View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7708A_low_15 (Length: 444)

Name: NF7708A_low_15
Description: NF7708A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7708A_low_15
NF7708A_low_15
[»] chr3 (14 HSPs)
chr3 (14-438)||(5484450-5484872)
chr3 (14-256)||(5525676-5525916)
chr3 (14-196)||(5828161-5828344)
chr3 (14-198)||(5502897-5503079)
chr3 (14-198)||(5490083-5490266)
chr3 (14-196)||(5454907-5455089)
chr3 (14-194)||(20343528-20343709)
chr3 (31-198)||(5446346-5446513)
chr3 (31-174)||(5854208-5854351)
chr3 (14-127)||(5848890-5849003)
chr3 (15-128)||(5802494-5802607)
chr3 (250-314)||(5525588-5525652)
chr3 (376-436)||(5525497-5525557)
chr3 (370-438)||(20343322-20343390)
[»] chr6 (1 HSPs)
chr6 (31-198)||(25809299-25809466)


Alignment Details
Target: chr3 (Bit Score: 362; Significance: 0; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 14 - 438
Target Start/End: Complemental strand, 5484872 - 5484450
Alignment:
Q  14 agatggtgggagcggccgcttactttggtttggcaacattgtggacatgagaaagcatcctgatcaaggacaagacatttacatacggctggcatcttca 113  Q
    |||||||||||| ||| ||||||||||||||||||||||||||||||||||||| ||||||||   ||||||||| ||||||||||||||||||||||||    
T  5484872 agatggtgggagtggctgcttactttggtttggcaacattgtggacatgagaaaacatcctgacgtaggacaagaaatttacatacggctggcatcttca 5484773  T
Q  114 gaacttggtattttcatttccaaagacatattttatctcttcagtcagatatattgcacaaatttatttatttcatcatttgtgtgatagaactggtact 213  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||  ||||||||    
T  5484772 gaacttggtattttcatttccaaagacatattttatctcttcagtcagatatatagcacaaatttatttatttcatcatttgtgtgatag--ctggtact 5484675  T
Q  214 gataccttaactgtttaattaataggaaaagactacaaaacatataaatgccaacttctggaaataatcaatctctaggaattatgtactgttaaaaaca 313  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5484674 gataccttaactgtttaattaataggaaaagattacaaaacatataaatgccaacttctggaaataatcaatctctaggaattatgtactgttaaaaaca 5484575  T
Q  314 taaaattacgcggcattaataattctcttttcacttttccctatagatcttttttccttctttatctgcttcttgactgacatttacttcaaactacaga 413  Q
    |||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||    
T  5484574 taaaattacgtggcattaataattctcttttcacttttccctgtagatcttttttccttctttatctgcttcttgaatgacatttacttcaacctacaga 5484475  T
Q  414 tcatataaagaatacgagaaacttg 438  Q
    |||||||||||||||||||||||||    
T  5484474 tcatataaagaatacgagaaacttg 5484450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 14 - 256
Target Start/End: Complemental strand, 5525916 - 5525676
Alignment:
Q  14 agatggtgggagcggccgcttactttggtttggcaacattgtggacatgagaaagcatcctgatcaaggacaagacatttacatacggctggcatcttca 113  Q
    |||||||||||| ||| ||||||||||||||  ||||||||||||||||||||| ||||||||   |||||||||||||||||||||  |||||||||||    
T  5525916 agatggtgggagtggctgcttactttggtttaacaacattgtggacatgagaaaacatcctgacgtaggacaagacatttacatacgattggcatcttca 5525817  T
Q  114 gaacttggtattttcatttccaaagacatattttatctcttcagtcagatatattgcacaaatttatttatttcatcatttgtgtgatagaactggtact 213  Q
    |||||||||||||| | |||| |  |||||||||  || |||||| |||||||| ||||  |||||| |||||||||||||||||||||||||||| |||    
T  5525816 gaacttggtattttaacttcctatcacatatttttccttttcagttagatatatagcac--atttatatatttcatcatttgtgtgatagaactggcact 5525719  T
Q  214 gataccttaactgtttaattaataggaaaagactacaaaacat 256  Q
    | ||||||||| |||||||||||||||| ||| ||||||||||    
T  5525718 gctaccttaacagtttaattaataggaatagattacaaaacat 5525676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 14 - 196
Target Start/End: Original strand, 5828161 - 5828344
Alignment:
Q  14 agatggtgggagcggccgcttactttggtttggcaacattgtggacatgagaaagcatcctgatcaaggacaagacatttacatacggctggcatcttca 113  Q
    |||||||||||| ||| ||||||||||||||  ||| ||||||||||||||||| ||||||||   ||||||||||||||||||||| || ||||||||     
T  5828161 agatggtgggagtggctgcttactttggtttaacaatattgtggacatgagaaaacatcctgacgtaggacaagacatttacatacgactcgcatcttcc 5828260  T
Q  114 gaacttggtattttcatttccaaagacatattttatctcttcagtcagatatattgcacaaatttatttat-ttcatcatttgt 196  Q
    ||||||||||||||||||||||||||||||||||| ||||||||| ||||  || | |||||||||| ||| |||| |||||||    
T  5828261 gaacttggtattttcatttccaaagacatattttacctcttcagttagatgcataggacaaatttatatatattcagcatttgt 5828344  T

