View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7708A_low_161 (Length: 250)

Name: NF7708A_low_161
Description: NF7708A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7708A_low_161
NF7708A_low_161
[»] chr5 (4 HSPs)
chr5 (6-242)||(16087858-16088094)
chr5 (6-116)||(16085061-16085171)
chr5 (7-83)||(14837106-14837181)
chr5 (36-100)||(3627780-3627845)
[»] chr8 (4 HSPs)
chr8 (18-155)||(5659749-5659887)
chr8 (34-155)||(38643570-38643691)
chr8 (10-116)||(8263541-8263647)
chr8 (20-101)||(21419002-21419084)
[»] chr1 (1 HSPs)
chr1 (12-117)||(19033617-19033722)
[»] chr4 (3 HSPs)
chr4 (20-155)||(14059118-14059255)
chr4 (181-225)||(26947369-26947413)
chr4 (10-118)||(23544741-23544850)
[»] chr2 (3 HSPs)
chr2 (10-132)||(7504925-7505048)
chr2 (10-124)||(26973292-26973407)
chr2 (10-116)||(26968772-26968879)
[»] chr3 (4 HSPs)
chr3 (11-132)||(53731143-53731265)
chr3 (181-238)||(14658272-14658329)
chr3 (181-225)||(14655015-14655059)
chr3 (11-116)||(53726677-53726783)
[»] scaffold0427 (1 HSPs)
scaffold0427 (36-155)||(5856-5968)


Alignment Details
Target: chr5 (Bit Score: 225; Significance: 1e-124; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 6 - 242
Target Start/End: Complemental strand, 16088094 - 16087858
Alignment:
Q  6 gtttggtgttactcgaagttgcggtggctgcgttgttatttgaagatgcggttgccggttattatttgaagttgcggtgttgcggttaccgtttacgcat 105  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  16088094 gtttgttgttactcgaagttgcggtggctgcgttgttatttgaagatgcggttgccggttattatttgaagttgcggtgttgcggttactgtttacgcat 16087995  T
Q  106 caggtacaacaatcttggaatttatccgtgtaactgtaaccgcaagttaaagaccttcttctacaaggtgtcccatgaaatattggtggaggatgttgat 205  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16087994 caggtacaacaatcttggaatttatccctgtaactgtaaccgcaagttaaagaccttcttctacaaggtgtcccatgaaatattggtggaggatgttgat 16087895  T
Q  206 agaactatgtcagcagccaacttatacaacaatatta 242  Q
    |||||||||||||||||||||||||||||||||||||    
T  16087894 agaactatgtcagcagccaacttatacaacaatatta 16087858  T

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Target: chr5; HSP #2
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 6 - 116
Target Start/End: Complemental strand, 16085171 - 16085061
Alignment:
Q  6 gtttggtgttactcgaagttgcggtggctgcgttgttatttgaagatgcggttgccggttattatttgaagttgcggtgttgcggttaccgtttacgcat 105  Q
    ||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||| ||||||||||    
T  16085171 gtttgttgttactcgaaattgcggtggctgcgttgttatttgaagatgcggttgccgattattatttgaagttgtggtgttgcggttactgtttacgcat 16085072  T
Q  106 caggtacaaca 116  Q
    |||||||||||    
T  16085071 caggtacaaca 16085061  T

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Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 7 - 83
Target Start/End: Complemental strand, 14837181 - 14837106
Alignment:
Q  7 tttggtgttactcgaagttgcggtggctgcgttgttatttgaagatgcggttgccggttattatttgaagttgcggt 83  Q
    |||| ||||| |||||||||  ||| ||| |||||||||||||| ||||||||||||||||||||| ||||||||||    
T  14837181 tttgttgttattcgaagttgtagtgactgagttgttatttgaagttgcggttgccggttattattt-aagttgcggt 14837106  T

