View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7708A_low_137 (Length: 266)
Name: NF7708A_low_137
Description: NF7708A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7708A_low_137 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 7 - 258
Target Start/End: Original strand, 41704904 - 41705155
Alignment:
| Q |
7 |
gaagaccacttgcacactcaagtgctcgatttgtgtcaacatgacctgaattttccgagtaacggtgacaaatactagaggaagagcagttaagaggagg |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41704904 |
gaagaccacttgcacactcaagtgctcgatttgtgtcaacttgacctgaattttccaagtaacggtgacaaatactagaggaagagcagttaagaggaga |
41705003 |
T |
|
| Q |
107 |
aaccaagagacgaggggaacagttgaaaatgaacactgcgttggatgaagttatgttgaaaggaagtgactgatttaaccaaataccattgcttaccggc |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41705004 |
aaccaagagacgaggggaacagttgaaaatgaacactgtgttggatgaagttatgttgaaaggaagtgactgatttaaccaaataccattgcttaccggc |
41705103 |
T |
|
| Q |
207 |
atgtcttgtgtgacccatgaaccgggtaaccaaggtggtggctgcaacacca |
258 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41705104 |
atgtcttgtgtgacacatgaaccgggtaaccaaggtggtggctgcaacacca |
41705155 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 177 - 258
Target Start/End: Original strand, 1453265 - 1453346
Alignment:
| Q |
177 |
tgatttaaccaaataccattgcttaccggcatgtcttgtgtgacccatgaaccgggtaaccaaggtggtggctgcaacacca |
258 |
Q |
| |
|
|||||||| ||||| ||||||||||| |||| |||||||||| |||||||| |||||||||||| ||||||||| ||||| |
|
|
| T |
1453265 |
tgatttaagtaaatatcattgcttaccaacatgccttgtgtgacacatgaaccaggtaaccaaggttgtggctgcaccacca |
1453346 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 177 - 258
Target Start/End: Original strand, 1464957 - 1465038
Alignment:
| Q |
177 |
tgatttaaccaaataccattgcttaccggcatgtcttgtgtgacccatgaaccgggtaaccaaggtggtggctgcaacacca |
258 |
Q |
| |
|
|||||||| ||||| ||||||||||| |||| |||||||||| |||||||| |||||||||||| ||||||||| ||||| |
|
|
| T |
1464957 |
tgatttaagtaaatatcattgcttaccaacatgccttgtgtgacacatgaaccaggtaaccaaggttgtggctgcaccacca |
1465038 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University