View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7708A_low_138 (Length: 265)

Name: NF7708A_low_138
Description: NF7708A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7708A_low_138
NF7708A_low_138
[»] chr1 (16 HSPs)
chr1 (9-153)||(13244107-13244251)
chr1 (158-265)||(13244450-13244557)
chr1 (152-265)||(13080788-13080901)
chr1 (155-265)||(13086263-13086373)
chr1 (157-265)||(13094555-13094663)
chr1 (150-265)||(19279089-19279204)
chr1 (151-265)||(12963797-12963911)
chr1 (157-265)||(13129984-13130092)
chr1 (84-153)||(12963575-12963644)
chr1 (157-265)||(13161677-13161785)
chr1 (158-265)||(13271742-13271849)
chr1 (79-146)||(19278827-19278894)
chr1 (157-265)||(13070104-13070212)
chr1 (157-265)||(13204615-13204723)
chr1 (157-265)||(13101156-13101264)
chr1 (9-88)||(19278730-19278809)


Alignment Details
Target: chr1 (Bit Score: 109; Significance: 6e-55; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 9 - 153
Target Start/End: Original strand, 13244107 - 13244251
Alignment:
Q  9 gagatgaagggcaaggcagcaaaagaaaatcttcaccacttcttggacaaatgtataactgagtacaaaggaaatgaagatgtagatgaatctcgttatt 108  Q
    |||| ||||||||||||||| | ||||||||||||||| |||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  13244107 gagaagaagggcaaggcagctagagaaaatcttcaccaattcttggagaaatgtataactgattacaaaggaaatgaagatgtagatgaatctcgttatt 13244206  T
Q  109 gcctgctaaaagaactaatgaaagaaggattgggaaagagggaaa 153  Q
    |||||||||||||||||||||| ||| ||||||||||| ||||||    
T  13244207 gcctgctaaaagaactaatgaaggaaagattgggaaagggggaaa 13244251  T

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Target: chr1; HSP #2
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 158 - 265
Target Start/End: Original strand, 13244450 - 13244557
Alignment:
Q  158 ttgataagcttgtttaccttcatggagccatatgtgaaaccttaaggctatttcctcctctggcatttcagcacaagtgtgctatcaaatctgatatact 257  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||    
T  13244450 ttgataagcttgtttaccttcatggagccatatgtgaaaccttgaggctatatcctcctctggcatttcagcacaagtgcgctatcaaatctgatatact 13244549  T
Q  258 acctagtg 265  Q
    ||||||||    
T  13244550 acctagtg 13244557  T

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Target: chr1; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 152 - 265
Target Start/End: Original strand, 13080788 - 13080901
Alignment:
Q  152 aagagcttgataagcttgtttaccttcatggagccatatgtgaaaccttaaggctatttcctcctctggcatttcagcacaagtgtgctatcaaatctga 251  Q
    |||||||||||||||| ||||||||||||||||||||||||||| |||||||||||| |||| || | ||||||||||||||||||||||||||||| ||    
T  13080788 aagagcttgataagctagtttaccttcatggagccatatgtgaagccttaaggctatatccttctgtagcatttcagcacaagtgtgctatcaaatcgga 13080887  T
Q  252 tatactacctagtg 265  Q
    || ||| |||||||    
T  13080888 taaacttcctagtg 13080901  T

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Target: chr1; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 155 - 265
Target Start/End: Complemental strand, 13086373 - 13086263
Alignment:
Q  155 agcttgataagcttgtttaccttcatggagccatatgtgaaaccttaaggctatttcctcctctggcatttcagcacaagtgtgctatcaaatctgatat 254  Q
    ||||| |||| || || |||||||||||||| ||||||||| | || ||||| | ||||||| |  ||||||||||||||||||| |||||| |||||||    
T  13086373 agcttaataaactagtgtaccttcatggagctatatgtgaagcattgaggctttatcctcctgtaccatttcagcacaagtgtgcaatcaaagctgatat 13086274  T
Q  255 actacctagtg 265  Q
    |||||||||||    
T  13086273 actacctagtg 13086263  T