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Target: chr3; HSP #4
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 14 - 198
Target Start/End: Complemental strand, 5503079 - 5502897
Alignment:
Q  14 agatggtgggagcggccgcttactttggtttggcaacattgtggacatgagaaagcatcctgatcaaggacaagacatttacatacggctggcatcttca 113  Q
    |||||||||||| ||| ||||||||||||||| ||||||||| ||||||||||| ||||| || ||||||||||||||||||||||||||||||||||||    
T  5503079 agatggtgggagtggctgcttactttggtttgacaacattgtcgacatgagaaaacatccagaccaaggacaagacatttacatacggctggcatcttca 5502980  T
Q  114 gaacttggtattttcatttccaaagacatattttatctcttcagtcagatatattgcacaaatttatttatttcatcatttgtgt 198  Q
    || |||||||||||||||| | |  ||||||||| ||  |||||| |||||||  ||| |||||||  ||||||| |||||||||    
T  5502979 gagcttggtattttcatttgctattacatattttgtcctttcagttagatata--gcataaatttacatatttcaccatttgtgt 5502897  T

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Target: chr3; HSP #5
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 14 - 198
Target Start/End: Complemental strand, 5490266 - 5490083
Alignment:
Q  14 agatggtgggagcggccgcttactttggtttggcaacattgtggacatgagaaagcatcctgatcaaggacaagacatttacatacggctggcatcttca 113  Q
    |||||||||||| ||| || |||||||||||  ||||||||||||||||||||| ||||  || |||||||||||||||||||||||| |||||||||||    
T  5490266 agatggtgggagtggctgcatactttggtttaacaacattgtggacatgagaaaacatcaagaccaaggacaagacatttacatacggatggcatcttca 5490167  T
Q  114 gaacttggtattttcatttccaaagacatattttatctcttcagtcagatatattgcacaaatttatttatttcatcatttgtgt 198  Q
    ||||||||||||||||||||  |  ||||||||| ||| |||||| |||||||| ||| |||||||  ||||||| |||||||||    
T  5490166 gaacttggtattttcatttcttattacatattttgtcttttcagttagatatatagcataaattta-atatttcaccatttgtgt 5490083  T

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Target: chr3; HSP #6
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 14 - 196
Target Start/End: Complemental strand, 5455089 - 5454907
Alignment:
Q  14 agatggtgggagcggccgcttactttggtttggcaacattgtggacatgagaaagcatcctgatcaaggacaagacatttacatacggctggcatcttca 113  Q
    ||||| |||||| ||| || |||||||||||  ||||||||||||||||||||| ||||  || |||||||||||||||||||||||| |||||||||||    
T  5455089 agatgatgggagtggctgcatactttggtttcacaacattgtggacatgagaaaacatcaagaccaaggacaagacatttacatacggatggcatcttca 5454990  T
Q  114 gaacttggtattttcatttccaaagacatattttatctcttcagtcagatatattgcacaaatttatttatttcatcatttgt 196  Q
    ||||||||||||||| ||||  |  ||||||||| ||| |||||| |||||||| ||| ||| |||| ||||||| |||||||    
T  5454989 gaacttggtattttcttttcttattacatattttgtcttttcagttagatatatagcataaacttatatatttcaccatttgt 5454907  T

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Target: chr3; HSP #7
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 14 - 194
Target Start/End: Complemental strand, 20343709 - 20343528
Alignment:
Q  14 agatggtgggagcggccgcttactttggtttggcaacattgtggacatgagaaagcatcctgatcaaggacaagacatttacatacggctggcatcttca 113  Q
    |||||||||||| ||  ||||||||||||||| ||| ||| ||||||||||||| ||||  || ||||||||||||||||| |||||||| |||||||||    
T  20343709 agatggtgggagtggttgcttactttggtttgacaatattttggacatgagaaaacatcgagaccaaggacaagacatttatatacggctagcatcttca 20343610  T
Q  114 gaacttggtattttcatttccaaagacatattttatctcttcagtcagatatattgcacaaattt-atttatttcatcattt 194  Q
    ||||||||||||||||||||| |  |||| ||||  || | |||| ||||||||||||||||||| || ||||||| |||||    
T  20343609 gaacttggtattttcatttcctattacatctttttcctttccagttagatatattgcacaaatttcatatatttcagcattt 20343528  T

