View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7708A_low_126 (Length: 274)
Name: NF7708A_low_126
Description: NF7708A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7708A_low_126 |
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Alignment Details
Target: chr1 (Bit Score: 259; Significance: 1e-144; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 11 - 273
Target Start/End: Original strand, 33810741 - 33811003
Alignment:
| Q |
11 |
tagaggggtaagagagcaagggatcaaggattctaagatcacgtgcattaatctgaaccctatgcatgatagcatacttgtccacatcaagcaaagaccc |
110 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33810741 |
tagaggggtaagagagcaagggatcaaggattctaagatcacgtgcattaatctgaaccctatgcatgatagcatacttgtccacatcaagcaaagaccc |
33810840 |
T |
|
| Q |
111 |
ttggccagtaccatcaaaagcaatccagcttctagaagactgtgtcttcttcttcacaagagcctgtgggtcagcagggacaacgctaccatctcgagcc |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33810841 |
ttggccagtaccatcaaaagcaatccagcttctagaagactgtgtcttcttcttcacaagagcctgtgggtcagcagggacaacgctaccatctcgagcc |
33810940 |
T |
|
| Q |
211 |
atccctttactctatacctccaaccacttcaaatcacataccaaaaccaaactccaaactcga |
273 |
Q |
| |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33810941 |
atccctttaccctatacctccaaccacttcaaatcacataccaaaaccaaactccaaactcga |
33811003 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 11 - 273
Target Start/End: Original strand, 33870210 - 33870472
Alignment:
| Q |
11 |
tagaggggtaagagagcaagggatcaaggattctaagatcacgtgcattaatctgaaccctatgcatgatagcatacttgtccacatcaagcaaagaccc |
110 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33870210 |
tagaggggtaagagagcaagggatcaaggattctaagatcacgtgcattaatctgaaccctatgcatgatagcatacttgtccacatcaagcaaagaccc |
33870309 |
T |
|
| Q |
111 |
ttggccagtaccatcaaaagcaatccagcttctagaagactgtgtcttcttcttcacaagagcctgtgggtcagcagggacaacgctaccatctcgagcc |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
33870310 |
ttggccagtaccatcaaaagcaatccagcttctagaagactgtgtcttcttcttcacaagagcctgtgggtcagcagggacaacgctaccatctcgagcc |
33870409 |
T |
|
| Q |
211 |
atccctttactctatacctccaaccacttcaaatcacataccaaaaccaaactccaaactcga |
273 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
33870410 |
atccctttaccctatacctccaaccacttcaaatcacataccaaaaccaaactccaaactcga |
33870472 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 12 - 163
Target Start/End: Original strand, 33830917 - 33831068
Alignment:
| Q |
12 |
agaggggtaagagagcaagggatcaaggattctaagatcacgtgcattaatctgaaccctatgcatgatagcatacttgtccacatcaagcaaagaccct |
111 |
Q |
| |
|
||||||||||||| |||| |||||||||||||||||||||||||||| ||| |||||||||| ||||||| ||||||||||||||||| | | ||||| |
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| T |
33830917 |
agaggggtaagagggcaaaggatcaaggattctaagatcacgtgcatcaatatgaaccctattcatgataacatacttgtccacatcatgaatccaccct |
33831016 |
T |
|
| Q |
112 |
tggccagtaccatcaaaagcaatccagcttctagaagactgtgtcttcttct |
163 |
Q |
| |
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||||| ||| ||||||| |||||| ||| ||||||||||||||||||||| |
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| T |
33831017 |
tggcctgtagcatcaaactgaatccaacttgtagaagactgtgtcttcttct |
33831068 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 12 - 163
Target Start/End: Original strand, 33893080 - 33893231
Alignment:
| Q |
12 |
agaggggtaagagagcaagggatcaaggattctaagatcacgtgcattaatctgaaccctatgcatgatagcatacttgtccacatcaagcaaagaccct |
111 |
Q |
| |
|
||||||||||||| |||| |||||||||||||||||||||||||||| ||| |||||||||| ||||||| ||||||||||||||||| | | ||||| |
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| T |
33893080 |
agaggggtaagagggcaaaggatcaaggattctaagatcacgtgcatcaatatgaaccctattcatgataacatacttgtccacatcatgaatccaccct |
33893179 |
T |
|
| Q |
112 |
tggccagtaccatcaaaagcaatccagcttctagaagactgtgtcttcttct |
163 |
Q |
| |
|
||||| ||| ||||||| |||||| ||| ||||||||||||||||||||| |
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|
| T |
33893180 |
tggcctgtagcatcaaactgaatccaacttgtagaagactgtgtcttcttct |
33893231 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 108; Significance: 3e-54; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 14 - 169
Target Start/End: Complemental strand, 24408960 - 24408805
Alignment:
| Q |
14 |
aggggtaagagagcaagggatcaaggattctaagatcacgtgcattaatctgaaccctatgcatgatagcatacttgtccacatcaagcaaagacccttg |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||| || |
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| T |
24408960 |
aggggtaagagagcaagggatcaaggattctaagatcatgtgcattaatctgaaccctatgcatgatagcatacttgtccacatcaatttgagaccagtg |
24408861 |
T |
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| Q |
114 |
gccagtaccatcaaaagcaatccagcttctagaagactgtgtcttcttcttcacaa |
169 |
Q |
| |
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|||| ||| ||| |||||||||||||||| | |||||||||||||||||||||||| |
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| T |
24408860 |
gccattactatccaaagcaatccagcttccaaaagactgtgtcttcttcttcacaa |
24408805 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 12 - 100
Target Start/End: Original strand, 24410123 - 24410211
Alignment:
| Q |
12 |
agaggggtaagagagcaagggatcaaggattctaagatcacgtgcattaatctgaaccctatgcatgatagcatacttgtccacatcaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24410123 |
agaggggtaagagagcaagggatcaaggattctaagatcacatgcattaatctgaaccctatgcatgatagcatacttgtccacatcaa |
24410211 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 127 - 169
Target Start/End: Original strand, 24410634 - 24410676
Alignment:
| Q |
127 |
aaagcaatccagcttctagaagactgtgtcttcttcttcacaa |
169 |
Q |
| |
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|||||||||||||||| | |||||||||||||||||||||||| |
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|
| T |
24410634 |
aaagcaatccagcttccaaaagactgtgtcttcttcttcacaa |
24410676 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 190 - 221
Target Start/End: Complemental strand, 24408808 - 24408777
Alignment:
| Q |
190 |
acaacgctaccatctcgagccatccctttact |
221 |
Q |
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|
|||||||||||||||||||||||||||||||| |
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| T |
24408808 |
acaacgctaccatctcgagccatccctttact |
24408777 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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