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Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 36 - 100
Target Start/End: Complemental strand, 3627845 - 3627780
Alignment:
Q  36 cgttgttatttgaagatgcggttgccg-gttattatttgaagttgcggtgttgcggttaccgttta 100  Q
    ||||||||||||||| |||||||||   |||||||||| ||||||||||||||||||||| |||||    
T  3627845 cgttgttatttgaagttgcggttgctacgttattatttaaagttgcggtgttgcggttactgttta 3627780  T

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Target: chr8 (Bit Score: 95; Significance: 1e-46; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 18 - 155
Target Start/End: Original strand, 5659749 - 5659887
Alignment:
Q  18 tcgaagttgcggtggctgcgttgttatttgaagatgcggttgccggttattatttgaagttgcggtgttgcggttaccgtttacgcatcaggtacaacaa 117  Q
    ||||||||| ||||||| ||||||||||||||| |||||||||| |||||||||||||||||||||||||||||| | ||||||||||||||||||||||    
T  5659749 tcgaagttggggtggctacgttgttatttgaagttgcggttgcctgttattatttgaagttgcggtgttgcggttgctgtttacgcatcaggtacaacaa 5659848  T
Q  118 tcttggaatttatcc-gtgtaactgtaaccgcaagttaa 155  Q
    |||||||||||||||  | ||||||| ||||||||||||    
T  5659849 tcttggaatttatcctttataactgtgaccgcaagttaa 5659887  T

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Target: chr8; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 34 - 155
Target Start/End: Complemental strand, 38643691 - 38643570
Alignment:
Q  34 tgcgttgttatttgaagatgcggttgccg-gttattatttgaagttgcggtgttgcggttaccgtttacgcatcaggtacaacaatcttggaatttatcc 132  Q
    |||| ||||||| |||| ||||||||| | ||||||| || ||||||||||||||||||| | ||||||||||   ||||||||||||||||||||||||    
T  38643691 tgcggtgttattcgaagttgcggttgctgcgttattacttaaagttgcggtgttgcggttgcggtttacgcat---gtacaacaatcttggaatttatcc 38643595  T
Q  133 gtgt--aactgtaaccgcaagttaa 155  Q
     | |  |||||| ||||||||||||    
T  38643594 ttttaaaactgtgaccgcaagttaa 38643570  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 10 - 116
Target Start/End: Original strand, 8263541 - 8263647
Alignment:
Q  10 ggtgttactcgaagttgcggtggctgcgttgttatttgaagatgcggttgccg-gttattatttgaagttgcggtgttgcggttaccgtttacgcatcag 108  Q
    ||||||| | |||||||||||| | ||| | ||||| |||| ||||||||| | ||||||| || |||||||| ||||||||||   |||||| ||||||    
T  8263541 ggtgttatttgaagttgcggtgaccgcggt-ttattcgaagttgcggttgctgcgttattacttaaagttgcgatgttgcggttgttgtttacacatcag 8263639  T
Q  109 gtacaaca 116  Q
    ||||||||    
T  8263640 gtacaaca 8263647  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 101
Target Start/End: Complemental strand, 21419084 - 21419002
Alignment:
Q  20 gaagttgcggtggctgcgttgttatttgaagatgcggttgccg-gttattatttgaagttgcggtgttgcggttaccgtttac 101  Q
    |||||||||| ||||||||||||||| |||| || | |||  | |||||||||| |||||| |||||||||||| | ||||||    
T  21419084 gaagttgcggcggctgcgttgttattggaagttgtgattgttgcgttattatttaaagttgtggtgttgcggttgctgtttac 21419002  T

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Target: chr1 (Bit Score: 82; Significance: 8e-39; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 12 - 117
Target Start/End: Complemental strand, 19033722 - 19033617
Alignment:
Q  12 tgttactcgaagttgcggtggctgcgttgttatttgaagatgcggttgccggttattatttgaagttgcggtgttgcggttaccgtttacgcatcaggta 111  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||| ||||||  ||||||||||||| ||||||||||||||||    
T  19033722 tgttactcgaagttgcggtggctgcgttgttatttgaagttgcggttgccggatattatttaaagttgtcgtgttgcggttactgtttacgcatcaggta 19033623  T
Q  112 caacaa 117  Q
    ||||||    
T  19033622 caacaa 19033617  T

