View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7708A_low_166 (Length: 249)
Name: NF7708A_low_166
Description: NF7708A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7708A_low_166 |
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Alignment Details
Target: chr6 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 233
Target Start/End: Original strand, 24125288 - 24125520
Alignment:
| Q |
1 |
ataagaaaagtgaacactctcaggtggggttgacaaaaactaggtccttgtttccagagatagtctgacctagactcaccccccatcgccctactctatt |
100 |
Q |
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| T |
24125288 |
ataagaaaagtgaacactcccgggtggggttgacaaaaactaggtccttgtttccagggatagtctgacctagactcaccccccatcgccctactctatt |
24125387 |
T |
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| Q |
101 |
agctccaatataaaatcaaggccaatttccactcgtaataggtacatgatgtatgannnnnnncttcaacggaaccattttcagaaagaaaaacaagtgg |
200 |
Q |
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| T |
24125388 |
agctccaatataaaatcaaggccaatttccactcataataggtacatgatgtatgatttttttcttcaacggaaccattttcagaaagaaaaacaagtgg |
24125487 |
T |
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| Q |
201 |
aaagttgattccacatgtgtcccatagagagca |
233 |
Q |
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| T |
24125488 |
aaagttgattccacatgtgtcctatagagagca |
24125520 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 171 - 224
Target Start/End: Complemental strand, 45163287 - 45163235
Alignment:
| Q |
171 |
ggaaccattttcagaaagaaaaacaagtggaaagttgattccacatgtgtccca |
224 |
Q |
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| T |
45163287 |
ggaaccattttcagaaagaagaacaagtggaaagttgatt-cacatgtgtccca |
45163235 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 45163395 - 45163326
Alignment:
| Q |
1 |
ataagaaaagtgaacactctcaggtggggttgacaaaaactaggtccttgtttccagagatagtctgacc |
70 |
Q |
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| T |
45163395 |
ataagtaaagtgaacactcctaggtggggttggcaagaaccaggtccttgctttcagggatagtttgacc |
45163326 |
T |
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