View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7708A_low_133 (Length: 269)
Name: NF7708A_low_133
Description: NF7708A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7708A_low_133 |
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Alignment Details
Target: chr8 (Bit Score: 229; Significance: 1e-126; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 19 - 251
Target Start/End: Original strand, 23358208 - 23358440
Alignment:
| Q |
19 |
agaaagaccatagtgatcatggtttttacttgtggcagagctttgactatcctagtgatacaattcttccaggaatgaagcttggttggaaccttacgag |
118 |
Q |
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| T |
23358208 |
agaaagaccatagtgatcatggcttttacttgtggcagagctttgactatcctagtgatacaattcttccaggaatgaagcttggttggaaccttacgag |
23358307 |
T |
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| Q |
119 |
cggtcttaataggcaactaacagcttggaagaattgggatgacccttcttcgggtcaaacgacttatggctacataagaagtgacaatcctgaatcggag |
218 |
Q |
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| T |
23358308 |
cggtcttaataggcaactaacagcttggaagaattgggatgacccttcttcgggtcaaacgacttatggctacataagaagtgacaatcctgaatcggag |
23358407 |
T |
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| Q |
219 |
ataaggaatggttcgtcgatgatatacagaagt |
251 |
Q |
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| T |
23358408 |
ataaggaatggttcgtcgatgatatacagaagt |
23358440 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 48 - 110
Target Start/End: Complemental strand, 23343587 - 23343525
Alignment:
| Q |
48 |
ttgtggcagagctttgactatcctagtgatacaattcttccaggaatgaagcttggttggaac |
110 |
Q |
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| T |
23343587 |
ttgtggcagagttttgactatccaagtgatacatttttgccaggaatgaagcttggatggaac |
23343525 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 48 - 110
Target Start/End: Original strand, 23383656 - 23383718
Alignment:
| Q |
48 |
ttgtggcagagctttgactatcctagtgatacaattcttccaggaatgaagcttggttggaac |
110 |
Q |
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| T |
23383656 |
ttgtggcagagttttgactatccaagtgatacatttttgccaggaatgaagcttggatggaac |
23383718 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 45 - 98
Target Start/End: Original strand, 31705238 - 31705291
Alignment:
| Q |
45 |
tacttgtggcagagctttgactatcctagtgatacaattcttccaggaatgaag |
98 |
Q |
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| T |
31705238 |
tacttgtggcaaagctttgactatccctgtgatacaattttgccagggatgaag |
31705291 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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