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Target: chr1; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 157 - 265
Target Start/End: Complemental strand, 13094663 - 13094555
Alignment:
Q  157 cttgataagcttgtttaccttcatggagccatatgtgaaaccttaaggctatttcctcctctggcatttcagcacaagtgtgctatcaaatctgatatac 256  Q
    ||||||||||| || ||||| |||||||| |||||||||||||||||||| | ||||||| |  | ||| |||| |  ||||| ||||||||||||||||    
T  13094663 cttgataagctagtatacctccatggagctatatgtgaaaccttaaggctttatcctcctgtaccttttgagcatatctgtgcaatcaaatctgatatac 13094564  T
Q  257 tacctagtg 265  Q
    |||||||||    
T  13094563 tacctagtg 13094555  T

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Target: chr1; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 150 - 265
Target Start/End: Original strand, 19279089 - 19279204
Alignment:
Q  150 gaaagagcttgataagcttgtttaccttcatggagccatatgtgaaaccttaaggctatttcctcctctggcatttcagcacaagtgtgctatcaaatct 249  Q
    |||||||||||||||||| ||||| ||||||||||| ||||||||| |||||||||| | ||| ||| |  ||||| | |||||||||||  | || ||     
T  19279089 gaaagagcttgataagctagtttatcttcatggagctatatgtgaagccttaaggctttatccacctgtaccatttgaacacaagtgtgcagttaattcc 19279188  T
Q  250 gatatactacctagtg 265  Q
    ||||||||||||||||    
T  19279189 gatatactacctagtg 19279204  T

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Target: chr1; HSP #7
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 151 - 265
Target Start/End: Original strand, 12963797 - 12963911
Alignment:
Q  151 aaagagcttgataagcttgtttaccttcatggagccatatgtgaaaccttaaggctatttcctcctctggcatttcagcacaagtgtgctatcaaatctg 250  Q
    |||| |||||||||||||||||| ||||||||||| || |||||| | |||||||| | ||||||| |  ||||| | ||||||||||| || ||||| |    
T  12963797 aaagggcttgataagcttgtttatcttcatggagctatttgtgaagctttaaggctttatcctcctataccatttgaacacaagtgtgcaattaaatcag 12963896  T
Q  251 atatactacctagtg 265  Q
    ||||| |||||||||    
T  12963897 atatattacctagtg 12963911  T

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Target: chr1; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 157 - 265
Target Start/End: Complemental strand, 13130092 - 13129984
Alignment:
Q  157 cttgataagcttgtttaccttcatggagccatatgtgaaaccttaaggctatttcctcctctggcatttcagcacaagtgtgctatcaaatctgatatac 256  Q
    ||||||||||| || ||||| |||||||| |||||||||||||||||||| | ||||||| |  | ||| |||| |  ||| | ||||||||||||||||    
T  13130092 cttgataagctagtatacctccatggagctatatgtgaaaccttaaggctttatcctcctataccttttgagcatatctgttcaatcaaatctgatatac 13129993  T
Q  257 tacctagtg 265  Q
    |||||||||    
T  13129992 tacctagtg 13129984  T

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Target: chr1; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 84 - 153
Target Start/End: Original strand, 12963575 - 12963644
Alignment:
Q  84 gaagatgtagatgaatctcgttattgcctgctaaaagaactaatgaaagaaggattgggaaagagggaaa 153  Q
    ||||| || |||||||||| || ||||||||||||||| |||||||| ||||||||||||||| ||||||    
T  12963575 gaagacgtggatgaatctcattcttgcctgctaaaagatctaatgaaggaaggattgggaaagggggaaa 12963644  T

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Target: chr1; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 157 - 265
Target Start/End: Complemental strand, 13161785 - 13161677
Alignment:
Q  157 cttgataagcttgtttaccttcatggagccatatgtgaaaccttaaggctatttcctcctctggcatttcagcacaagtgtgctatcaaatctgatatac 256  Q
    ||||||||||| || ||||| |||||||| |||||||||||||||||||| | ||| ||| |  | ||| |||| |  ||||| |||||||| |||||||    
T  13161785 cttgataagctagtatacctccatggagctatatgtgaaaccttaaggctttatccacctataccttttgagcatatctgtgcaatcaaatccgatatac 13161686  T
Q  257 tacctagtg 265  Q
    |||||||||    
T  13161685 tacctagtg 13161677  T

