 19398488
Alignment:
| Q |
62 |
aagcttccatgtgattgcaattgtgaagagatgttgaaagacattactagaataatgaaggaatttggaatcaacaaaaatgagaagttaaagaagaagc |
161 |
Q |
| |
|
|||||||||||||||||||||||||||| | || ||||||| | ||| ||| |||| || || |||||||| ||||||||||| || |||||||||| |
|
|
| T |
19398644 |
aagcttccatgtgattgcaattgtgaagtggtgatgaaagatttaactgtgatattgaaagatttgggaatcaagaaaaatgagaatttgaagaagaagc |
19398545 |
T |
|
| Q |
162 |
tccaatattcaagaaagcaggcaaatttgtttatggttctgttggttgtatcttggg |
218 |
Q |
| |
|
| ||| ||||||| ||| || | || |||||||||||| ||||| |||| ||||||| |
|
|
| T |
19398544 |
tacaacattcaaggaagaagacgaacttgtttatggttttgttgattgtttcttggg |
19398488 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0129 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0129
Description:
Target: scaffold0129; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 62 - 218
Target Start/End: Complemental strand, 3585 - 3429
Alignment:
| Q |
62 |
aagcttccatgtgattgcaattgtgaagagatgttgaaagacattactagaataatgaaggaatttggaatcaacaaaaatgagaagttaaagaagaagc |
161 |
Q |
| |
|
|||||||||||||||||||||||||||| | || ||||||| | ||| || |||| || | ||||| || ||||| |||||||| |||||||||| |
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|
| T |
3585 |
aagcttccatgtgattgcaattgtgaagtggtgatgaaagagttgactgtgatgttgaaagatctgggaatgaagaaaaacgagaagttgaagaagaagc |
3486 |
T |
|
| Q |
162 |
tccaatattcaagaaagcaggcaaatttgtttatggttctgttggttgtatcttggg |
218 |
Q |
| |
|
| ||| ||||||| ||| || | || |||||||||||| ||||| |||| ||||||| |
|
|
| T |
3485 |
tacaacattcaaggaagaagacgaacttgtttatggttttgttgattgtttcttggg |
3429 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 62 - 217
Target Start/End: Complemental strand, 22059491 - 22059336
Alignment:
| Q |
62 |
aagcttccatgtgattgcaattgtgaagagatgttgaaagacattactagaataatgaaggaatttggaatcaacaaaaatgagaagttaaagaagaagc |
161 |
Q |
| |
|
|||||||||||||||||||||||||||| | || ||||||| | ||| || |||| || | ||||| || ||||| |||||||| |||||||||| |
|
|
| T |
22059491 |
aagcttccatgtgattgcaattgtgaagtggtgatgaaagagttgactgtgatgttgaaagatctgggaatgaagaaaaacgagaagttgaagaagaagc |
22059392 |
T |
|
| Q |
162 |
tccaatattcaagaaagcaggcaaatttgtttatggttctgttggttgtatcttgg |
217 |
Q |
| |
|
| ||| ||||||| ||| || | || |||||||||||| ||||| |||| |||||| |
|
|
| T |
22059391 |
tacaacattcaaggaagaagacgaacttgtttatggttttgttgattgtttcttgg |
22059336 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 56 - 91
Target Start/End: Original strand, 51253217 - 51253252
Alignment:
| Q |
56 |
gtcactaagcttccatgtgattgcaattgtgaagag |
91 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||| |
|
|
| T |
51253217 |
gtcacaaagcttccatgtgattgcaattgtgaagag |
51253252 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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