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Target: chr3; HSP #8
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 31 - 198
Target Start/End: Complemental strand, 5446513 - 5446346
Alignment:
Q  31 gcttactttggtttggcaacattgtggacatgagaaagcatcctgatcaaggacaagacatttacatacggctggcatcttcagaacttggtattttcat 130  Q
    ||||||| ||||||| | ||||||| ||||||||||  ||||  || |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5446513 gcttactctggtttgacgacattgttgacatgagaatacatcaagaccaaggacaagacatttacatacggctggcatcttcagaacttggtattttcat 5446414  T
Q  131 ttccaaagacatattttatctcttcagtcagatatattgcacaaatttatttatttcatcatttgtgt 198  Q
    ||   |  ||||||||| ||  |||||| |||||||| ||| |||||||  ||||||| |||||||||    
T  5446413 ttgttattacatattttgtcctttcagttagatatatagcataaatttacatatttcaccatttgtgt 5446346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 31 - 174
Target Start/End: Original strand, 5854208 - 5854351
Alignment:
Q  31 gcttactttggtttggcaacattgtggacatgagaaagcatcctgatcaaggacaagacatttacatacggctggcatcttcagaacttggtattttcat 130  Q
    ||||||||||||||| ||||||||| || |||||||| ||||| || |||||||||||||||| |||||||||||||||||||||||||||||||| |||    
T  5854208 gcttactttggtttgacaacattgttgatatgagaaaacatccagaccaaggacaagacattttcatacggctggcatcttcagaacttggtatttacat 5854307  T
Q  131 ttccaaagacatattttatctcttcagtcagatatattgcacaa 174  Q
    |||| |  |||| ||||  || ||||||| ||||||| ||||||    
T  5854308 ttcctattacatcttttgccttttcagtctgatatatagcacaa 5854351  T

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Target: chr3; HSP #10
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 14 - 127
Target Start/End: Original strand, 5848890 - 5849003
Alignment:
Q  14 agatggtgggagcggccgcttactttggtttggcaacattgtggacatgagaaagcatcctgatcaaggacaagacatttacatacggctggcatcttca 113  Q
    |||||||||||| ||| ||||||||||||||  ||||||||||||||||||||| ||||||||   ||||||||||||||||||||| || |||||||||    
T  5848890 agatggtgggagtggctgcttactttggtttaacaacattgtggacatgagaaaacatcctgacataggacaagacatttacatacgactcgcatcttca 5848989  T
Q  114 gaacttggtatttt 127  Q
    ||||| ||||||||    
T  5848990 gaactcggtatttt 5849003  T

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Target: chr3; HSP #11
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 15 - 128
Target Start/End: Original strand, 5802494 - 5802607
Alignment:
Q  15 gatggtgggagcggccgcttactttggtttggcaacattgtggacatgagaaagcatcctgatcaaggacaagacatttacatacggctggcatcttcag 114  Q
    |||||||| || ||| ||||||||||||||  ||| ||| ||||||||||||| ||||| ||   ||||||||||||||||||||| || ||||||||||    
T  5802494 gatggtggtagtggctgcttactttggtttaacaatattatggacatgagaaaacatccagacgtaggacaagacatttacatacgactcgcatcttcag 5802593  T
Q  115 aacttggtattttc 128  Q
    ||||||||||||||    
T  5802594 aacttggtattttc 5802607  T

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Target: chr3; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 250 - 314
Target Start/End: Complemental strand, 5525652 - 5525588
Alignment:
Q  250 aaaacatataaatgccaacttctggaaataatcaatctctaggaattatgtactgttaaaaacat 314  Q
    |||||| ||||||||||||||||| |||||||||| |||||||||||  |||| ||| |||||||    
T  5525652 aaaacacataaatgccaacttctgaaaataatcaacctctaggaattgagtaccgttcaaaacat 5525588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 376 - 436
Target Start/End: Complemental strand, 5525557 - 5525497
Alignment:
Q  376 tatctgcttcttgactgacatttacttcaaactacagatcatataaagaatacgagaaact 436  Q
    ||||||||| |||||||||||||||||||| |  ||||||||| |||||||| ||| ||||    
T  5525557 tatctgcttgttgactgacatttacttcaaccatcagatcataaaaagaataagaggaact 5525497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 370 - 438
Target Start/End: Complemental strand, 20343390 - 20343322
Alignment:
Q  370 cttctttatctgcttcttgactgacatttacttcaaactacagatcatataaagaatacgagaaacttg 438  Q
    ||||| || |||||| |||||||||||||| ||||| |  ||||||||| |||||||| ||| ||||||    
T  20343390 cttctatacctgcttgttgactgacatttatttcaaccctcagatcataaaaagaataagaggaacttg 20343322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 76; Significance: 6e-35; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 31 - 198
Target Start/End: Original strand, 25809299 - 25809466
Alignment:
Q  31 gcttactttggtttggcaacattgtggacatgagaaagcatcctgatcaaggacaagacatttacatacggctggcatcttcagaacttggtattttcat 130  Q
    ||||||| ||||||| | ||||||| ||||||||||  ||||  || |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25809299 gcttactctggtttgacgacattgttgacatgagaatacatcaagaccaaggacaagacatttacatacggctggcatcttcagaacttggtattttcat 25809398  T
Q  131 ttccaaagacatattttatctcttcagtcagatatattgcacaaatttatttatttcatcatttgtgt 198  Q
    ||   |  ||||||||| ||  |||||| |||||||| ||| |||||||  ||||||| |||||||||    
T  25809399 ttgttattacatattttgtcctttcagttagatatatagcataaatttacatatttcaccatttgtgt 25809466  T

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