View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7708A_low_125 (Length: 275)
Name: NF7708A_low_125
Description: NF7708A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7708A_low_125 |
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Alignment Details
Target: chr3 (Bit Score: 123; Significance: 3e-63; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 34 - 270
Target Start/End: Original strand, 37129099 - 37129341
Alignment:
| Q |
34 |
catgaattaactcacatggatatattttaatcaatttacgtgaaagtgaacatttttttaaggaagaagagcaattttcatcannnnnnnnnaaggatac |
133 |
Q |
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| T |
37129099 |
catgaattaactcacgtggagatattttaattaattcacgtggaagtgaacatttttt-aaggaaaaagagtaattttcatcatttttttttaaggattc |
37129197 |
T |
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| Q |
134 |
atgaaaccgtctaaacacaaaatatattctcatttgtgctatttacatcctttatttctggttacaccctgcaacactaatt-------aaacacaaatg |
226 |
Q |
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| T |
37129198 |
atgaaaccgtctgaacacaaaatatattcccatttgtgctatttacatcctttacttctggttacaccctccaacactaattcaaaaacaaaaaaaaatg |
37129297 |
T |
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| Q |
227 |
ccaaaaacgtcatctcatatttatatttcaaaaaccatattcct |
270 |
Q |
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| T |
37129298 |
ccaaaaacgtcatatcatatttatatttcaaaaaccatattcct |
37129341 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 131 - 264
Target Start/End: Original strand, 37121080 - 37121219
Alignment:
| Q |
131 |
tacatgaaaccgtctaaacacaaaatat--attctcatttgtgctatttacatcctttatttctggttacaccctgcaacactaatt----aaacacaaa |
224 |
Q |
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| T |
37121080 |
tacattaaaccgtctcaacacaaaatatatattctcatttgtgctatttatatcctttatttctggttacacccttcaatactaattacaaaaatttaaa |
37121179 |
T |
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| Q |
225 |
tgccaaaaacgtcatctcatatttatatttcaaaaaccat |
264 |
Q |
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| T |
37121180 |
taccaaaaacgccatctcatatttattttttaaaaaccat |
37121219 |
T |
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