View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7708A_low_169 (Length: 249)
Name: NF7708A_low_169
Description: NF7708A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7708A_low_169 |
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Alignment Details
Target: chr4 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 10 - 242
Target Start/End: Complemental strand, 36075318 - 36075086
Alignment:
| Q |
10 |
agatgtttcatcttttgagacacgcagaattaaatttctctcgacttattcaattattttgttcttattgaagcatcatcatcaatccactaaccaacaa |
109 |
Q |
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||||||||||||||||||||||| |||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36075318 |
agatgtttcatcttttgagacactcagatttaaatttctctctacttattcaattattttgttcttattgaagcatcatcatcaatccactaaccaacaa |
36075219 |
T |
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| Q |
110 |
catgaatccagaaggatgaatgtaacaaattcagataattattttgtcactttatctctctacaaccaaagtaaccagtacctctttctctctctaaaat |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36075218 |
catgaatccagaaggatgaatgtaacaaattcagataattattttgtcactttatctctctacaaccaaagtaaccagtacctctttctctctctaaaat |
36075119 |
T |
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| Q |
210 |
caacactgcattttcctcccccttttcatctct |
242 |
Q |
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||||||||||||||||||||||||||| ||||| |
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| T |
36075118 |
caacactgcattttcctcccccttttcttctct |
36075086 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 10 - 242
Target Start/End: Complemental strand, 42169295 - 42169063
Alignment:
| Q |
10 |
agatgtttcatcttttgagacacgcagaattaaatttctctcgacttattcaattattttgttcttattgaagcatcatcatcaatccactaaccaacaa |
109 |
Q |
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||||||||||||||||||||||| |||| ||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42169295 |
agatgtttcatcttttgagacactcagatttaaatttctctctacttcttcaattattttgttcttattgaagcatcatcatcaatccactaaccaacaa |
42169196 |
T |
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| Q |
110 |
catgaatccagaaggatgaatgtaacaaattcagataattattttgtcactttatctctctacaaccaaagtaaccagtacctctttctctctctaaaat |
209 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||| |
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| T |
42169195 |
catgaatccagaaagatgaatgtaacaaattcagataattattttgtcactttatctctatacaaccaaagtaaccagtaccgctttctctctctaaaat |
42169096 |
T |
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| Q |
210 |
caacactgcattttcctcccccttttcatctct |
242 |
Q |
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|||||||||||||||||||| |||||| ||||| |
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| T |
42169095 |
caacactgcattttcctccctcttttcttctct |
42169063 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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