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Target: chr4 (Bit Score: 62; Significance: 7e-27; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 20 - 155
Target Start/End: Original strand, 14059118 - 14059255
Alignment:
Q  20 gaagttgcggtggctgcgttgttatttgaagatgcggttgccg-gttattatttgaagttgcggtgttgcggttaccgtttacgcatcaggtacaacaat 118  Q
    ||||||||| || ||||| ||||||| |||| ||||||||| | ||||||| || |||||||||||||| |||| | |||||| ||||||||||||||||    
T  14059118 gaagttgcgatgactgcgatgttattcgaagttgcggttgctgcgttattacttaaagttgcggtgttgtggttgctgtttacacatcaggtacaacaat 14059217  T
Q  119 cttggaatttatcc-gtgtaactgtaaccgcaagttaa 155  Q
    ||||||||||||||  | ||||||| ||||||||||||    
T  14059218 cttggaatttatcctttataactgtgaccgcaagttaa 14059255  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 181 - 225
Target Start/End: Complemental strand, 26947413 - 26947369
Alignment:
Q  181 tgaaatattggtggaggatgttgatagaactatgtcagcagccaa 225  Q
    |||| ||||||||||||||||||||||||||||||||||| ||||    
T  26947413 tgaagtattggtggaggatgttgatagaactatgtcagcaaccaa 26947369  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 10 - 118
Target Start/End: Original strand, 23544741 - 23544850
Alignment:
Q  10 ggtgttactcgaagttgcggtggctgcgttgttatttgaagatgcggttgccg-gttattatttgaagttgcggtgttgcggttaccgtttacgcatcag 108  Q
    ||||||| | ||||||| |||||||| | |||| || |||| ||||||||| | |||||||  | |||||||||||||||||||   |||||| ||| ||    
T  23544741 ggtgttatttgaagttgtggtggctggggtgttgttcgaagttgcggttgctgcgttattacctaaagttgcggtgttgcggttgatgtttacacataag 23544840  T
Q  109 gtacaacaat 118  Q
    ||||||||||    
T  23544841 gtacaacaat 23544850  T

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Target: chr2 (Bit Score: 60; Significance: 1e-25; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 10 - 132
Target Start/End: Complemental strand, 7505048 - 7504925
Alignment:
Q  10 ggtgttactcgaagttgcggtggctgcgttgttatttgaagatgcggttgccg-gttattatttgaagttgcggtgttgcggttaccgtttacgcatcag 108  Q
    ||||||| | |||||||||||||||||| ||||||| |||| ||||||||| | ||||||| || |||||||||||||  |||| | |||||| ||||||    
T  7505048 ggtgttatttgaagttgcggtggctgcggtgttattcgaagttgcggttgctgcgttattacttaaagttgcggtgttatggttgctgtttacacatcag 7504949  T
Q  109 gtacaacaatcttggaatttatcc 132  Q
    ||||||||||||| ||||||||||    
T  7504948 gtacaacaatcttagaatttatcc 7504925  T

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Target: chr2; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 10 - 124
Target Start/End: Complemental strand, 26973407 - 26973292
Alignment:
Q  10 ggtgttactcgaagttgcggtggctgcgttgttatttgaagatgcggttgccg-gttattatttgaagttgcggtgttgcggttaccgtttacgcatcag 108  Q
    ||||||| | |||||||||||||||||| ||||||| |||| ||||||||| | ||||||| || ||||||||||||||||||| | |||||| ||||||    
T  26973407 ggtgttatttgaagttgcggtggctgcggtgttattcgaagttgcggttgctgcgttattacttaaagttgcggtgttgcggttgctgtttacacatcag 26973308  T
Q  109 gtacaacaatcttgga 124  Q
    |||||| |||||||||    
T  26973307 gtacaagaatcttgga 26973292  T