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Target: chr1; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 158 - 265
Target Start/End: Complemental strand, 13271849 - 13271742
Alignment:
Q  158 ttgataagcttgtttaccttcatggagccatatgtgaaaccttaaggctatttcctcctctggcatttcagcacaagtgtgctatcaaatctgatatact 257  Q
    ||||||||||  |||||||||||| ||| |||||||||||||| || || | ||||||| |  ||||| | |||||||||||  | || |||||||||||    
T  13271849 ttgataagctgatttaccttcatgcagctatatgtgaaaccttgagactttatcctcctataccatttgatcacaagtgtgcagttaattctgatatact 13271750  T
Q  258 acctagtg 265  Q
    ||||||||    
T  13271749 acctagtg 13271742  T

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Target: chr1; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 79 - 146
Target Start/End: Original strand, 19278827 - 19278894
Alignment:
Q  79 gaaatgaagatgtagatgaatctcgttattgcctgctaaaagaactaatgaaagaaggattgggaaag 146  Q
    |||||||||| |  |||||||||| |||||||||| |||||||||||||||| ||| |||||||||||    
T  19278827 gaaatgaagacgcggatgaatctcattattgcctggtaaaagaactaatgaaggaaagattgggaaag 19278894  T

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Target: chr1; HSP #13
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 157 - 265
Target Start/End: Original strand, 13070104 - 13070212
Alignment:
Q  157 cttgataagcttgtttaccttcatggagccatatgtgaaaccttaaggctatttcctcctctggcatttcagcacaagtgtgctatcaaatctgatatac 256  Q
    |||||||| || || |||||||||||||| |||||||||||||| || || | ||||||| |  | ||| |||| |  ||||| |||||||| |||||||    
T  13070104 cttgataatctagtgtaccttcatggagctatatgtgaaaccttgagactttatcctcctgtaccttttgagcatatatgtgcaatcaaatccgatatac 13070203  T
Q  257 tacctagtg 265  Q
    |||||||||    
T  13070204 tacctagtg 13070212  T

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Target: chr1; HSP #14
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 157 - 265
Target Start/End: Complemental strand, 13204723 - 13204615
Alignment:
Q  157 cttgataagcttgtttaccttcatggagccatatgtgaaaccttaaggctatttcctcctctggcatttcagcacaagtgtgctatcaaatctgatatac 256  Q
    ||||||||||| || |||||||||||||| ||||||||| |||| || || | ||||||| |  | ||| |||| |  ||||| |||||||| |||||||    
T  13204723 cttgataagctagtgtaccttcatggagctatatgtgaagccttgagactttatcctcctgtaccttttgagcatatatgtgcaatcaaatccgatatac 13204624  T
Q  257 tacctagtg 265  Q
    |||||||||    
T  13204623 tacctagtg 13204615  T

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Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 157 - 265
Target Start/End: Complemental strand, 13101264 - 13101156
Alignment:
Q  157 cttgataagcttgtttaccttcatggagccatatgtgaaaccttaaggctatttcctcctctggcatttcagcacaagtgtgctatcaaatctgatatac 256  Q
    ||||||||||| || ||||| |||||||| |||||||||||||| ||||| | ||||||| |  | ||| |||| |  ||| | |||||||| |||||||    
T  13101264 cttgataagctagtgtacctccatggagctatatgtgaaaccttgaggctttatcctcctgtaccttttgagcatatatgttcaatcaaatccgatatac 13101165  T
Q  257 tacctagtg 265  Q
    | |||||||    
T  13101164 ttcctagtg 13101156  T

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Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 9 - 88
Target Start/End: Original strand, 19278730 - 19278809
Alignment:
Q  9 gagatgaagggcaaggcagcaaaagaaaatcttcaccacttcttggacaaatgtataactgagtacaaaggaaatgaaga 88  Q
    |||| |||||||| || ||| ||||||||||||||| | |||||| ||||||||||| || | ||||||||  |||||||    
T  19278730 gagaagaagggcacggtagctaaagaaaatcttcacgaattcttgaacaaatgtatatcttattacaaaggtgatgaaga 19278809  T

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