View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7708A_low_17 (Length: 442)
Name: NF7708A_low_17
Description: NF7708A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7708A_low_17 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 190; Significance: 1e-103; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 231 - 440
Target Start/End: Original strand, 31069462 - 31069671
Alignment:
| Q |
231 |
gtcttcttacttcagcaaggtgatgttaagcttcaaaaccattccccctattcttcacttgtgtctcttctgctctttgaattctctatttttcttagtt |
330 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
31069462 |
gtcttcttccttcagcaaggtgatgttaagcttcaaaaccattccccctattcttcacttgtgtctcttcttctctttgaattctctatttttcttagtt |
31069561 |
T |
|
| Q |
331 |
ctcgtgatttgatttttgcctttattgtttttctatgaagttgttcttctgctacttgaaagattttgtgggaagagaaatgacggtagaactcaagaat |
430 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
31069562 |
ctcgtgatttgatttttacctttattgtttttctatgaagttgttcttctgctacttgaaagattttgcgggaagagaaatgacggtagaactcaagaat |
31069661 |
T |
|
| Q |
431 |
aatttagcca |
440 |
Q |
| |
|
||||||||| |
|
|
| T |
31069662 |
gatttagcca |
31069671 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 157; E-Value: 3e-83
Query Start/End: Original strand, 6 - 166
Target Start/End: Original strand, 31069237 - 31069397
Alignment:
| Q |
6 |
acaatcacccatcaagatgatttcaccaatatcgattcaagtttcatagaaaacaccgaagacaaaatgaaagaaattgcttcagttcttccaaaaatgg |
105 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31069237 |
acaaacacccatcaagatgatttcaccaatatcgattcaagtttcatagaaaacaccgaagacaaaatgaaagaaattgcttcagttcttccaaaaatgg |
31069336 |
T |
|
| Q |
106 |
tcaaggaatatcacaagattcatctcaacacatttcgttaatataaataagaagataatag |
166 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31069337 |
tcaaggaatatcacaagattcatctcaacacatttcgttaatataaataagaagataatag |
31069397 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 358 - 440
Target Start/End: Original strand, 37614327 - 37614409
Alignment:
| Q |
358 |
tttttctatgaagttgttcttctgctacttgaaagattttgtgggaagagaaatgacggtagaactcaagaataatttagcca |
440 |
Q |
| |
|
||||||||||||| ||||||||| ||||| |||||||| |||||||||||| ||||||| ||||||||||| ||||||||| |
|
|
| T |
37614327 |
tttttctatgaagctgttcttctcgtacttcaaagatttggtgggaagagaagtgacggttgaactcaagaacgatttagcca |
37614409 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 355 - 440
Target Start/End: Original strand, 42440432 - 42440517
Alignment:
| Q |
355 |
ttgtttttctatgaagttgttcttctgctacttgaaagattttgtgggaagagaaatgacggtagaactcaagaataatttagcca |
440 |
Q |
| |
|
|||||||| |||| |||||||||||| ||||| |||||||| |||||||||||| | ||||||||||||||||| ||||||||| |
|
|
| T |
42440432 |
ttgtttttgtatgtagttgttcttctcatacttcaaagatttggtgggaagagaagttacggtagaactcaagaacgatttagcca |
42440517 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 48; Significance: 3e-18; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 12 - 130
Target Start/End: Complemental strand, 11593109 - 11592990
Alignment:
| Q |
12 |
acccatcaagatgatttcaccaatatcgattcaagtttcatagaaaacaccgaagacaaaatgaaagaaattgcttcagttcttccaaaaat-ggtcaag |
110 |
Q |
| |
|
||||||||| | |||| |||||| || ||||| ||||||||||||||||| |||||| ||| |||||| |||||| ||||||||||| || ||||||| |
|
|
| T |
11593109 |
acccatcaacaagattacaccaacatggattctggtttcatagaaaacaccaaagacagaatcaaagaagctgcttctgttcttccaaacatgggtcaag |
11593010 |
T |
|
| Q |
111 |
gaatatcacaagattcatct |
130 |
Q |
| |
|
|||| ||||||||| ||||| |
|
|
| T |
11593009 |
gaatttcacaagatgcatct |
11592990 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 12 - 130
Target Start/End: Original strand, 11645010 - 11645129
Alignment:
| Q |
12 |
acccatcaagatgatttcaccaatatcgattcaagtttcatagaaaacaccgaagacaaaatgaaagaaattgcttcagttcttccaaaaat-ggtcaag |
110 |
Q |
| |
|
||||||||| | |||| |||||| || ||||| ||||||||||||||||| |||||| ||| |||||| |||||| ||||||||||| || ||||||| |
|
|
| T |
11645010 |
acccatcaacaagattacaccaacatggattctggtttcatagaaaacaccaaagacagaatcaaagaagctgcttctgttcttccaaacatgggtcaag |
11645109 |
T |
|
| Q |
111 |
gaatatcacaagattcatct |
130 |
Q |
| |
|
|||| ||||||||| ||||| |
|
|
| T |
11645110 |
gaatttcacaagatgcatct |
11645129 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University