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Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 10 - 116
Target Start/End: Complemental strand, 26968879 - 26968772
Alignment:
Q  10 ggtgttactcgaagttgcggtggctgcgttgttatttgaagatgcggttgccgg-ttattatttgaagttgcggtgttgcggttaccgtttacgcatcag 108  Q
    ||||||| | |||||| ||||||||||  |||||||  ||| ||||||||| |  || ||| || ||||||||||||||||||| | |||||| ||||||    
T  26968879 ggtgttatttgaagttccggtggctgctgtgttattcaaagttgcggttgctgcattgttacttaaagttgcggtgttgcggttgctgtttactcatcag 26968780  T
Q  109 gtacaaca 116  Q
    ||||||||    
T  26968779 gtacaaca 26968772  T

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Target: chr3 (Bit Score: 59; Significance: 4e-25; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 11 - 132
Target Start/End: Complemental strand, 53731265 - 53731143
Alignment:
Q  11 gtgttactcgaagttgcggtggctgcgttgttatttgaagatgcggttgccg-gttattatttgaagttgcggtgttgcggttaccgtttacgcatcagg 109  Q
    |||||| | |||||||||||||||||| |||| ||  ||| ||||||||| | ||||||| || ||||||||||||||||||| | |||||| ||| |||    
T  53731265 gtgttatttgaagttgcggtggctgcggtgttcttcaaagttgcggttgctgtgttattacttaaagttgcggtgttgcggttgctgtttacacataagg 53731166  T
Q  110 tacaacaatcttggaatttatcc 132  Q
    |||||||||||||||||||||||    
T  53731165 tacaacaatcttggaatttatcc 53731143  T

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Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 181 - 238
Target Start/End: Original strand, 14658272 - 14658329
Alignment:
Q  181 tgaaatattggtggaggatgttgatagaactatgtcagcagccaacttatacaacaat 238  Q
    |||| |||||||||||||||||||||||||||||||||||||||| ||| ||| ||||    
T  14658272 tgaagtattggtggaggatgttgatagaactatgtcagcagccaaattacacagcaat 14658329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 181 - 225
Target Start/End: Original strand, 14655015 - 14655059
Alignment:
Q  181 tgaaatattggtggaggatgttgatagaactatgtcagcagccaa 225  Q
    |||| ||||||||||||||||||||||||||||||||||||||||    
T  14655015 tgaagtattggtggaggatgttgatagaactatgtcagcagccaa 14655059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 11 - 116
Target Start/End: Complemental strand, 53726783 - 53726677
Alignment:
Q  11 gtgttactcgaagttgcggtggctgcgttgttatttgaagatgcggttgccg-gttattatttgaagttgcggtgttgcggttaccgtttacgcatcagg 109  Q
    |||||| | ||||||||||||| |||| |||| ||  ||| ||||||||| | ||||||| || ||||||||||||||||||| | |||||| ||| |||    
T  53726783 gtgttatttgaagttgcggtggttgcggtgttcttcaaagttgcggttgctgtgttattacttaaagttgcggtgttgcggttgctgtttacacataagg 53726684  T
Q  110 tacaaca 116  Q
    |||||||    
T  53726683 tacaaca 53726677  T

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Target: scaffold0427 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: scaffold0427
Description:

Target: scaffold0427; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 36 - 155
Target Start/End: Original strand, 5856 - 5968
Alignment:
Q  36 cgttgttatttgaagatgcggttgccggttattatttgaagttgcggtgttgcggttaccgtttacgcatcaggtacaacaatcttggaatttatcc-gt 134  Q
    ||||||||||||||| ||||||||||||||||||||||||        ||||||||| | |||||| ||| ||||||||||||||||||||||||||  |    
T  5856 cgttgttatttgaagttgcggttgccggttattatttgaa--------gttgcggttgctgtttacacattaggtacaacaatcttggaatttatccttt 5947  T
Q  135 gtaactgtaaccgcaagttaa 155  Q
     ||||||| ||||||||||||    
T  5948 ataactgtgaccgcaagttaa 5968  T

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