View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7708A_low_155 (Length: 252)
Name: NF7708A_low_155
Description: NF7708A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7708A_low_155 |
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Alignment Details
Target: chr2 (Bit Score: 224; Significance: 1e-123; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 3 - 246
Target Start/End: Complemental strand, 39695340 - 39695097
Alignment:
| Q |
3 |
tcaacacatgtcctactcctattcgttggagcggcataggcattttcctggtaaccttatgccaacctggtaatagcactctgtcaagaaatgtgaggaa |
102 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39695340 |
tcaacacatgtcctgctcctattcgttggagcggcataggcattttcctggtaaccttatgccaacctggtaatagcactctgtcaagaaatgtgaggaa |
39695241 |
T |
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| Q |
103 |
aatgggtgctgatattaagacaataacagaaacagaactcgctgggattttaaaatggggtcctaatgaacgatccatgactaaagcttgaagtacaacc |
202 |
Q |
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||||||||||||||| ||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39695240 |
aatgggtgctgatatcaagactataacagaaacagaactagctgggattttaaaatggggtcctaatgaacgatccatgactaaagcttgaagtacaacc |
39695141 |
T |
|
| Q |
203 |
aagctactttggattgctattggagttgctaagaatatacttga |
246 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
39695140 |
aagcaactttggattgctattggagttgctaagaatatacttga |
39695097 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 3 - 246
Target Start/End: Original strand, 39934775 - 39935018
Alignment:
| Q |
3 |
tcaacacatgtcctactcctattcgttggagcggcataggcattttcctggtaaccttatgccaacctggtaatagcactctgtcaagaaatgtgaggaa |
102 |
Q |
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| T |
39934775 |
tcaacacatgtcctgctcctattcgctggagcggcataagtgatttgccggtaatcttatgccaacatggcaagagcaccctgtcaagaaaagtgagaaa |
39934874 |
T |
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| Q |
103 |
aatgggtgctgatattaagacaataacagaaacagaactcgctgggattttaaaatggggtcctaatgaacgatccatgactaaagcttgaagtacaacc |
202 |
Q |
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| T |
39934875 |
aatgggtgctgatattaagacaataacagaaacaaaactagctgggattttaaaatggggtcctaaagaccgatccatgactaaagcttgaagtacaacc |
39934974 |
T |
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| Q |
203 |
aagctactttggattgctattggagttgctaagaatatacttga |
246 |
Q |
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| T |
39934975 |
aagctactttggattgctattggagttgataggaatatacttga |
39935018 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 3 - 246
Target Start/End: Complemental strand, 39704252 - 39704009
Alignment:
| Q |
3 |
tcaacacatgtcctactcctattcgttggagcggcataggcattttcctggtaaccttatgccaacctggtaatagcactctgtcaagaaatgtgaggaa |
102 |
Q |
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|||||||||||||||||||||||||||| || ||||||||| |||| | |||| ||||||||||| ||| |||||||||||||||||||| |||||||| |
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| T |
39704252 |
tcaacacatgtcctactcctattcgttgaagtggcataggcgtttttccagtaatcttatgccaacatggcaatagcactctgtcaagaaaggtgaggaa |
39704153 |
T |
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| Q |
103 |
aatgggtgctgatattaagacaataacagaaacagaactcgctgggattttaaaatggggtcctaatgaacgatccatgactaaagcttgaagtacaacc |
202 |
Q |
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| T |
39704152 |
aatggatgttgatattatgactataacagaaacagaaccagctggaattttgaaatggggtcctaatgagcgatccatggctaaagcttgaagtaccgtc |
39704053 |
T |
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| Q |
203 |
aagctactttggattgctattggagttgctaagaatatacttga |
246 |
Q |
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| T |
39704052 |
acactactttggattgctattggagttgctaagaatatacttga |
39704009 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 5 - 197
Target Start/End: Original strand, 39929125 - 39929317
Alignment:
| Q |
5 |
aacacatgtcctactcctattcgttggagcggcataggcattttcctggtaaccttatgccaacctggtaatagcactctgtcaagaaatgtgaggaaaa |
104 |
Q |
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||||||||||||||||||||| | |||||| || |||| ||| ||||||||||||||||||| ||| |||||||| ||||||||||| |||||||||| |
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| T |
39929125 |
aacacatgtcctactcctatttgatggagcagcttaggagattttctggtaaccttatgccaacttggcaatagcaccctgtcaagaaaagtgaggaaaa |
39929224 |
T |
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| Q |
105 |
tgggtgctgatattaagacaataacagaaacagaactcgctgggattttaaaatggggtcctaatgaacgatccatgactaaagcttgaagta |
197 |
Q |
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||||||||||||||||||| |||||||||| ||||| |||||||||| ||||||| |||||| |||||||||||||||||||||||||||| |
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| T |
39929225 |
tgggtgctgatattaagactataacagaaatagaaccagctgggatttcaaaatggtatcctaaagaacgatccatgactaaagcttgaagta |
39929317 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 84; Significance: 5e-40; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 3 - 200
Target Start/End: Original strand, 38061800 - 38062001
Alignment:
| Q |
3 |
tcaacacatgtcctactcctattcgttggagcggcataggcattttcct-ggtaaccttatgccaacctggtaatagcactctgtcaagaaatgtgagga |
101 |
Q |
| |
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||||||||| |||||||||||||||||||||||||||||| |||| | ||| | | ||| ||||||||| |||| ||||||||||||||| ||||||| |
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| T |
38061800 |
tcaacacatagcctactcctattcgttggagcggcataggcttttttttcggttatcgtattccaacctggcaataacactctgtcaagaaaggtgagga |
38061899 |
T |
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| Q |
102 |
aaatgggtgctgatattaagac---aataacagaaacagaactcgctgggattttaaaatggggtcctaatgaacgatccatgactaaagcttgaagtac |
198 |
Q |
| |
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|||| | || ||||||||| || ||||||||||||||||| ||||||||||||||||| | ||||| ||||||||||||| |||| |||||||||| |
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| T |
38061900 |
aaatagatgttgatattaacactataataacagaaacagaaccagctgggattttaaaatgagatcctacagaacgatccatgattaaatcttgaagtac |
38061999 |
T |
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| Q |
199 |
aa |
200 |
Q |
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|| |
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| T |
38062000 |
aa |
38062001 |
T |
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